BAC Information

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BAC

Clone NameB6Ng01-311H06
Chromosome3 (Build37)
Map Location 124,965,159 - 125,049,871
singlet/doubletdoublet
Overlap genenone
Upstream geneEG668809, Tram1l1, LOC100043740, 1700006A11Rik, 1700003H04Rik, LOC668817, LOC668820
Downstream geneNdst4, Ugt8a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311H06.bB6Ng01-311H06.g
ACCGA103166GA103167
length1,076750
definitionB6Ng01-311H06.b B6Ng01-311H06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,965,159 - 124,966,241)(125,049,122 - 125,049,871)
sequence
gaattcccagctctttccaagtgttgtggtgtacatccataatcagcacc
cgaaagcctgagtgatgaagccgaaaaacttcaaggcagaggccagtgtg
gactacagagcaaggtactgagtaaaaacgaaggggagaaggaaggaaaa
aaattcaaaacctgtctcttaataatagtgagtatagttacagtggagag
agatggctatgaagctttaagcaatctccatatttaaaataaaatatcca
acatagtttcttcttaattcatggaacatccaggtaagtggcatttaggc
aaatctgattttaaaagacttcactttagttggtatagtcatgtatcatt
ttacataggtttcaataccgtattttattcaagtcattaccttaaaaaca
ttcatcattgcatctaatctacactgcttgtaaatacttggacattccag
agttaaaaactaaatcaccctttgaatactgtaagtagataaaagtgtat
aaaatatttattttaaatatgcataataatattaaataagcatattaata
tgatagtggaaatatagagctgagttaacttaatgattataaatcttcat
ttattctttaatgtacaaaaatacaaaatttcatttggcccattataaac
caagaatgacatcattcttccatcacagaacagtctagtataaagtacag
tatagaaagaattgcaatttactcagtttccataacataacatgacgaat
aacctgattgagaaaaatattcaagatattaattcataactaaatcatta
cctatttaactttaagcaatggtttgcctaaccatatacattatagcccc
caaaagaaaatatgccaggaacatatgaaaatccaaaacaaagaaaggat
ttgaattacatttccaccaacgttgacctgaaaacaaatcagtaacctct
gcaaccatcaatatttatctctaattggacaaaaagagagataatagctt
catatagagtcttcagatgtttctgtctttcttttttgatctctgtgttt
tcccctctgtaaaaaatgcagagagc

gaattccttctcagaaaccaagagggaggttcatctcagaggaaatcctt
atacaacaaagaaaaactatcttttgcctaatctcagaacaagaatgtaa
atatgacattttaattttgattagacaaaaatcttctctaagcccaattt
ggtctcttttattttatagcactcacacctatagatgcatggatacatat
tcatgtatccttgatgtgagttatttctgcttcctttgtagttacttcct
aagattgatgggggaaatgcctggataaattggtcctctgtgtatcaggt
tgttaaatatttttgataaaatctgaaagaaggtgaatggggattaaaat
tgttcaactcatttgatttgatttcagaatctgttatcctaagtattttt
tcagtaaaatgaacatagttacggtgagaggaaattttcattgcaatcga
aaaggtagcaatgagaatttgctcctacttgccagttgctccagtcactt
atgtgtgagccagaaacagagacaagaacacactgctctcaaataatttt
tgtattctgaatgttttttttttttttacttgagaatgtattttcttgaa
agactgcacattctggaggtaagtttgtttctgtctccctaacaacttag
gaccatcatggtattatgtaatgtttaaccacacagagctccaatttata
tatatatatatatatatatatatatatatatatatatatatatatatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_124965159_124966241
seq2: B6Ng01-311H06.b_45_1120

seq1  GAATTCCCAGCTCTTTCCAAGTGTTGTGGTGTACATCCATAATCAGCACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAGCTCTTTCCAAGTGTTGTGGTGTACATCCATAATCAGCACC  50

seq1  CGAAAGCCTGAGTGATGAAGCCGAAAAACTTCAAGGCAGAGGCCAGTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAAGCCTGAGTGATGAAGCCGAAAAACTTCAAGGCAGAGGCCAGTGTG  100

seq1  GACTACAGAGCAAGGTACTGAGTAAAAACGAAGGGGAGAAGGAAGGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACAGAGCAAGGTACTGAGTAAAAACGAAGGGGAGAAGGAAGGAAAA  150

seq1  AAATTCAAAACCTGTCTCTTAATAATAGTGAGTATAGTTACAGTGGAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCAAAACCTGTCTCTTAATAATAGTGAGTATAGTTACAGTGGAGAG  200

seq1  AGATGGCTATGAAGCTTTAAGCAATCTCCATATTTAAAATAAAATATCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCTATGAAGCTTTAAGCAATCTCCATATTTAAAATAAAATATCCA  250

seq1  ACATAGTTTCTTCTTAATTCATGGAACATCCAGGTAAGTGGCATTTAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTTTCTTCTTAATTCATGGAACATCCAGGTAAGTGGCATTTAGGC  300

seq1  AAATCTGATTTTAAAAGACTTCACTTTAGTTGGTATAGTCATGTATCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGATTTTAAAAGACTTCACTTTAGTTGGTATAGTCATGTATCATT  350

seq1  TTACATAGGTTTCAATACCGTATTTTATTCAAGTCATTACCTTAAAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATAGGTTTCAATACCGTATTTTATTCAAGTCATTACCTTAAAAACA  400

seq1  TTCATCATTGCATCTAATCTACACTGCTTGTAAATACTTGGACATTCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCATTGCATCTAATCTACACTGCTTGTAAATACTTGGACATTCCAG  450

seq1  AGTTAAAAACTAAATCACCCTTTGAATACTGTAAGTAGATAAAAGTGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAAAACTAAATCACCCTTTGAATACTGTAAGTAGATAAAAGTGTAT  500

seq1  AAAATATTTATTTTAAATATGCATAATAATATTAAATAAGCATATTAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTTATTTTAAATATGCATAATAATATTAAATAAGCATATTAATA  550

seq1  TGATAGTGGAAATATAGAGCTGAGTTAACTTAATGATTATAAATCTTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGTGGAAATATAGAGCTGAGTTAACTTAATGATTATAAATCTTCAT  600

seq1  TTATTCTTTAATGTACAAAAATACAAAATTTCATTTGGCCCATTATAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTTTAATGTACAAAAATACAAAATTTCATTTGGCCCATTATAAAC  650

seq1  CAAGAATGACATCATTCTTCCATCACAGAACAGTCTAGTATAAAGTACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATGACATCATTCTTCCATCACAGAACAGTCTAGTATAAAGTACAG  700

seq1  TATAGAAAGAATTGCAATTTACTCAGTTTCCATAACATAACATGACGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAAAGAATTGCAATTTACTCAGTTTCCATAACATAACATGACGAAT  750

seq1  AACCTGATTGAGAAAAATATTCAAGATATTAATTCATAACTAAATCATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGATTGAGAAAAATATTCAAGATATTAATTCATAACTAAATCATTA  800

seq1  CCTATTTAACTTTAAGCAATGGTTTGCCTAACCATATACATTATAGCCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTTAACTTTAAGCAATGGTTTGCCTAACCATATACATTATAGCCCC  850

seq1  CAAAAGAAAATATGCCAGGAACATATGAAAATCCAAAACAAAG-AAGGAT  899
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CAAAAGAAAATATGCCAGGAACATATGAAAATCCAAAACAAAGAAAGGAT  900

seq1  TTGAATTACATTTCCACCAACGTTGACCTGAAAACAAATCAGGTAACCTC  949
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTGAATTACATTTCCACCAACGTTGACCTGAAAACAAATCA-GTAACCTC  949

seq1  TGCAACCATCAATATTTATCTCTAATTGGACAAAAAGAGAGAATAAATAG  999
      ||||||||||||||||||||||||||||||||||||||||||   |||||
seq2  TGCAACCATCAATATTTATCTCTAATTGGACAAAAAGAGAGA--TAATAG  997

seq1  CTTCATATAGAGTCTTCAGAATGTTTTCTGTCTTTCTTTTTTTGAATCTC  1049
      ||||||||||||||||||| ||| ||||||||||||||||||   |||||
seq2  CTTCATATAGAGTCTTCAG-ATG-TTTCTGTCTTTCTTTTTT--GATCTC  1043

seq1  TGTGTTTTCCCCTCTGTAAAAAATGCAAGAGAGC  1083
      |||||||||||||||||||||||||| |||||||
seq2  TGTGTTTTCCCCTCTGTAAAAAATGC-AGAGAGC  1076


seq1: chr3_125049122_125049871
seq2: B6Ng01-311H06.g_67_816 (reverse)

seq1  TATATATATATATATATATATATATATATATATATATATATATATATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATATATATATATATATATATATATATATA  50

seq1  TATAAATTGGAGCTCTGTGTGGTTAAACATTACATAATACCATGATGGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATTGGAGCTCTGTGTGGTTAAACATTACATAATACCATGATGGTC  100

seq1  CTAAGTTGTTAGGGAGACAGAAACAAACTTACCTCCAGAATGTGCAGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTTGTTAGGGAGACAGAAACAAACTTACCTCCAGAATGTGCAGTCT  150

seq1  TTCAAGAAAATACATTCTCAAGTAAAAAAAAAAAAAACATTCAGAATACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGAAAATACATTCTCAAGTAAAAAAAAAAAAAACATTCAGAATACA  200

seq1  AAAATTATTTGAGAGCAGTGTGTTCTTGTCTCTGTTTCTGGCTCACACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTATTTGAGAGCAGTGTGTTCTTGTCTCTGTTTCTGGCTCACACAT  250

seq1  AAGTGACTGGAGCAACTGGCAAGTAGGAGCAAATTCTCATTGCTACCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGACTGGAGCAACTGGCAAGTAGGAGCAAATTCTCATTGCTACCTTT  300

seq1  TCGATTGCAATGAAAATTTCCTCTCACCGTAACTATGTTCATTTTACTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATTGCAATGAAAATTTCCTCTCACCGTAACTATGTTCATTTTACTGA  350

seq1  AAAAATACTTAGGATAACAGATTCTGAAATCAAATCAAATGAGTTGAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATACTTAGGATAACAGATTCTGAAATCAAATCAAATGAGTTGAACA  400

seq1  ATTTTAATCCCCATTCACCTTCTTTCAGATTTTATCAAAAATATTTAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAATCCCCATTCACCTTCTTTCAGATTTTATCAAAAATATTTAACA  450

seq1  ACCTGATACACAGAGGACCAATTTATCCAGGCATTTCCCCCATCAATCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGATACACAGAGGACCAATTTATCCAGGCATTTCCCCCATCAATCTT  500

seq1  AGGAAGTAACTACAAAGGAAGCAGAAATAACTCACATCAAGGATACATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGTAACTACAAAGGAAGCAGAAATAACTCACATCAAGGATACATGA  550

seq1  ATATGTATCCATGCATCTATAGGTGTGAGTGCTATAAAATAAAAGAGACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTATCCATGCATCTATAGGTGTGAGTGCTATAAAATAAAAGAGACC  600

seq1  AAATTGGGCTTAGAGAAGATTTTTGTCTAATCAAAATTAAAATGTCATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGGGCTTAGAGAAGATTTTTGTCTAATCAAAATTAAAATGTCATAT  650

seq1  TTACATTCTTGTTCTGAGATTAGGCAAAAGATAGTTTTTCTTTGTTGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTCTTGTTCTGAGATTAGGCAAAAGATAGTTTTTCTTTGTTGTAT  700

seq1  AAGGATTTCCTCTGAGATGAACCTCCCTCTTGGTTTCTGAGAAGGAATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATTTCCTCTGAGATGAACCTCCCTCTTGGTTTCTGAGAAGGAATTC  750


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