BAC Information

Click to search

BAC

Clone NameB6Ng01-311L07
Chromosome3 (Build37)
Map Location 45,237,623 - 45,238,684
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC676484, LOC100039296, Pcdh10
Downstream geneLOC100039282, LOC433580, LOC671801
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311L07.bB6Ng01-311L07.g
ACCGA103358GA103359
length1,2221,068
definitionB6Ng01-311L07.b B6Ng01-311L07.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagtactgcccctagtattacactatcaccttgagtaaaagttag
gtcactgcccttcacaggaatctaccatcaccaaggaagaaagaagtttc
ttaccgtaggagaaaccaaaatagatacttagaactatagctgagttaca
cgcatatacaggaatttacaatggtttaggaagtagatcgggctgtggtt
ttagactattgcattattcatgaaatggttagatagaaaggaactcccta
gttagaaccatgacttgggtgtgaaagaccttgccctaggagtgaaaaga
tctcacacctggcttctaagactatagctgaccttagatagggctgactt
tgtctcagttattttattgcccagttccttccagtctttgcgttttcatt
cctctgttctgtgtaagagtcatttagcatcctgtaacctcatttgtacc
ttgcaggtatgtcacccaacttccttattgtcttctgtataaaaaaatct
gatgctcgatttgacattacattcagatccaacacaacctctcctgtgtg
catctgtctgtcaatcctacgctttgcccacccacgactagagacccgtt
ccacacagacaaagggacccagagggtctgcagcaacagatatttgcaag
actcctgaaaaagatactgggaattgaacgtgggacccttggaagagctg
caactgctcttaacaacaaagccattactgtagccctcaaatagtatttt
atgggccattatgttgaatcatgtcataaagcacttggcaagtaaacatg
ataatttgagtttaatctcaggatcccacactcagagagaactgactcct
gaaaatattcctatggcctcacgtgtacctatgctgtgctactcttgtgt
ctgtttcatatgtacacatgccacacacttgtcacagatgtgtgcacaca
cacaaaataaaaaataaatgaaaataatttcagaagactattaattttta
ttcaacacacatagaagtagtcaaactcataagaaaaaaaaaattagctg
cagattgataattataagaagaaatggtatcaacctgtagttcaacaaac
cccatgggtcaaagaacatttttccactaggtacccctatgaacattgga
aaaatagctaatttaactatggtttccaccattaaggagaaattggccaa
ttaggagagggttgatctacta
gaattcagttcccaggggacacggaaggtacaactattcctagttcaaag
ttcaaggaatcacagacacagaaatttaaataaatgtagtttttactaag
agtatttaaagtaccttcattctttattgccaacaacgggaagtaagaaa
agctagtgtgtctgtgtgaagtcaaaacttgccatcaacatttaacttat
taagaacagattccatgcaactaaatttatttcaagagtgtttgctgtta
acttttaattttctgtaattatcctgctttcagttaaatggatctcaaaa
ttagtcttttcaaactaggtgtacatttttaaaaaaaatcctctttttaa
tgtaaaaagcatgccttctcacaaaattatattttatataaattaaaagg
aaaaaaagacccaaaatggttaaccaaagaaaaatttaggtttaaggcaa
aattccctaaattctggcgttctgcagaatgaagagatactaattagtta
caattgaaattgtaaactattatgaattgtaaaaaattatgaatactcag
aaaccaatgccaattcatagagaactgtggaggccatggaatgtaatggt
catgtttgcaatccagactagggagcttccccatttttgacatcatttaa
aacctgacacttattaattttcaaaatatggaatgagggaaacgataaca
acttaagctgtgtatgtgaagaaaacataattgccaatttgctttgaatc
tttcattttaaaaacacaacattttttttaaatctttctctttttttctt
ttttaattaatcattccatttatgtcccataagtttggttatgttgtacc
ttcattttcattaaattataaaaagtctttaatttctttctttatgtttt
ccttgaccaagttatcattgagtagagcgttgttcagcatccatgtatat
gtgagctttctggtatctttggttgctattgaagaccagccttaatctga
taggagcattgggttcttgaagattgttcaacaccccagtgtaggggaat
accaggggcaaggaggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_45237623_45238684
seq2: B6Ng01-311L07.g_67_1134

seq1  GAATTCAGTTCCCAGGGGACACGGAAGGTACAACTATTCCTAGTTCAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCCCAGGGGACACGGAAGGTACAACTATTCCTAGTTCAAAG  50

seq1  TTCAAGGAATCACAGACACAGAAATTTAAATAAATGTAGTTTTTACTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGAATCACAGACACAGAAATTTAAATAAATGTAGTTTTTACTAAG  100

seq1  AGTATTTAAAGTACCTTCATTCTTTATTGCCAACAACGGGAAGTAAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTAAAGTACCTTCATTCTTTATTGCCAACAACGGGAAGTAAGAAA  150

seq1  AGCTAGTGTGTCTGTGTGAAGTCAAAACTTGCCATCAACATTTAACTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGTGTGTCTGTGTGAAGTCAAAACTTGCCATCAACATTTAACTTAT  200

seq1  TAAGAACAGATTCCATGCAACTAAATTTATTTCAAGAGTGTTTGCTGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAACAGATTCCATGCAACTAAATTTATTTCAAGAGTGTTTGCTGTTA  250

seq1  ACTTTTAATTTTCTGTAATTATCCTGCTTTCAGTTAAATGGATCTCAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTAATTTTCTGTAATTATCCTGCTTTCAGTTAAATGGATCTCAAAA  300

seq1  TTAGTCTTTTCAAACTAGGTGTACATTTTTAAAAAAAATCCTCTTTTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCTTTTCAAACTAGGTGTACATTTTTAAAAAAAATCCTCTTTTTAA  350

seq1  TGTAAAAAGCATGCCTTCTCACAAAATTATATTTTATATAAATTAAAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAAAGCATGCCTTCTCACAAAATTATATTTTATATAAATTAAAAGG  400

seq1  AAAAAAAGACCCAAAATGGTTAACCAAAGAAAAATTTAGGTTTAAGGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGACCCAAAATGGTTAACCAAAGAAAAATTTAGGTTTAAGGCAA  450

seq1  AATTCCCTAAATTCTGGCGTTCTGCAGAATGAAGAGATACTAATTAGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCCTAAATTCTGGCGTTCTGCAGAATGAAGAGATACTAATTAGTTA  500

seq1  CAATTGAAATTGTAAACTATTATGAATTGTAAAAAATTATGAATACTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGAAATTGTAAACTATTATGAATTGTAAAAAATTATGAATACTCAG  550

seq1  AAACCAATGCCAATTCATAGAGAACTGTGGAGGCCATGGAATGTAATGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAATGCCAATTCATAGAGAACTGTGGAGGCCATGGAATGTAATGGT  600

seq1  CATGTTTGCAATCCAGACTAGGGAGCTTCCCCATTTTTGACATCATTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTGCAATCCAGACTAGGGAGCTTCCCCATTTTTGACATCATTTAA  650

seq1  AACCTGACACTTATTAATTTTCAAAATATGGAATGAGGGAAACGATAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGACACTTATTAATTTTCAAAATATGGAATGAGGGAAACGATAACA  700

seq1  ACTTAAGCTGTGTATGTGAAGAAAACATAATTGCCAATTTGCTTTGAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAGCTGTGTATGTGAAGAAAACATAATTGCCAATTTGCTTTGAATC  750

seq1  TTTCATTTTAAAAACACAACA-TTTTTTTAAATCTTTCTCTTTTTTTCTT  799
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTTCATTTTAAAAACACAACATTTTTTTTAAATCTTTCTCTTTTTTTCTT  800

seq1  TTTTAATTAATCATTCCATTTATGTCCCATAAGTTTGGTTATGTTGTACC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTAATCATTCCATTTATGTCCCATAAGTTTGGTTATGTTGTACC  850

seq1  TTCATTTTCATTAAATTATAAAAAGTCTTTAATTTCTTTCTTTATGTTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTCATTAAATTATAAAAAGTCTTTAATTTCTTTCTTTATGTTTT  900

seq1  CCTTGACCAAGTTATCATTGAGTAGAGCGTTGTTCAGCATCCATGTATAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGACCAAGTTATCATTGAGTAGAGCGTTGTTCAGCATCCATGTATAT  950

seq1  GTGAGCTTTCTGGTATCTTT-GTTGCTATTGAAGACCAGCCTTAATCTGA  998
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GTGAGCTTTCTGGTATCTTTGGTTGCTATTGAAGACCAGCCTTAATCTGA  1000

seq1  TAGGAGGCATTGGGT--CTGAGGA-TGTTCAACACCCCAGTGTAGGGGAA  1045
      ||||| |||||||||   ||| || |||||||||||||||||||||||||
seq2  TAGGA-GCATTGGGTTCTTGAAGATTGTTCAACACCCCAGTGTAGGGGAA  1049

seq1  TACCAGGG--CAGGAGGAT  1062
      ||||||||   ||||||||
seq2  TACCAGGGGCAAGGAGGAT  1068