BAC Information

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BAC

Clone NameB6Ng01-311N03
Chromosome3 (Build37)
Map Location 75,737,843 - 75,854,028
singlet/doubletdoublet
Overlap geneGolph4
Upstream geneBC050789, Serpini2, Wdr49, Pdcd10, Serpini1
Downstream geneFstl5, LOC100041625, LOC100041635
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311N03.bB6Ng01-311N03.g
ACCGA103443GA103444
length1,005949
definitionB6Ng01-311N03.b B6Ng01-311N03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,853,026 - 75,854,028)(75,737,843 - 75,738,476)
sequence
gaattccttccacagatcaggcattaaacccaatcccaaaacattgagtt
acctctgaaatatttgtgttgtaattatgtccatgggtaataattgtgga
agccaagaaagttctaagtaaccctgtaaagagtagatgaatttcctaat
gattgtgtattgtttgacataggaatggacatgacaaggaagaatgcctc
agacccctgggaaattgacaatatattactcttgggtcaggattagagga
attgcaaagctttcctctggtccaagtgtgaatattgatagtgtgtgcag
atatgagtgtttatgagcaatggatagatcaatatatcaaaaactaggaa
ctgcacattcttcctctctcatgtttgcagtctgagacttgtccctttaa
gagatgaccagtggagtcaggttcctccccatttagttgcacacaattaa
caaactggagttctgagtctttggcagttgctacagttccattggagcac
acaaaacccacctgactccagtctacctgtacttgaatgtttgttatttc
ttctgtgtcaccattgttttcactctctcaccatctgagtcaggtcatat
tccctgatgtagggaatatatgaagatcttacaatttgtaagtcagggag
aagatacaggaagctagctgtattttctggacaggacagggctattgcac
ttctaaactcatagcatcttggttactggtacaaggcctgcagaagatag
taccaatgaatatataaccttaaattggtaaaggaacttaggccctcata
catagctgaggaattgataacttccagtaatagaagaatccattttatag
ggatgtagtccctgatgggttggccatgtgctattgaatggttccatatc
caggagtatggcgagcgcaataatgggattcagtgggttctatgtaaagt
tggtagaagggagacatgagtgggagaattccttaaagggattggaagag
agtga

gaattcacagaatagtgttaaaatcaccacacagtgatttaattctaaag
gtacatggatttaggaatacctaaatatgaacaaagtgctttctgcttca
cggaaatctatcataatgggacatgctttcatatataaaacaatcttgaa
taataaatgacctgcagaaggtaaaacagagaagcttcggcatgtcaaca
gagaccatcattcagacaaagtgacagcatcataatgaaaaaaaaacaaa
aaaaccaaaaaactggccaactacatatggacagacattagtacccaaaa
tatataaagaactataaaaactagacatcaggagtatacctaacccaatt
aagaatgggaaagtgatctaaaccatttttgaaagagggagttaaaatgg
ctgagaaacacataaagaaatgttcaacatttttagttatctgagaaatg
caaatcaatactactttgaaattccatcttatccctgtcagaatggctaa
gattaacaacacaagtgacagttcatgctgacaaggatatggagtaagag
gaacactcatccattggtggtgggaatgcacacttggaaggaaggccatt
gtggaaatcactgtggcggttcctaaggaatcgatttacctcaatagcca
gctacaccactcttggtcacataccaaaaggatgttccatcctatcacaa
agacacttgctcaaccttgatctgtttgttgctgctccattcataatagg
caaaactggaaacaaccttcatgaccttcaactgatgaatggataaagaa
atgtgttacatttacacaatgggaatattactctgctgatgaaaaataaa
attaaaaaaattcacaagtaaatggataggaataccagagttggataacc
taggaagacaaatatgatatgtatgttatctgttaagtcaataagcaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_75853026_75854028
seq2: B6Ng01-311N03.b_47_1051 (reverse)

seq1  TCACTCTC-TCCAAATCCTTTAA-GAATTCTCCCACTCATGTCTCCCTTC  48
      |||||||| |||||  ||||||| ||||||||||||||||||||||||||
seq2  TCACTCTCTTCCAATCCCTTTAAGGAATTCTCCCACTCATGTCTCCCTTC  50

seq1  TACCAACTTTACATAGAACCCACTGAATCCAATTATTGCGCTCGCCATAC  98
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TACCAACTTTACATAGAACCCACTGAATCCCATTATTGCGCTCGCCATAC  100

seq1  TCCTGGATATGGAACCATTCAATAGCACATGGCCAACCCATCAGGGACTA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGATATGGAACCATTCAATAGCACATGGCCAACCCATCAGGGACTA  150

seq1  CATCCCTATAAAATGGATTCTTCTATTACTGGAAGTTATCAATTCCTCAG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTATAAAATGGATTCTTCTATTACTGGAAGTTATCAATTCCTCAG  200

seq1  CTATGTATGAGGGCCTAAGTTCCTTTACCAATTTAAGGTTATATATTCAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTATGAGGGCCTAAGTTCCTTTACCAATTTAAGGTTATATATTCAT  250

seq1  TGGTACTATCTTCTGCAGGCCTTGTACCAGTAACCAAGATGCTATGAGTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACTATCTTCTGCAGGCCTTGTACCAGTAACCAAGATGCTATGAGTT  300

seq1  TAGAAGTGCAATAGCCCTGTCCTGTCCAGAAAATACAGCTAGCTTCCTGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTGCAATAGCCCTGTCCTGTCCAGAAAATACAGCTAGCTTCCTGT  350

seq1  ATCTTCTCCCTGACTTACAAATTGTAAGATCTTCATATATTCCCTACATC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTCCCTGACTTACAAATTGTAAGATCTTCATATATTCCCTACATC  400

seq1  AGGGAATATGACCTGACTCAGATGGTGAGAGAGTGAAAACAATGGTGACA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATATGACCTGACTCAGATGGTGAGAGAGTGAAAACAATGGTGACA  450

seq1  CAGAAGAAATAACAAACATTCAAGTACAGGTAGACTGGAGTCAGGTGGGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAAATAACAAACATTCAAGTACAGGTAGACTGGAGTCAGGTGGGT  500

seq1  TTTGTGTGCTCCAATGGAACTGTAGCAACTGCCAAAGACTCAGAACTCCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTGCTCCAATGGAACTGTAGCAACTGCCAAAGACTCAGAACTCCA  550

seq1  GTTTGTTAATTGTGTGCAACTAAATGGGGAGGAACCTGACTCCACTGGTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTAATTGTGTGCAACTAAATGGGGAGGAACCTGACTCCACTGGTC  600

seq1  ATCTCTTAAAGGGACAAGTCTCAGACTGCAAACATGAGAGAGGAAGAATG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTAAAGGGACAAGTCTCAGACTGCAAACATGAGAGAGGAAGAATG  650

seq1  TGCAGTTCCTAGTTTTTGATATATTGATCTATCCATTGCTCATAAACACT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTTCCTAGTTTTTGATATATTGATCTATCCATTGCTCATAAACACT  700

seq1  CATATCTGCACACACTATCAATATTCACACTTGGACCAGAGGAAAGCTTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCTGCACACACTATCAATATTCACACTTGGACCAGAGGAAAGCTTT  750

seq1  GCAATTCCTCTAATCCTGACCCAAGAGTAATATATTGTCAATTTCCCAGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTCCTCTAATCCTGACCCAAGAGTAATATATTGTCAATTTCCCAGG  800

seq1  GGTCTGAGGCATTCTTCCTTGTCATGTCCATTCCTATGTCAAACAATACA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGAGGCATTCTTCCTTGTCATGTCCATTCCTATGTCAAACAATACA  850

seq1  CAATCATTAGGAAATTCATCTACTCTTTACAGGGTTACTTAGAACTTTCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCATTAGGAAATTCATCTACTCTTTACAGGGTTACTTAGAACTTTCT  900

seq1  TGGCTTCCACAATTATTACCCATGGACATAATTACAACACAAATATTTCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCCACAATTATTACCCATGGACATAATTACAACACAAATATTTCA  950

seq1  GAGGTAACTCAATGTTTTGGGATTGGGTTTAATGCCTGATCTGTGGAAGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAACTCAATGTTTTGGGATTGGGTTTAATGCCTGATCTGTGGAAGG  1000

seq1  AATTC  1003
      |||||
seq2  AATTC  1005


seq1: chr3_75737843_75738476
seq2: B6Ng01-311N03.g_68_701

seq1  GAATTCACAGAATAGTGTTAAAATCACCACACAGTGATTTAATTCTAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGAATAGTGTTAAAATCACCACACAGTGATTTAATTCTAAAG  50

seq1  GTACATGGATTTAGGAATACCTAAATATGAACAAAGTGCTTTCTGCTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATGGATTTAGGAATACCTAAATATGAACAAAGTGCTTTCTGCTTCA  100

seq1  CGGAAATCTATCATAATGGGACATGCTTTCATATATAAAACAATCTTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAAATCTATCATAATGGGACATGCTTTCATATATAAAACAATCTTGAA  150

seq1  TAATAAATGACCTGCAGAAGGTAAAACAGAGAAGCTTCGGCATGTCAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAATGACCTGCAGAAGGTAAAACAGAGAAGCTTCGGCATGTCAACA  200

seq1  GAGACCATCATTCAGACAAAGTGACAGCATCATAATGAAAAAAAAACAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCATCATTCAGACAAAGTGACAGCATCATAATGAAAAAAAAACAAA  250

seq1  AAAACCAAAAAACTGGCCAACTACATATGGACAGACATTAGTACCCAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAAAAAACTGGCCAACTACATATGGACAGACATTAGTACCCAAAA  300

seq1  TATATAAAGAACTATAAAAACTAGACATCAGGAGTATACCTAACCCAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAAGAACTATAAAAACTAGACATCAGGAGTATACCTAACCCAATT  350

seq1  AAGAATGGGAAAGTGATCTAAACCATTTTTGAAAGAGGGAGTTAAAATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGGGAAAGTGATCTAAACCATTTTTGAAAGAGGGAGTTAAAATGG  400

seq1  CTGAGAAACACATAAAGAAATGTTCAACATTTTTAGTTATCTGAGAAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAACACATAAAGAAATGTTCAACATTTTTAGTTATCTGAGAAATG  450

seq1  CAAATCAATACTACTTTGAAATTCCATCTTATCCCTGTCAGAATGGCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCAATACTACTTTGAAATTCCATCTTATCCCTGTCAGAATGGCTAA  500

seq1  GATTAACAACACAAGTGACAGTTCATGCTGACAAGGATATGGAGTAAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAACAACACAAGTGACAGTTCATGCTGACAAGGATATGGAGTAAGAG  550

seq1  GAACACTCATCCATTGGTGGTGGGAATGCACACTTGGAAGGAAGGCCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACTCATCCATTGGTGGTGGGAATGCACACTTGGAAGGAAGGCCATT  600

seq1  GTGGAAATCACTGTGGCGGTTCCTAAGGAATCGA  634
      ||||||||||||||||||||||||||||||||||
seq2  GTGGAAATCACTGTGGCGGTTCCTAAGGAATCGA  634


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