BAC Information

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BAC

Clone NameB6Ng01-312B16
Chromosome3 (Build37)
Map Location 91,516,739 - 91,660,513
singlet/doubletdoublet
Overlap geneLOC100042463
Upstream geneLOC383949, Pglyrp4, LOC329706, EG545541, LOC635737, EG668174, LOC668179, LOC635756, 4930529C04Rik, 9130204L05Rik
Downstream genePglyrp3, EG619750, Lor, A030004J04Rik, Sprr2a, LOC100042999, LOC545543, LOC100043005, LOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-312B16.bB6Ng01-312B16.g
ACCGA103654GA103655
length1,162965
definitionB6Ng01-312B16.b B6Ng01-312B16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,659,349 - 91,660,513)(91,516,739 - 91,517,601)
sequence
gaattcattgggggaagttgtgtgcagctgagcaagtgctgtgtatgata
atcttctgttgtttgctggacaattagtgaggacatgggaatgaaagggt
ctgtatctcaagagtgtgtatgaatgaattgtaatattgaacaatcttgg
catatgttctataaggactagcactaatgttcatttccaagggcatgaca
ctgatacctgaagtgaaatgcagaccagagacatttttagggaattattg
ttacttgctccctgcatcagtcatctcattccaagtgttccaacggaggg
ggttttgtggatttgatgggatttcttggccttaagtatacctggaggac
aagtttctaagcagtcttctttccaccataaaacacctctaaatatgtat
aagacattatcctcaaagaagaagtaatgagataatttatcaaagactcc
ctggaattttctgtcttatagagcagtaacacctagaggaagaaaattct
ctctggcctagtctacaactgtcaatttcatttagtggtcctacatttgg
ttcctagggttccctgctgtatagtgccctggttcatagaccagtacctg
gcatacaactttcaccagggagagcatacacattttacccagttcacagg
gaattcaatttgttacatggctattgaaaaaatcttataatcaagtatgt
acaatttctaacttatatgatgaatctaggtacccatctacagatgaata
gataaaattttctcttttaagcacccaatatacgtgcggaattttattta
actctgagactgataaaatcctgttcttgttaggaataacacattgtcct
gttaaacaaaattaatcagtatgacaaagaggaatattgccagttatgtg
cagtaaaataaggtcttggaagtaaaagtcacattgtagggaggttaaga
aggggaattgtgttgagcatcgggaaaggctaatgaagtgagtaaaatag
tacagtgcattttgtttattatgatatgtgacaatgaaacccattacttc
atatgaatatccaacacatcatcaatttaaatcaagagccagtcttcctg
tgtcctaagaatcctgtaagcctggctctaattgggactaactaggaagt
gattctcaagtt
gaattctcttcttctaggtgttactgctctataagacagacaatcccaga
cagtctttgatgaaatatctcattacttctttctttgaggatagtgtctt
atacacatttagaggtgttttagtgtggaaaagaagacactttctagttc
cttagtctttgctattatggatacctcatcttcataagcaggacctttgg
gtgttgtcacaatcctctccatgggatggtgtaagtaaatgttccatgac
atgaaaggggtcagaagtagattaaatgtcaaagattcttagatattatg
gagattgatgaaccaaactgatcttaacaagttttggtttgtttttgatt
gtatgttttgttttgtcttgttttggatatttgagacagtgtttctctgt
gtagccctggctgtcctggaactcactttgtagaccaggctggactcaaa
ctcagaaatccacctccctctccctctcaagtgctaggattaaaggtgtg
tgctgaatcccttccggtctggccagtactgggatagctagggcgcagag
taggctgacaccctccagctaaccacaagacctgccacgggatcttaaga
cctctggtgagtggcacactgcatctggtccaatccaatcgcatgggacc
tgaaactgcattagttagggaagcaaaaatcccagtctgatcaggggcaa
aagtcccgtctggtaaatgccatcacagggggattttgggcgtggagtcc
gtggacaactgtaaggtatacacaggacgctccacgggatctgaagacct
ctgtgagtggatcacaaactctgccaggagacaggttcgaataccagata
ttggggtaccttccctgcaagaggagagcctacctgaagagagtactctg
agaaatgaaactcaagagagtgctagtctcccaggcctgctaatagaggc
taaaataaacacctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_91659349_91660513
seq2: B6Ng01-312B16.b_48_1209 (reverse)

seq1  AACTCTGAGTATCACTTCCTAAGTTTAGTCCAAATTTGAGCCCAGCTCTA  50
      |||| |||| |||||||||||   ||||||| |||| |||||  ||| ||
seq2  AACT-TGAGAATCACTTCCTA--GTTAGTCCCAATTAGAGCCAGGCT-TA  46

seq1  CAGGA-TCTTAGGACACA-GAAGACTGCTCTTTTGATTTTAATTGATTGG  98
      ||||| |||||||||||| ||||||||  || ||||||| |||||| || 
seq2  CAGGATTCTTAGGACACAGGAAGACTG-GCTCTTGATTTAAATTGA-TGA  94

seq1  TGTTGTTGGATATTCATTATGAAGTAATGGGTTTCATTGTCACATATCAT  148
      || ||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TG-TGTTGGATATTCA-TATGAAGTAATGGGTTTCATTGTCACATATCAT  142

seq1  -ATTAACAAAATGCACTTGTACTATTTTTACTCACTTCATTAGCCTTTCC  197
       || |||||||||||| ||||||| |||||||||||||||||||||||||
seq2  AATAAACAAAATGCAC-TGTACTA-TTTTACTCACTTCATTAGCCTTTCC  190

seq1  CG-TGCTC-ACAC-ATTCCCTTCTTTAACCTCCCTACAATGTGACTTTTA  244
      || ||||| |||| |||||| |  ||||||||||||||||||||||||||
seq2  CGATGCTCAACACAATTCCCCTTCTTAACCTCCCTACAATGTGACTTTTA  240

seq1  CTTCC-AGACCTTATTTTACTGCACATAACTGGCAATATTCCTCTTTGTC  293
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAAGACCTTATTTTACTGCACATAACTGGCAATATTCCTCTTTGTC  290

seq1  ATACTGATTAATTTTGTTTAACAGGACAATGTGTTATTCCTAACAAGAAC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGATTAATTTTGTTTAACAGGACAATGTGTTATTCCTAACAAGAAC  340

seq1  AGGATTTTATCAGTCTCAGAGTTAAATAAAATTCCGCACGTATATTGGGT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTTATCAGTCTCAGAGTTAAATAAAATTCCGCACGTATATTGGGT  390

seq1  GCTTAAAAGAGAAAATTTTATCTATTCATCTGTAGATGGGTACCTAGATT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAAAGAGAAAATTTTATCTATTCATCTGTAGATGGGTACCTAGATT  440

seq1  CATCATATAAGTTAGAAATTGTACATACTTGATTATAAGATTTTTTCAAT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATATAAGTTAGAAATTGTACATACTTGATTATAAGATTTTTTCAAT  490

seq1  AGCCATGTAACAAATTGAATTCCCTGTGAACTGGGTAAAATGTGTATGCT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATGTAACAAATTGAATTCCCTGTGAACTGGGTAAAATGTGTATGCT  540

seq1  CTCCCTGGTGAAAGTTGTATGCCAGGTACTGGTCTATGAACCAGGGCACT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGGTGAAAGTTGTATGCCAGGTACTGGTCTATGAACCAGGGCACT  590

seq1  ATACAGCAGGGAACCCTAGGAACCAAATGTAGGACCACTAAATGAAATTG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGCAGGGAACCCTAGGAACCAAATGTAGGACCACTAAATGAAATTG  640

seq1  ACAGTTGTAGACTAGGCCAGAGAGAATTTTCTTCCTCTAGGTGTTACTGC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTGTAGACTAGGCCAGAGAGAATTTTCTTCCTCTAGGTGTTACTGC  690

seq1  TCTATAAGACAGAAAATTCCAGGGAGTCTTTGATAAATTATCTCATTACT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAAGACAGAAAATTCCAGGGAGTCTTTGATAAATTATCTCATTACT  740

seq1  TCTTCTTTGAGGATAATGTCTTATACATATTTAGAGGTGTTTTATGGTGG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTTGAGGATAATGTCTTATACATATTTAGAGGTGTTTTATGGTGG  790

seq1  AAAGAAGACTGCTTAGAAACTTGTCCTCCAGGTATACTTAAGGCCAAGAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGACTGCTTAGAAACTTGTCCTCCAGGTATACTTAAGGCCAAGAA  840

seq1  ATCCCATCAAATCCACAAAACCCCCTCCGTTGGAACACTTGGAATGAGAT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCATCAAATCCACAAAACCCCCTCCGTTGGAACACTTGGAATGAGAT  890

seq1  GACTGATGCAGGGAGCAAGTAACAATAATTCCCTAAAAATGTCTCTGGTC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGATGCAGGGAGCAAGTAACAATAATTCCCTAAAAATGTCTCTGGTC  940

seq1  TGCATTTCACTTCAGGTATCAGTGTCATGCCCTTGGAAATGAACATTAGT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTCACTTCAGGTATCAGTGTCATGCCCTTGGAAATGAACATTAGT  990

seq1  GCTAGTCCTTATAGAACATATGCCAAGATTGTTCAATATTACAATTCATT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTCCTTATAGAACATATGCCAAGATTGTTCAATATTACAATTCATT  1040

seq1  CATACACACTCTTGAGATACAGACCCTTTCATTCCCATGTCCTCACTAAT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACACTCTTGAGATACAGACCCTTTCATTCCCATGTCCTCACTAAT  1090

seq1  TGTCCAGCAAACAACAGAAGATTATCATACACAGCACTTGCTCAGCTGCA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAGCAAACAACAGAAGATTATCATACACAGCACTTGCTCAGCTGCA  1140

seq1  CACAACTTCCCCCAATGAATTC  1165
      ||||||||||||||||||||||
seq2  CACAACTTCCCCCAATGAATTC  1162

seq1: chr3_91516739_91517601
seq2: B6Ng01-312B16.g_68_930

seq1  GAATTCTCTTCTTCTAGGTGTTACTGCTCTATAAGACAGACAATCCCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCTTCTAGGTGTTACTGCTCTATAAGACAGACAATCCCAGA  50

seq1  CAGTCTTTGATGAAATATCTCATTACTTCTTTCTTTGAGGATAGTGTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTTGATGAAATATCTCATTACTTCTTTCTTTGAGGATAGTGTCTT  100

seq1  ATACACATTTAGAGGTGTTTTAGTGTGGAAAAGAAGACACTTTCTAGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACATTTAGAGGTGTTTTAGTGTGGAAAAGAAGACACTTTCTAGTTC  150

seq1  CTTAGTCTTTGCTATTATGGATACCTCATCTTCATAAGCAGGACCTTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTCTTTGCTATTATGGATACCTCATCTTCATAAGCAGGACCTTTGG  200

seq1  GTGTTGTCACAATCCTCTCCATGGGATGGTGTAAGTAAATGTTCCATGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGTCACAATCCTCTCCATGGGATGGTGTAAGTAAATGTTCCATGAC  250

seq1  ATGAAAGGGGTCAGAAGTAGATTAAATGTCAAAGATTCTTAGATATTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGGGGTCAGAAGTAGATTAAATGTCAAAGATTCTTAGATATTATG  300

seq1  GAGATTGATGAACCAAACTGATCTTAACAAGTTTTGGTTTGTTTTTGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTGATGAACCAAACTGATCTTAACAAGTTTTGGTTTGTTTTTGATT  350

seq1  GTATGTTTTGTTTTGTCTTGTTTTGGATATTTGAGACAGTGTTTCTCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTTTTGTTTTGTCTTGTTTTGGATATTTGAGACAGTGTTTCTCTGT  400

seq1  GTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGACTCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGACTCAAA  450

seq1  CTCAGAAATCCACCTCCCTCTCCCTCTCAAGTGCTAGGATTAAAGGTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAATCCACCTCCCTCTCCCTCTCAAGTGCTAGGATTAAAGGTGTG  500

seq1  TGCTGAATCCCTTCCGGTCTGGCCAGTACTGGGATAGCTAGGGCGCAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAATCCCTTCCGGTCTGGCCAGTACTGGGATAGCTAGGGCGCAGAG  550

seq1  TAGGCTGACACCCTCCAGCTAACCACAAGACCTGCCACGGGATCTTAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTGACACCCTCCAGCTAACCACAAGACCTGCCACGGGATCTTAAGA  600

seq1  CCTCTGGTGAGTGGCACACTGCATCTGGTCCAATCCAATCGCATGGGACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGGTGAGTGGCACACTGCATCTGGTCCAATCCAATCGCATGGGACC  650

seq1  TGAAACTGCATTAGTTAGGGAAGCAAAAATCCCAGTCTGATCAGGGGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTGCATTAGTTAGGGAAGCAAAAATCCCAGTCTGATCAGGGGCAA  700

seq1  AAGTCCCGTCTGGTAAATGCCATCACAGGGGGATTTTGGGCGTGGAGTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCCGTCTGGTAAATGCCATCACAGGGGGATTTTGGGCGTGGAGTCC  750

seq1  GTGGACAACTGTAAGGTATACACAGGACGCTCCACGGGATCTGAAGACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACAACTGTAAGGTATACACAGGACGCTCCACGGGATCTGAAGACCT  800

seq1  CTGTGAGTGGATCACAAACTCTGCCAGGAGACAGGTTCGAATACCAGATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGTGGATCACAAACTCTGCCAGGAGACAGGTTCGAATACCAGATA  850

seq1  TTGGGGTACCTTC  863
      |||||||||||||
seq2  TTGGGGTACCTTC  863