BAC Information

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BAC

Clone NameB6Ng01-311O21
Chromosome14 (Build37)3 (Build37)
Map Location 25,102,331 - 25,103,374144,604,528 - 144,605,055
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneKcnma1, LOC620499, Dlg5, LOC100039335
Downstream geneE330034G19Rik, LOC669325, Polr3a, Rps24, LOC669315, LOC100039411
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311O21.bB6Ng01-311O21.g
ACCGA103525GA103526
length1,0371,049
definitionB6Ng01-311O21.b B6Ng01-311O21.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(25,102,331 - 25,103,374)(144,604,528 - 144,605,055)
sequence
gaattcttctgtagagcccgagaccataaggtcttgaccaggagaacttt
tctctccctgttactagtgtcagacagccaaagtacctaaaggaaaccat
gggcagtgaagtgcactaatgccctgtcctgagatggggacacattagtt
ccccttccagcctcctgatggtctctgtttgtagccaagttacaagccca
agttccatgtagagttaaagcaagaatctcccagcacaacagtttcagcc
atgtgagctcccggctttggggatagacagactaatgttctggaatactt
cactttgagtagttatgataagcagggaacttcatttgctttccagaggc
tctacttcctgtgccccattactggaagactcagcccaagcccagctcat
ccaggaagagccacagcttctgtcccggactcactgtgccttcctcagca
ccatgtctttttttttctttctgttttgtactgagaaagtccagctttct
tctgcctctctctgatctctctctgctacccattctcccttaagtagact
cctcggttttgccaacatatctatggatgaaccctgtaggcactgaacgg
atgccctaaggatagctggtgttgctacaaccatagtgatatcatacaag
atgcaaagagctctgcaggatttaatagaacatccagagaagggattact
tcatgggggcactgtctctggaaggacaatgcctgtcacagctcagcagt
tactgaaggccaagtcagctcagctagtcctctgcaagaggagtcaaaag
gcagagattgaatttctttgagaaactgcttagacagaaagaaacatata
tacaatcagtagatcaccggtgagattgtcacctgccttcttcaccctag
tgcgaagaagaaaggatgacaatggggctggaaatgcagggtcttgggta
ccagactgagagctccacattaactctagatgggtgagtctctctctctc
tctctctctctctctctttctccctctctcatttctc

gaattccttataaccccatgggacaagaaattgttgaacgtgctcacaac
actctgaaaaattggcttttaaaaacaaaacaggggcagttataccctgc
aaagtcaccaaaagcacatcttgcttttgtcttgtttgttttaaattatt
ttgcaaactgatgttaaaggtcagtctgcagcagatcgccactggcatcc
agttacttccagttcttatgccatggttaaatggtgggacccattaacta
atacatggaatggtccagaccctgttttaatctggggaagaggttctatc
tgtgttttttcacaaaaagaagacagagcgcgatggctgcctgaaagact
ggttcgtcaagtggacacagatcccgaatcttctagtaagtatgattctt
aacttcgttgatggctaaaaaccctttttagctgaaaaagttaatttgga
gcacagcctccactttcagagaattttcagcttttctgctaattctcaaa
gtcacctccctcacactgggaggtcagagtctgagcttaatcgttgctat
tttgcaactgaataaagtacctggacttccccaaagaagcttttatcctg
atgtctttcaactatctcaactttgtttttcaagcaggtcagtctctcct
tacagcctgatttcagcaagcgtgcaacctcgcctccagcaaatgcaggt
ggcagaaattcatcaataggaagaaacatattaagtatatattgtggctt
tggtctgatttaggaataaggtgtgctaagagggctggtcagccaatgac
tcgcaaccagatttcggagctatatcaatctaagacagaggtacatgcca
agaggacgtggcttgttaataatacaacacagagccatgtttgtgtaaat
aaatacaaacaagctgcatgtatgctccttgacagatagagtggctcggg
gaaaacctgagtcaccaagccagccacatactccagcagactatggagca
taaataaatttttatatctggtccagctatttttattatataatggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_25102331_25103374
seq2: B6Ng01-311O21.b_48_1084

seq1  GAATTCTTCTGTAGAGCCCGAGACCATAAGGTCTTGACCAGGAGAACTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTGTAGAGCCCGAGACCATAAGGTCTTGACCAGGAGAACTTT  50

seq1  TCTCTCCCTGTTACTAGTGTCAGACAGCCAAAGTACCTAAAGGAAACCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCCTGTTACTAGTGTCAGACAGCCAAAGTACCTAAAGGAAACCAT  100

seq1  GGGCAGTGAAGTGCACTAATGCCCTGTCCTGAGATGGGGACACATTAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGTGAAGTGCACTAATGCCCTGTCCTGAGATGGGGACACATTAGTT  150

seq1  CCCCTTCCAGCCTCCTGATGGTCTCTGTTTGTAGCCAAGTTACAAGCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTCCAGCCTCCTGATGGTCTCTGTTTGTAGCCAAGTTACAAGCCCA  200

seq1  AGTTCCATGTAGAGTTAAAGCAAGAATCTCCCAGCACAACAGTTTCAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCATGTAGAGTTAAAGCAAGAATCTCCCAGCACAACAGTTTCAGCC  250

seq1  ATGTGAGCTCCCGGCTTTGGGGATAGACAGACTAATGTTCTGGAATACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAGCTCCCGGCTTTGGGGATAGACAGACTAATGTTCTGGAATACTT  300

seq1  CACTTTGAGTAGTTATGATAAGCAGGGAACTTCATTTGCTTTCCAGAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTGAGTAGTTATGATAAGCAGGGAACTTCATTTGCTTTCCAGAGGC  350

seq1  TCTACTTCCTGTGCCCCATTACTGGAAGACTCAGCCCAAGCCCAGCTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTTCCTGTGCCCCATTACTGGAAGACTCAGCCCAAGCCCAGCTCAT  400

seq1  CCAGGAAGAGCCACAGCTTCTGTCCCGGACTCACTGTGCCTTCCTCAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAAGAGCCACAGCTTCTGTCCCGGACTCACTGTGCCTTCCTCAGCA  450

seq1  CCATGTCTTTTTTTTTCTTTCTGTTTTGTACTGAGAAAGTCCAGCTTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTCTTTTTTTTTCTTTCTGTTTTGTACTGAGAAAGTCCAGCTTTCT  500

seq1  TCTGCCTCTCTCTGATCTCTCTCTGCTACCCATTCTCCCTTAAGTAGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCTCTCTGATCTCTCTCTGCTACCCATTCTCCCTTAAGTAGACT  550

seq1  CCTCGGTTTTGCCAACATATCTATGGATGAACCCTGTAGGCACTGAACGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGGTTTTGCCAACATATCTATGGATGAACCCTGTAGGCACTGAACGG  600

seq1  ATGCCCTAAGGATAGCTGGTGTTGCTACAACCATAGTGATATCATACAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCTAAGGATAGCTGGTGTTGCTACAACCATAGTGATATCATACAAG  650

seq1  ATGCAAAGAGCTCTGCAGGATTTAATAGAACATCCAGAGAAGGGATTACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAAGAGCTCTGCAGGATTTAATAGAACATCCAGAGAAGGGATTACT  700

seq1  TCATGGGGGCACTGTCTCTGGAAGGACAATGCCTGTCACAGCTCAGCAGG  750
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCATGGGGGCACTGTCTCTGGAAGGACAATGCCTGTCACAGCTCAGCA-G  749

seq1  TTACTGAAGGCCAAGTCAGCTCAGCTAGTCCTCTGCAAGAGGAGTCAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGAAGGCCAAGTCAGCTCAGCTAGTCCTCTGCAAGAGGAGTCAAAA  799

seq1  GGCAGGAGATTGAATTTCTTTGAGAAACTGCTTAGACAGAAAGAAACATA  850
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCA-GAGATTGAATTTCTTTGAGAAACTGCTTAGACAGAAAGAAACATA  848

seq1  TATACAATCAGTAGATCACCGGTGAGATTGTCACCTGCCTTCTTCACCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAATCAGTAGATCACCGGTGAGATTGTCACCTGCCTTCTTCACCCT  898

seq1  AGTGCGAAGAAGAAAGGATGACAATGGGGCTGGAAATGCAGGGTCTTGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCGAAGAAGAAAGGATGACAATGGGGCTGGAAATGCAGGGTCTTGGG  948

seq1  TACCAGACTGAGGAGGCTTCCACCATTAACTTCTAGAAGGGGTGAGTCTC  1000
      ||||||||||| |||   |||| ||||||| ||||| | |||||||||||
seq2  TACCAGACTGA-GAG--CTCCA-CATTAAC-TCTAG-ATGGGTGAGTCTC  992

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTC-TTTCTC  1044
      |||||||||||||||||||||||||||||| ||||||| ||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTTTCTCCCTCTCTCATTTCTC  1037


seq1: chr3_144604528_144605055
seq2: B6Ng01-311O21.g_620_1118 (reverse)

seq1  CCCCCTGATTATATAATAAAAATAGCTGGACCAAGACAT-AAAATTTGTT  49
      |||||  ||||||||||||||||||||||||| ||| || ||||||| ||
seq2  CCCCC--ATTATATAATAAAAATAGCTGGACC-AGATATAAAAATTTATT  47

seq1  TATGTGCCATAGTCCTTCCTGGGAGGTATGGTGGCTGGTGGCCCTGCCTG  99
      ||||  ||||||||  | ||||   |||||              || |||
seq2  TATGCTCCATAGTC--TGCTGG--AGTATG--------------TGGCTG  79

seq1  GCTTAGGAAATCTCAGATTTT-CCCGAGCCATTCTTATCTGTCAAGGAGC  148
      |||| |  |  ||||| |||| ||||||||| || |||||||||||||||
seq2  GCTTGGTGA--CTCAGGTTTTCCCCGAGCCACTC-TATCTGTCAAGGAGC  126

seq1  ATACATGCAGCTTGTTTGTGTGTTTTTTTTTTTTACACAAACATGGCTCT  198
      ||||||||||||||||||       | ||| |||||||||||||||||||
seq2  ATACATGCAGCTTGTTTG-------TATTTATTTACACAAACATGGCTCT  169

seq1  GTGGTGTATTATTAACAAACCACAGCCTCTTGGCATGTACCTTTGTCTTA  248
      ||| |||||||||||||| ||||  ||||||||||||||||| |||||||
seq2  GTGTTGTATTATTAACAAGCCACGTCCTCTTGGCATGTACCTCTGTCTTA  219

seq1  GATTGATATAGCTCTGAAATCTGGTTGCCCATCATTGACTGTCCGGCCCT  298
      |||||||||||||| |||||||||||||   |||||| ||| || |||||
seq2  GATTGATATAGCTCCGAAATCTGGTTGCGAGTCATTGGCTGACCAGCCCT  269

seq1  CGTAGCACACCTTATTCCCAAATCAGACCAAAGCCACAATATATTCTTAA  348
      | |||||||||||||||| ||||||||||||||||||||||||| |||||
seq2  CTTAGCACACCTTATTCCTAAATCAGACCAAAGCCACAATATATACTTAA  319

seq1  TATGCTTCTTCATATTGATAAATTTCTGCCACCTGCGCTTGCTGGAGGCG  398
      |||| |||||| ||||||| ||||||||||||||||  ||||||||||||
seq2  TATGTTTCTTCCTATTGATGAATTTCTGCCACCTGCATTTGCTGGAGGCG  369

seq1  AAGCTGCATGCTTGCTGAAATCAGGCTGTAAGGAGAGACTGACCTGCTTG  448
      | | |||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGCACGCTTGCTGAAATCAGGCTGTAAGGAGAGACTGACCTGCTTG  419

seq1  AAAAACAAAGTCGAGATAGTTGAAAAGCAACATGATAAAAGTTTCTTTGT  498
      ||||||||||| |||||||||||||  || || |||||||| ||||||| 
seq2  AAAAACAAAGTTGAGATAGTTGAAAGACATCAGGATAAAAGCTTCTTTGG  469

seq1  GAAAATCCAGCTACTTTATTCAGTTGCAAA  528
      | || ||||| |||||||||||||||||||
seq2  GGAAGTCCAGGTACTTTATTCAGTTGCAAA  499


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