BAC Information

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BAC

Clone NameB6Ng01-312E01
Chromosome3 (Build37)
Map Location 46,259,566 - 46,356,346
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC433580, LOC671801, EG241989
Downstream geneLOC545517, LOC383849, LOC383850, LOC100039426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-312E01.bB6Ng01-312E01.g
ACCGA103768GA103769
length1,1401,104
definitionB6Ng01-312E01.b B6Ng01-312E01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,259,566 - 46,260,716)(46,355,277 - 46,356,346)
sequence
gaattcttttatcagtatccaaaaagcaatgaattgtgatgttttcttta
cagtacagcaaaatccaaggcccttccttactctttacattataagcaat
gaagacagaatcctgacaaagacagagcttttagaaaatatggactgaag
ataatcaagaagagaattacaaaatgaaaacaaggagaatttagatttga
cagtaaaatatttgaccaaatagaataaacaataaaaaagcaggtagtct
tttttctcaaaggtaaactcgatcataaagtgctattcaaacatgttagt
atcagcttatagaaaggttttatagctgaataaattcatatgctcaactc
agagtttctctgattctttgataggagtgagggtacagagaaaagtgaag
gttatagaaagctaaggtaaatgaaacaatggtttattagtagaccttga
gtaaatttaatatattaatctgttaactctatgcctgaattgactagtcc
ttgaagaactaaatttatgttatgaaattaaatattaactacttagatgt
tcatatacaaaaccatattaaaattaaccttcagtgaaatttgtcctcgg
gtcataaatggctgcatcttacaaaatatcttaggctctcagagaacacc
cttattaaatatcactcacttaagacattgaaaacattgtcttacccact
tccaggagaaagtattactgtcttttttattgtctactgggaccagataa
tagctgtgttagctagaacattatactttgttgctgaccttttgacccag
gtagtttgtagtttgatgaactaaatctcttatcacaagcacattcaaag
agaacctgatattcaagatatccaatgacattttataccccatcctatct
gaagagttccagtattgtttagatttgacatgttctcagaatttccttcc
tcagttattcctggcacaaatatagaagaattttacaccttaaatgtgct
gtgtcagtctatgaaatctcttgctacatcagatatggtcagatttaaca
tagagactaatatagactatgtttcttggcagaatatcaatgctctcaca
aaaacatcgtatgtctcatgtaacttgtcattgaacctgc

gaattcttctgcttctctacctttctctatcatatctaaagacagagaga
ttctgtgtaatcttggcgaattagtgaagcttcaaaaaccagccttgtga
taaagggcatgggggagtagtgttatggaataaaccctaagttgctttca
gagaagaagatatgttgtctttcaagtgctccctgctttgccaaaacatt
caatgaactggccttgaggcaggtgggcagactcagactcagtgcaggtc
aacacagaagcatgatgcatgcatgtgggcatacgtgtatgtgtgtgtgt
gtgtgtgtgtgtgtatctttgtatgtgtcagagagagaaagagagatcaa
gatagacacctacaaagaagtgtagaaacaaatataaaatcattttcttg
ttctacattatgaaatgtagagtgaattatcataatttcttacttctacc
tatagagtgacatcttgcaacactgtactcgctgtctttttcccttcatt
ctccagtgtctgacaagcacctgcttactgaaacttgtcaatcactgtta
atagtcttgcatgtgaatctcatgatgtgatgatgcacactgtatgtact
taccaggatgttccgtgatttgaagaaatgggtaatgctatgaattagga
cagtaaatatgagattctgattttcacccccccccaaaaaataaatgaac
ctaagttagtatgcatttatgaatggggatgttattttaaattgtggtac
agaaatacagaatattaattgggaaagtgggcataaaataggacaaccca
actcccttagcatttaaaaatcaataacatgtgatgttaaaatgagcaaa
ttgcacaatggcctgcaccattggatgctacaagagccagatttgggaaa
tgaccaattagttacctctgaagctgcctatcttaagaaaaagttaagaa
tgcgtctggaatattttcccacgggcccatttggttgttgctttatttta
cattttattttgaaaaatacaaattaccttataatttcaagggaagcttt
gtcggaaaatgtcgaatgcaattcacagaataaaatttggcgaacctgcc
aagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_46259566_46260716
seq2: B6Ng01-312E01.b_45_1184

seq1  GAATTCTTTTATCAGTATCCAAAAAGCAATGAATTGTGATGTTTTCTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTATCAGTATCCAAAAAGCAATGAATTGTGATGTTTTCTTTA  50

seq1  CAGTACAGCAAAATCCAAGGCCCTTCCTTACTCTTTACATTATAAGCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACAGCAAAATCCAAGGCCCTTCCTTACTCTTTACATTATAAGCAAT  100

seq1  GAAGACAGAATCCTGACAAAGACAGAGCTTTTAGAAAATATGGACTGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACAGAATCCTGACAAAGACAGAGCTTTTAGAAAATATGGACTGAAG  150

seq1  ATAATCAAGAAGAGAATTACAAAATGAAAACAAGGAGAATTTAGATTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCAAGAAGAGAATTACAAAATGAAAACAAGGAGAATTTAGATTTGA  200

seq1  CAGTAAAATATTTGACCAAATAGAATAAACAATAAAAAAGCAGGTAGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAAATATTTGACCAAATAGAATAAACAATAAAAAAGCAGGTAGTCT  250

seq1  TTTTTCTCAAAGGTAAACTCGATCATAAAGTGCTATTCAAACATGTTAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTCAAAGGTAAACTCGATCATAAAGTGCTATTCAAACATGTTAGT  300

seq1  ATCAGCTTATAGAAAGGTTTTATAGCTGAATAAATTCATATGCTCAACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCTTATAGAAAGGTTTTATAGCTGAATAAATTCATATGCTCAACTC  350

seq1  AGAGTTTCTCTGATTCTTTGATAGGAGTGAGGGTACAGAGAAAAGTGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTCTCTGATTCTTTGATAGGAGTGAGGGTACAGAGAAAAGTGAAG  400

seq1  GTTATAGAAAGCTAAGGTAAATGAAACAATGGTTTATTAGTAGACCTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAGAAAGCTAAGGTAAATGAAACAATGGTTTATTAGTAGACCTTGA  450

seq1  GTAAATTTAATATATTAATCTGTTAACTCTATGCCTGAATTGACTAGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATTTAATATATTAATCTGTTAACTCTATGCCTGAATTGACTAGTCC  500

seq1  TTGAAGAACTAAATTTATGTTATGAAATTAAATATTAACTACTTAGATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGAACTAAATTTATGTTATGAAATTAAATATTAACTACTTAGATGT  550

seq1  TCATATACAAAACCATATTAAAATTAACCTTCAGTGAAATTTGTCCTCGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATACAAAACCATATTAAAATTAACCTTCAGTGAAATTTGTCCTCGG  600

seq1  GTCATAAATGGCTGCATCTTACAAAATATCTTAGGCTCTCAGAGAACACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAAATGGCTGCATCTTACAAAATATCTTAGGCTCTCAGAGAACACC  650

seq1  CTTATTAAATATCACTCACTTAAGACATTGAAAACATTGTCTTACCCACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTAAATATCACTCACTTAAGACATTGAAAACATTGTCTTACCCACT  700

seq1  TCCAGGAGAAAGTATTACTGTCTTTTTTATTGTCTACTGGGACCAGATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGAGAAAGTATTACTGTCTTTTTTATTGTCTACTGGGACCAGATAA  750

seq1  TAGCTGTGTTAGCTAGAACATTATACTTTGTTGCTGACCTTTTGACCCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGTGTTAGCTAGAACATTATACTTTGTTGCTGACCTTTTGACCCAG  800

seq1  GTAGTTTGTAGTTTGATGAACTAAATCTCTTATCACAAGCACATTCAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTTGTAGTTTGATGAACTAAATCTCTTATCACAAGCACATTCAAAG  850

seq1  AGAACCTGATATTCAAGATATCCAATGACATTTTATACCCCATCCTATCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCTGATATTCAAGATATCCAATGACATTTTATACCCCATCCTATCT  900

seq1  GAAGAGTTCCAGTATTGTTTAGATTTGACATGTTCTCAGAA-TTCCTTCC  949
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GAAGAGTTCCAGTATTGTTTAGATTTGACATGTTCTCAGAATTTCCTTCC  950

seq1  TCAGTTATTCCTGGCCACAAATATAGAAGGAATTTTACACCTTAAATGTG  999
      |||||||||||||| ||||||||||||| |||||||||||||||||||| 
seq2  TCAGTTATTCCTGG-CACAAATATAGAA-GAATTTTACACCTTAAATGT-  997

seq1  GCTGTTGTCAGTCTATGAAAATCTCCTTTGGCTACATCAAGGATAATGGT  1049
      |||| |||||||||||| |||||||   | |||||||||  ||| |||||
seq2  GCTG-TGTCAGTCTATG-AAATCTC---TTGCTACATCA--GAT-ATGGT  1039

seq1  CAGATTTAAACATTAGAGACT-ATATAGACTAATGTTTCTT-GCAGAATA  1097
      ||||||| |||| |||||||| ||||||||| ||||||||| ||||||||
seq2  CAGATTT-AACA-TAGAGACTAATATAGACT-ATGTTTCTTGGCAGAATA  1086

seq1  TCTATGGCTCTCACAAAACACCCTTATGGTCTCATGT-ACTTGTCA-TGA  1145
      || || ||||||||||||    | ||| ||||||||| |||||||| |||
seq2  TCAAT-GCTCTCACAAAAACATCGTAT-GTCTCATGTAACTTGTCATTGA  1134

seq1  ACCTGC  1151
      ||||||
seq2  ACCTGC  1140


seq1: chr3_46355277_46356346
seq2: B6Ng01-312E01.g_64_1167 (reverse)

seq1  GCTTGGCA-GTTC-ACAAATTT--TTCTGTAAATTGCAT--CACATTTTC  44
      |||||||| ||||  |||||||  |||||| ||||||||   ||||||||
seq2  GCTTGGCAGGTTCGCCAAATTTTATTCTGTGAATTGCATTCGACATTTTC  50

seq1  C-ACAAAGCTTCCAT--GAATTATAA-GTTATTTGTAATTTTCAAACT-A  89
      | ||||||||||| |   |||||||| || ||||||| |||||||| | |
seq2  CGACAAAGCTTCCCTTGAAATTATAAGGTAATTTGTATTTTTCAAAATAA  100

seq1  AATGT-AAATAAATGCACAACCAAAT-TGCCCGTGGGAAA--ATTTCAGA  135
      ||||| |||||||   ||||||||||  ||||||||||||  ||| ||||
seq2  AATGTAAAATAAAGCAACAACCAAATGGGCCCGTGGGAAAATATTCCAGA  150

seq1  CGCATTCTTAACTTTT--CTAAG-TAAGCAGC-TCAGA-GTTACTAATTG  180
      ||||||||||||||||   |||| || ||||| ||||| || ||||||||
seq2  CGCATTCTTAACTTTTTCTTAAGATAGGCAGCTTCAGAGGTAACTAATTG  200

seq1  GTCATTTCCAAACTCT-GCTCTTGTAGC-TCCAGTGCTGCAGGCCATTGT  228
      ||||||||| || ||| ||||||||||| |||| || |||||||||||||
seq2  GTCATTTCCCAAATCTGGCTCTTGTAGCATCCAATGGTGCAGGCCATTGT  250

seq1  GCAATTTGCTCATTTTAACATCACATGTT-TTGATTTTT-AATGCT-AGG  275
      ||||||||||||||||||||||||||||| ||||||||| |||||| |||
seq2  GCAATTTGCTCATTTTAACATCACATGTTATTGATTTTTAAATGCTAAGG  300

seq1  GAG-TGGGTTGTCCTA-TTTATG-CCACTTT-CCAATTAATATTCTGTA-  320
      ||| |||||||||||| |||||| ||||||| ||||||||||||||||| 
seq2  GAGTTGGGTTGTCCTATTTTATGCCCACTTTCCCAATTAATATTCTGTAT  350

seq1  TTCTGTACCACAA-TTAAAAT-ACATCCCCATTCAT-AATGCATACTAAC  367
      ||||||||||||| ||||||| |||||||||||||| |||||||||||||
seq2  TTCTGTACCACAATTTAAAATAACATCCCCATTCATAAATGCATACTAAC  400

seq1  TTAGGTTCATTTATTTTTTGGGGGGGGGTG-AAATCAGAATCTCATATTT  416
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTAGGTTCATTTATTTTTTGGGGGGGGGTGAAAATCAGAATCTCATATTT  450

seq1  ACTGTCCTAATTCATAGCATTACCCATTTCTTCAAATCACGGAACATCCT  466
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCCTAATTCATAGCATTACCCATTTCTTCAAATCACGGAACATCCT  500

seq1  GGTAAGTACATACAGTGTGCATCATCACATCATGAGATTCACATGCAAGA  516
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGTACATACAGTGTGCATCATCACATCATGAGATTCACATGCAAGA  550

seq1  CTATTAACAGTGATTGACAAGTTTCAGTAAGCAGGTGCTTGTCAGACACT  566
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAACAGTGATTGACAAGTTTCAGTAAGCAGGTGCTTGTCAGACACT  600

seq1  GGAGAATGAAGGGAAAAAGACAGCGAGTACAGTGTTGCAAGATGTCACTC  616
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAATGAAGGGAAAAAGACAGCGAGTACAGTGTTGCAAGATGTCACTC  650

seq1  TATAGGTAGAAGTAAGAAATTATGATAATTCACTCTACATTTCATAATGT  666
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGTAGAAGTAAGAAATTATGATAATTCACTCTACATTTCATAATGT  700

seq1  AGAACAAGAAAATGATTTTATATTTGTTTCTACACTTCTTTGTAGGTGTC  716
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAAGAAAATGATTTTATATTTGTTTCTACACTTCTTTGTAGGTGTC  750

seq1  TATCTTGATCTCTCTTTCTCTCTCTGACACATACAAAGATACACACACAC  766
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTGATCTCTCTTTCTCTCTCTGACACATACAAAGATACACACACAC  800

seq1  ACACACACACACACATACACGTATGCCCACATGCATGCATCATGCTTCTG  816
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACATACACGTATGCCCACATGCATGCATCATGCTTCTG  850

seq1  TGTTGACCTGCACTGAGTCTGAGTCTGCCCACCTGCCTCAAGGCCAGTTC  866
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGACCTGCACTGAGTCTGAGTCTGCCCACCTGCCTCAAGGCCAGTTC  900

seq1  ATTGAATGTTTTGGCAAAGCAGGGAGCACTTGAAAGACAACATATCTTCT  916
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAATGTTTTGGCAAAGCAGGGAGCACTTGAAAGACAACATATCTTCT  950

seq1  TCTCTGAAAGCAACTTAGGGTTTATTCCATAACACTACTCCCCCATGCCC  966
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAAAGCAACTTAGGGTTTATTCCATAACACTACTCCCCCATGCCC  1000

seq1  TTTATCACAAGGCTGGTTTTTGAAGCTTCACTAATTCGCCAAGATTACAC  1016
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCACAAGGCTGGTTTTTGAAGCTTCACTAATTCGCCAAGATTACAC  1050

seq1  AGAATCTCTCTGTCTTTAGATATGATAGAGAAAGGTAGAGAAGCAGAAGA  1066
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCTCTCTGTCTTTAGATATGATAGAGAAAGGTAGAGAAGCAGAAGA  1100

seq1  ATTC  1070
      ||||
seq2  ATTC  1104


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