BAC Information

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BAC

Clone NameB6Ng01-311O10
Chromosome3 (Build37)
Map Location 155,364,015 - 155,365,118
singlet/doubletsinglet
Overlap genenone
Upstream geneBC007180, Tnni3k, Fpgt, Lrrc44, EG383956, Scp2-ps1
Downstream geneEG668902, LOC624519, LOC100040901, 4930570G19Rik, Negr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311O10.bB6Ng01-311O10.g
ACCGA103505GA103506
length1,1791,103
definitionB6Ng01-311O10.b B6Ng01-311O10.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgagtggcagagaaacacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcatggatgtggagaaagaggaacactcactcctccattgtt
ggtgggagtgcaggcttgtacaaccactctggaaatcagtctggcggttc
ctcagaaaattggacatagtactaccagaggatccagcaatacctctcct
gggcatatatccagaagatgccccaactggtaagaaggacacatgctcca
ctatgttcatagcagccttatttataatagccagaagctggaaagaacct
agatgcccctcaacagaggaatggatacagaaaatgtggtacatctacac
aatggagtactactcagctattaaaaagaatgaatttatgaaattcctag
ccaaatggatggacctggagggcatcatcctgagtgaggtaacacattca
caaagaaactcacacaatatgtactcactgataagtggatattagcccca
aacctaggatacccaagatataagatataatttgctaaacacatgaaact
caagaagaatgaagactgaagtgtggacactatgcccctccttagatttg
ggaacaaaacacccatggaaggagttacagagacaaagtttggagctgag
atgaaaggatggtccatgtagagactgccatatccagggatccaccccat
aatcagcatccaaacgctgacaccattgcatacactagcaagattttatt
gaaaggacccagatgtagctgtctcttgtgagactatgcccggggcccta
gcaaacacagaagtgggatgctcacagtcagctaatggatggatcatagg
ctcccaatggaggagctagagaagtagccaaggagctaaagggatctgca
ccctaatagtggaacaacattatgactaccagtacccggagctctgactc
tagctgcatatatatcaaaagatgatagtcgacatccactggtaaagaga
gccaatgactgcaacttttatattgcccccagtcggtaactcatgtctaa
aaggggcttggtgtcagggagaaagtgtg
gaattccaggacagccagggctatatagagaaaccctgtctcaaaatgaa
gaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaaga
agaagaagaagaagaagaagaagaagaagaaggaattatgagaaggaaat
acaacttcactctatagccatatcacagcttttatttaggtagtttttct
tcttacaaatttcctttcatttcttttactaacattttattctaattgac
taataagtgaaaacattatacagccagtgtaaagaagctactcaaacatt
tgaccagttcctgactttttacatacttgtaaacttctacaaagtgagta
tggtcattctgaaaccatggatcacttgggaatttatatcttcaatacaa
attatcttcatgctcacttgttttgaaaattctgtgtttctaaagatgaa
gaaaaaagaaaaagctatgataaagaagaaaaacccatgataaagaaagt
aaagttttttctggcttctgaaatggagttttttcaagtttgaatgaata
ttctttagatttttaatcttgatgacacatttatggttatgataattagc
tctgtcaaaatgtataaacctgaattggccatagcagtccaatgtcagtc
tgaatgttacaattaccataatttaaatattattaatattcagattatag
acttagattaagcaggttaccttctttttatttcattaaaaaatacaatt
atcgggagcacctgggggagccatcttggttcccagattccgccgagact
agtctgcacaggtgagagtgtggactacagaagctaacagcttctggcac
atgcagaagccacagggtctgaggaagaccctgtttcgggctccagacat
ccgggcactttccctgccagaagagaggtgttcgcctggagggctttgcc
gagcacctggggcgagccatcttgggttcccagatcccaagactagtctg
ccacaggtgagagtgtgactacagagcttaactgctctgaacagaacatg
caatatctttccacaaatctgccctagagaagcaaggaagtaatcttcaa
caa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_155364015_155365118
seq2: B6Ng01-311O10.g_67_1169

seq1  GAATTCCAGGACAGCCAGGGCTATATAGAGAAACCCTGTCTCAAAAT---  47
      |||||||||||||||||||||||||||||||||||||||||||||||   
seq2  GAATTCCAGGACAGCCAGGGCTATATAGAGAAACCCTGTCTCAAAATGAA  50

seq1  GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA  97
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA  100

seq1  AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAATTATGAGAAGGAAAT  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAATTATGAGAAGGAAAT  150

seq1  ACAACTTCACTCTATAGCCATATCACAGCTTTTATTTAGGTAGTTTTTCT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTTCACTCTATAGCCATATCACAGCTTTTATTTAGGTAGTTTTTCT  200

seq1  TCTTACAAATTTCCTTTCATTTCTTTTACTAACATTTTATTCTAATTGAC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACAAATTTCCTTTCATTTCTTTTACTAACATTTTATTCTAATTGAC  250

seq1  TAATAAGTGAAAACATTATACAGCCAGTGTAAAGAAGCTACTCAAACATT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGTGAAAACATTATACAGCCAGTGTAAAGAAGCTACTCAAACATT  300

seq1  TGACCAGTTCCTGACTTTTTACATACTTGTAAACTTCTACAAAGTGAGTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAGTTCCTGACTTTTTACATACTTGTAAACTTCTACAAAGTGAGTA  350

seq1  TGGTCATTCTGAAACCATGGATCACTTGGGAATTTATATCTTCAATACAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCATTCTGAAACCATGGATCACTTGGGAATTTATATCTTCAATACAA  400

seq1  ATTATCTTCATGCTCACTTGTTTTGAAAATTCTGTGTTTCTAAAGATGAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTTCATGCTCACTTGTTTTGAAAATTCTGTGTTTCTAAAGATGAA  450

seq1  GAAAAAAGAAAAAGCTATGATAAAGAAGAAAAACCCATGATAAAGAAAGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAGAAAAAGCTATGATAAAGAAGAAAAACCCATGATAAAGAAAGT  500

seq1  AAAGTTTTTTCTGGCTTCTGAAATGGAGTTTTTTCAAGTTTGAATGAATA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTTTTCTGGCTTCTGAAATGGAGTTTTTTCAAGTTTGAATGAATA  550

seq1  TTCTTTAGATTTTTAATCTTGATGACACATTTATGGTTATGATAATTAGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAGATTTTTAATCTTGATGACACATTTATGGTTATGATAATTAGC  600

seq1  TCTGTCAAAATGTATAAACCTGAATTGGCCATAGCAGTCCAATGTCAGTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCAAAATGTATAAACCTGAATTGGCCATAGCAGTCCAATGTCAGTC  650

seq1  TGAATGTTACAATTACCATAATTTAAATATTATTAATATTCAGATTATAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTTACAATTACCATAATTTAAATATTATTAATATTCAGATTATAG  700

seq1  ACTTAGATTAAGCAGGTTACCTTCTTTTTATTTCATTAAAAAATACAATT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGATTAAGCAGGTTACCTTCTTTTTATTTCATTAAAAAATACAATT  750

seq1  ATCGGGAGCACCTGGGGGAGCCATCTTGGTTCCCAGATTCCGCCGAGACT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGGAGCACCTGGGGGAGCCATCTTGGTTCCCAGATTCCGCCGAGACT  800

seq1  AGTCTGCACAGGTGAGAGTGTGGACTACAGAAGCTAACAGCTTCTGGCAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGCACAGGTGAGAGTGTGGACTACAGAAGCTAACAGCTTCTGGCAC  850

seq1  ATGCAGAAGCCACAGGGTCTGAGGAAGACCCTGTTTCGGGCTCCAGACAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGAAGCCACAGGGTCTGAGGAAGACCCTGTTTCGGGCTCCAGACAT  900

seq1  CCGGGCACTTTCCCTGCCAGAAGAGAGGTGTTCGCCTGGGAGGGCTTTGC  947
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CCGGGCACTTTCCCTGCCAGAAGAGAGGTGTTCGCCT-GGAGGGCTTTGC  949

seq1  CGGAGCACCT-GGGCGAGCCATCTT-GGTTCCCAGATCCCAAGACTAGTC  995
      | |||||||| |||||||||||||| ||||||||||||||||||||||||
seq2  C-GAGCACCTGGGGCGAGCCATCTTGGGTTCCCAGATCCCAAGACTAGTC  998

seq1  TG-CACAGGTGAGAGTGTGGACTACAGAAGCTAACTGCTTCTGGAACAG-  1043
      || ||||||||||||||| |||||||||   ||||||| ||| |||||| 
seq2  TGCCACAGGTGAGAGTGT-GACTACAGAGCTTAACTGC-TCT-GAACAGA  1045

seq1  ACATGCAATATCTTTCCACAAATCCTGCCCTAGAAGAAGCAAGAAAGTAA  1093
      ||||||||||||||||||||||| ||||||||| ||||||||| ||||||
seq2  ACATGCAATATCTTTCCACAAAT-CTGCCCTAG-AGAAGCAAGGAAGTAA  1093

seq1  TCTTTCAACAA  1104
      || ||||||||
seq2  TC-TTCAACAA  1103