BAC Information

Click to search

BAC

Clone NameB6Ng01-311P11
Chromosome3 (Build37)
Map Location 79,867,175 - 79,867,660
singlet/doubletsinglet
Overlap genenone
Upstream geneRapgef2, LOC100041741, LOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik, Rxfp1, Tmem144, 1110032E23Rik
Downstream geneEG626797, Gria2, Glrb, EG626841, Pdgfc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311P11.bB6Ng01-311P11.g
ACCGA103553GA103554
length1,110917
definitionB6Ng01-311P11.b B6Ng01-311P11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagcccaattttaatggggttatttgatttt
ctgaagtccaccttcttgagttctttatatatgttggatattaatcccct
atctgatttaggataggtaaagatcctttcccaatctgttggtggtcttt
ttgtcttattgacggtgtcttttgccttgcagaaactttggagtttcatt
aggtcccatttgtcaattctcgatcttacagcacaagccattgctgttct
gttcagggatttttctcctgtgcccatatcttcaaggcttttccccactt
tctcctctacaagtttcagtgtctctggttttatgtgaagttccttgatc
cacttagatttgaccttagtacaaggagataagtatgaatcgattcgcat
tcttctacacgataacaaccagttgtgccagcaccaattgttgaaaatgc
tgtctttcttccactggatggtattagctcccttgtcgaagatcaagtga
ccataggtgtgtgggttcatttctgggtcttcaattctattccattggtc
tacttgtctgtctctataccagtaccatgcagtttttatcacaattgctc
tgtagtacagctttaggtctagcatggtgattccgccagaagttctttta
tccttgagaagactttttgctatcctaggttttttgttattccagacgaa
tttgcaaattgctccttccaattcgttgaagaattgagttggaattttga
tggggattgcattgaatctgtagattgcttttggcaagatagccattttt
tacaatgttgatcctgccaatcaatgagcatggaaatctttccattcttc
tgagatcttctttaatttctttctcagagattgaagtttttatcataaca
gaatctttcacctccttagtagagtcacgccagatattttattattaatt
gtgactattgagagggtgttgttccctagttcttctcagctgttttatct
tgtatgagaagcattgactgttgagtatatttaatcagctcacttcacgg
actgttacagtagattctcgtcaaagtttaggcatatcattcatatcctg
cgcatgggat
gaattctcttccttcccaaaacattctgataatattttaaaattttactg
ttgtgtatgtttgtgtgcataatatatgtgtgtacaaaacatgcatgtct
agtacccacattggcgagaagaacatgttggatgctctgaaatttactta
taggtggtggataaccactgtgtgtctgctgggaactaaactcggatcct
tttctttctttttttttatttaaacaattatttattagatattttcttaa
tttacaattaaaatgctatcccaaaaactcccctatgcccccctcccccc
actgaactgctccccaacccacccactcctgcttcctggccctggcattc
ccctgtactggggcatagaatctttgcaagaccaagggcatctcctccca
gtgatggccaattaggccatcttctgctacatatgcagctagagacacaa
gctcacggggtactggttagtttatattgctgctcctcctatagggttac
agacatcttggagtccttgggtactctctctagctcctccattgggggcc
ctgtgttccatacaatggatgactgtgagcattgacttctgtatttgcca
ggcactggcatagcctaccaagagacagctatataagggtcctgtcagca
aaatcttgctggcatatgcaatagtatctgtatttggtggctgattatgg
tatgtctctgcatggtccttccttcaatctcagctccaaatgttgtctct
gtaattccttacatgggtattttgttccccattctaaggagggatgaagt
atccacactttggtcttccttcttcttgagtttcatgtattttgcaaatt
gtatcttgggtattctaagtttctgggctatatccactttattggtgagt
acatatcatgtgagttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_79867175_79867660
seq2: B6Ng01-311P11.g_279_772

seq1  TTTTTTTATTTAAACAATTTTTTATTAGATATTTTCTTCATTTATATTTC  50
      ||||||||||||||||||| |||||||||||||||||| ||||| | || 
seq2  TTTTTTTATTTAAACAATTATTTATTAGATATTTTCTTAATTTACAATTA  50

seq1  AAATGCTATCCC-CAAAGTCCCTTAT-ACTCCCACCCCCCAC---CCTGC  95
      ||||||||||||  ||| |||| |||  | ||| ||||||||    ||||
seq2  AAATGCTATCCCAAAAACTCCCCTATGCCCCCCTCCCCCCACTGAACTGC  100

seq1  TCCCCAACCCACCCACTCCTACTTCTTGGCCCTGGCATTCCCCTGTACTG  145
      |||||||||||||||||||| |||| ||||||||||||||||||||||||
seq2  TCCCCAACCCACCCACTCCTGCTTCCTGGCCCTGGCATTCCCCTGTACTG  150

seq1  GGGCATATGATCTTTGCAAGACCAAGGACCTCTCCTCCCAGTGATGGCCA  195
      |||||||  |||||||||||||||||| | ||||||||||||||||||||
seq2  GGGCATAGAATCTTTGCAAGACCAAGGGCATCTCCTCCCAGTGATGGCCA  200

seq1  ACTAGGCCATCTTCTGCTACCTATGCAGCTAGAAATATGAGCTCAGGGGG  245
      | |||||||||||||||||| |||||||||||| | |  |||||| ||||
seq2  ATTAGGCCATCTTCTGCTACATATGCAGCTAGAGACACAAGCTCACGGGG  250

seq1  TACTGGTTAGTTCATATTGCTGTTTCTCCTATAGGGTTA---ACCCCTTC  292
      |||||||||||| ||||||||| | ||||||||||||||   ||  ||| 
seq2  TACTGGTTAGTTTATATTGCTGCTCCTCCTATAGGGTTACAGACATCTTG  300

seq1  AGCTCCTTAGGTACTTTCTCTAGCTCCTCCATTGAGGACCCTGTGTTCCA  342
         ||||| |||||| |||||||||||||||||| || ||||||||||||
seq2  GAGTCCTTGGGTACTCTCTCTAGCTCCTCCATTGGGGGCCCTGTGTTCCA  350

seq1  TCCAATAGATGACTGTGAGCATCCACTTCTGTATTTGCCAGGCACTGGCA  392
      | |||| |||||||||||||||  ||||||||||||||||||||||||||
seq2  TACAATGGATGACTGTGAGCATTGACTTCTGTATTTGCCAGGCACTGGCA  400

seq1  TAGCCTCATAAGAGACAGCTATATTAGGGTCCTGTCAGCAAAATCTTGCT  442
      ||||||   ||||||||||||||| |||||||||||||||||||||||||
seq2  TAGCCTACCAAGAGACAGCTATATAAGGGTCCTGTCAGCAAAATCTTGCT  450

seq1  GGCATATGCAATAGTGTCTGCGTTTGGTGGTTGATTATGGTATG  486
      ||||||||||||||| ||||  |||||||| |||||||||||||
seq2  GGCATATGCAATAGTATCTGTATTTGGTGGCTGATTATGGTATG  494