BAC Information

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BAC

Clone NameB6Ng01-311M04
Chromosome3 (Build37)
Map Location 112,506,330 - 112,632,195
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC625585, EG229746, LOC668717
Downstream geneUtp14B-ps, EG433643, OTTMUSG00000022462, LOC668723, Amy2-2, Amy2-1, LOC100043684, LOC100043686, LOC100043688, LOC100043207, Amy1, Rnpc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311M04.bB6Ng01-311M04.g
ACCGA103399GA103400
length1,1211,100
definitionB6Ng01-311M04.b B6Ng01-311M04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,506,330 - 112,507,456)(112,631,088 - 112,632,195)
sequence
gaattcttcattgttgaccttgctaatcttgctgcacaatgtctttttgc
agtacttttatgtaacttctgttcatgttctgttgttatttcattttaca
tgtctgttatccctttaaagattcatccataccaaaaaaagcttcataat
gacaggcatatttgtttcatttattttggctaatgcatgtccagtacata
gtttactctcaatactaatttgacataatttgaacaatttaatgaaatat
gtttacaaccatgtatatataaaaatattacaaggattaccacattttca
taaagcttttgatttatttgaaagggattgtaaattagcatgctaataag
acagcagcttattctaaacacatttgttaatatcctcatcactgcaggta
atcaatcaaaattgcttaatctgagcttttactgtcctcattgtttccag
catttcgtaaagaagcaagaaagatattaaccttaatcaaatgttctaaa
ttaactttaaatgaatattaagcacacacactgtgcttccccatcttaaa
agttttatagtgtagaattttcctgtgatttccattttaatgtaatttat
ccaaggacaaatatatgaaacattcatgagaatccattgtttttataaag
aaaacaagtaaaatctcaggtaaaataaagttagcagattttatagcata
gtatgtactcacattaaaaatttgaaatatgagaatgataataaaatata
aaatattataagcatatgaaaatacttgtgattattcaaaaaggaagaaa
ctttacatagtgttttaggaccaagttagttaaaatggtcaggtagtatt
ctcatttctctttgcaatatctagcctcaccaggatatcctgcacaacag
agcaggctttgaagttcacaaaatttgattcgacattggcatatcaacct
gacttcaaagagatttccactgctgaagagtttccctgagttcaagaaag
aatgaagaataccaactttctgtgaatctaacttcagagtccctcatact
tcaacaaaatagagattgaagtacattctatcagaatagagttgttggct
taatttgcctgtttattgaaa

gaattcaggaaatgtgtagaacagttaggattttgtgcaagtacaatagt
taccctaacccaagaaccccagtggaagcctaaaaacaggagtactcctg
aaagttctcagtactgttgtttctttacatgcatatctgaacctaacgcc
tcctcccaataggtaatatgctacagatcctccggccctacatggaggtg
tgcagtctttagaaggtgggatgtattgccaagaagtctagccacaggag
cagctagggcacctgggtttcttacaaatgccccagttctttctctttat
tgctgtttactcacaggttaaaattagactatttaagtcttgaaacatta
aagttaaaaagcaaacaacctattctgttttttttcttcccacataaaat
tgagaattgttctttccatgtctttgaagaattgtgctggaattttgatg
gggatcgcattgaatctgtagattgattttggtaggatgatcgtttttac
tatgttaattttaccaatccatgagcgtgggaggtcattccattttctga
ggtcttcttcaatttatatcttgagagacttgaagtacttgtcatacaga
tctttcacttgtttggttagagttaccccaggatattttatactatttgt
gactattctgaagagtgtggtttccctaatttttttccagcccatttacc
atttgtattatggaagtggggacatcatcttggagatgtgggagaaacaa
taggataaggaattgtcagaggatagaccaggaaggtgataaccactgga
ctgtaaaaaaagattaaggaatattaattttaaaaatgagaaaaattgaa
ataaaacagacttgttcttttgaaatgctctacaatatagctttggatga
gatagatctttaaattccatttgttccactaatttcatatttaaccatag
atacatcaacaatcagttcagaaactttcaattgaatatgcaatgcagct
gtctgcagctcccatagagcaatgatagcctccagtcagctttagctaag
ttagctttaaggaatgtaaggtttcttgaatatggatgaggcaaggaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_112506330_112507456
seq2: B6Ng01-311M04.b_47_1167

seq1  GAATTCTTCATTGTTGACCTTGCTAATCTTGCTGCACAATGTCTTTTTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCATTGTTGACCTTGCTAATCTTGCTGCACAATGTCTTTTTGC  50

seq1  AGTACTTTTATGTAACTTCTGTTCATGTTCTGTTGTTATTTCATTTTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTTTTATGTAACTTCTGTTCATGTTCTGTTGTTATTTCATTTTACA  100

seq1  TGTCTGTTATCCCTTTAAAGATTCATCCATACCAAAAAAAGCTTCATAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTTATCCCTTTAAAGATTCATCCATACCAAAAAAAGCTTCATAAT  150

seq1  GACAGGCATATTTGTTTCATTTATTTTGGCTAATGCATGTCCAGTACATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGCATATTTGTTTCATTTATTTTGGCTAATGCATGTCCAGTACATA  200

seq1  GTTTACTCTCAATACTAATTTGACATAATTTGAACAATTTAATGAAATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACTCTCAATACTAATTTGACATAATTTGAACAATTTAATGAAATAT  250

seq1  GTTTACAACCATGTATATATAAAAATATTACAAGGATTACCACATTTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACAACCATGTATATATAAAAATATTACAAGGATTACCACATTTTCA  300

seq1  TAAAGCTTTTGATTTATTTGAAAGGGATTGTAAATTAGCATGCTAATAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTTTTGATTTATTTGAAAGGGATTGTAAATTAGCATGCTAATAAG  350

seq1  ACAGCAGCTTATTCTAAACACATTTGTTAATATCCTCATCACTGCAGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGCTTATTCTAAACACATTTGTTAATATCCTCATCACTGCAGGTA  400

seq1  ATCAATCAAAATTGCTTAATCTGAGCTTTTACTGTCCTCATTGTTTCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATCAAAATTGCTTAATCTGAGCTTTTACTGTCCTCATTGTTTCCAG  450

seq1  CATTTCGTAAAGAAGCAAGAAAGATATTAACCTTAATCAAATGTTCTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCGTAAAGAAGCAAGAAAGATATTAACCTTAATCAAATGTTCTAAA  500

seq1  TTAACTTTAAATGAATATTAAGCACACACACTGTGCTTCCCCATCTTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTTTAAATGAATATTAAGCACACACACTGTGCTTCCCCATCTTAAA  550

seq1  AGTTTTATAGTGTAGAATTTTCCTGTGATTTCCATTTTAATGTAATTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTATAGTGTAGAATTTTCCTGTGATTTCCATTTTAATGTAATTTAT  600

seq1  CCAAGGACAAATATATGAAACATTCATGAGAATCCATTGTTTTTATAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGACAAATATATGAAACATTCATGAGAATCCATTGTTTTTATAAAG  650

seq1  AAAACAAGTAAAATCTCAGGTAAAATAAAGTTAGCAGATTTTATAGCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAGTAAAATCTCAGGTAAAATAAAGTTAGCAGATTTTATAGCATA  700

seq1  GTATGTACTCACATTAAAAATTTGAAATATGAGAATGATAATAAAATATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTACTCACATTAAAAATTTGAAATATGAGAATGATAATAAAATATA  750

seq1  AAATATTATAAGCATATGAAAATACTTGTGATTATTCAAAAAGGAAGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTATAAGCATATGAAAATACTTGTGATTATTCAAAAAGGAAGAAA  800

seq1  CTTTACATAGTGTTTTAGGACCAAGTTAGTTAAAATGGTCAGGTAGTATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACATAGTGTTTTAGGACCAAGTTAGTTAAAATGGTCAGGTAGTATT  850

seq1  CTCATTTCTCTTTGCAATATCTAGCCTCACCAGGATATCCTGCACAACAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTCTCTTTGCAATATCTAGCCTCACCAGGATATCCTGCACAACAG  900

seq1  AGCAGGCTTTGAAGTTCACAAAATTTGATTCGACATTGGCATATCAACCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGCTTTGAAGTTCACAAAATTTGATTCGACATTGGCATATCAACCT  950

seq1  GACTTCAAAGAGATTTCCACTGCTGAAGAGTTTCCCTGAGTTCAAGAAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCAAAGAGATTTCCACTGCTGAAGAGTTTCCCTGAGTTCAAGAAAG  1000

seq1  AATGAAGAATACCAACTTTCTGTGAAATCTAACTTCAGAGTCCCTCATAC  1050
      |||||||||||||||||||||||| |||||||||||||||||||||||| 
seq2  AATGAAGAATACCAACTTTCTGTG-AATCTAACTTCAGAGTCCCTCATA-  1048

seq1  CTTCAACAAAATAGAGATTTGAAAGTACAATTCTATCCAGATAGAGTTGT  1100
      |||||||||||||||||||   |||||| ||||||||   ||||||||||
seq2  CTTCAACAAAATAGAGATT--GAAGTAC-ATTCTATCAGAATAGAGTTGT  1095

seq1  TTGCTTTTAATTTG-CTGTTTATTGAAA  1127
      | ||  |||||||| |||||||||||||
seq2  TGGC--TTAATTTGCCTGTTTATTGAAA  1121


seq1: chr3_112631088_112632195
seq2: B6Ng01-311M04.g_67_1166 (reverse)

seq1  TCTTCCTGCCTTCATCCATATTC-AGGAACTTAACATTTCCTAAAGCTAC  49
      |||||||  | |||||||||||| || ||| | ||||| | |||||||| 
seq2  TCTTCCTTGCCTCATCCATATTCAAGAAACCTTACATTCCTTAAAGCTAA  50

seq1  CTAAGGCTAAAGCTGACTTGAAGCTATCCAATGCTCTATGGGAGCTGGCA  99
      || | ||||||||||||| || ||||| || ||||||||||||||| |||
seq2  CTTA-GCTAAAGCTGACTGGAGGCTAT-CATTGCTCTATGGGAGCT-GCA  97

seq1  GACAGCCTGGCATTGGCATATTCAA-TGGAAGTTTCTGAACTGATTTGTT  148
      ||||||   ||||| |||||||||| || ||||||||||||||| |||||
seq2  GACAGC--TGCATT-GCATATTCAATTGAAAGTTTCTGAACTGA-TTGTT  143

seq1  GATGTATTCTATGGTTAAATATGAAATTAGTGGAAACAAATGGAATTTAA  198
      |||||| |||||||||||||||||||||||||| ||||||||||||||||
seq2  GATGTA-TCTATGGTTAAATATGAAATTAGTGG-AACAAATGGAATTTAA  191

seq1  AGATCTTATCTCATCCAAAGCTATATTGTAGAGCATTTCAAAAGAACAAG  248
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATC-TATCTCATCCAAAGCTATATTGTAGAGCATTTCAAAAGAACAAG  240

seq1  TCTGTTTTATTTCAATTTTTCTCATTTTTAAAATTAATATTCCTTAATCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTATTTCAATTTTTCTCATTTTTAAAATTAATATTCCTTAATCT  290

seq1  TTTTTTACAGTCCAGTGGTTATCACCTTCCTGGTCTATCCTCTGACAATT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTACAGTCCAGTGGTTATCACCTTCCTGGTCTATCCTCTGACAATT  340

seq1  CCTTATCCTATTGTTTCTCCCACATCTCCAAGATGATGTCCCCACTTCCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATCCTATTGTTTCTCCCACATCTCCAAGATGATGTCCCCACTTCCA  390

seq1  TAATACAAATGGTAAATGGGCTGGAAAAAAATTAGGGAAACCACACTCTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACAAATGGTAAATGGGCTGGAAAAAAATTAGGGAAACCACACTCTT  440

seq1  CAGAATAGTCACAAATAGTATAAAATATCCTGGGGTAACTCTAACCAAAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATAGTCACAAATAGTATAAAATATCCTGGGGTAACTCTAACCAAAC  490

seq1  AAGTGAAAGATCTGTATGACAAGTACTTCAAGTCTCTCAAGATATAAATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAAAGATCTGTATGACAAGTACTTCAAGTCTCTCAAGATATAAATT  540

seq1  GAAGAAGACCTCAGAAAATGGAATGACCTCCCACGCTCATGGATTGGTAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGACCTCAGAAAATGGAATGACCTCCCACGCTCATGGATTGGTAA  590

seq1  AATTAACATAGTAAAAACGATCATCCTACCAAAATCAATCTACAGATTCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAACATAGTAAAAACGATCATCCTACCAAAATCAATCTACAGATTCA  640

seq1  ATGCGATCCCCATCAAAATTCCAGCACAATTCTTCAAAGACATGGAAAGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGATCCCCATCAAAATTCCAGCACAATTCTTCAAAGACATGGAAAGA  690

seq1  ACAATTCTCAATTTTATGTGGGAAGAAAAAAAACAGAATAGGTTGTTTGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTCTCAATTTTATGTGGGAAGAAAAAAAACAGAATAGGTTGTTTGC  740

seq1  TTTTTAACTTTAATGTTTCAAGACTTAAATAGTCTAATTTTAACCTGTGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAACTTTAATGTTTCAAGACTTAAATAGTCTAATTTTAACCTGTGA  790

seq1  GTAAACAGCAATAAAGAGAAAGAACTGGGGCATTTGTAAGAAACCCAGGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACAGCAATAAAGAGAAAGAACTGGGGCATTTGTAAGAAACCCAGGT  840

seq1  GCCCTAGCTGCTCCTGTGGCTAGACTTCTTGGCAATACATCCCACCTTCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTAGCTGCTCCTGTGGCTAGACTTCTTGGCAATACATCCCACCTTCT  890

seq1  AAAGACTGCACACCTCCATGTAGGGCCGGAGGATCTGTAGCATATTACCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTGCACACCTCCATGTAGGGCCGGAGGATCTGTAGCATATTACCT  940

seq1  ATTGGGAGGAGGCGTTAGGTTCAGATATGCATGTAAAGAAACAACAGTAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGAGGAGGCGTTAGGTTCAGATATGCATGTAAAGAAACAACAGTAC  990

seq1  TGAGAACTTTCAGGAGTACTCCTGTTTTTAGGCTTCCACTGGGGTTCTTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACTTTCAGGAGTACTCCTGTTTTTAGGCTTCCACTGGGGTTCTTG  1040

seq1  GGTTAGGGTAACTATTGTACTTGCACAAAATCCTAACTGTTCTACACATT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGGGTAACTATTGTACTTGCACAAAATCCTAACTGTTCTACACATT  1090

seq1  TCCTGAATTC  1108
      ||||||||||
seq2  TCCTGAATTC  1100


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