BAC Information

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BAC

Clone NameB6Ng01-312G06
Chromosome3 (Build37)
Map Location 94,580,264 - 94,763,159
singlet/doubletdoublet
Overlap geneCgn, Pogz, Psmb4, Selenbp1, Rfx5
Upstream geneTdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801
Downstream genePik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-312G06.bB6Ng01-312G06.g
ACCGA103872GA103873
length1,1201,135
definitionB6Ng01-312G06.b B6Ng01-312G06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,580,264 - 94,581,379)(94,762,014 - 94,763,159)
sequence
gaattcaaggctagcctggacggcacactaataattccaggccaattggg
cagtttaggctacagagttgatatcttgtcaatcaatcaatcaatcaatg
taccaaacctccttaagtcccctaaatgtcctagtaataacaaccaggag
tcaaaattacgcaattaagctgattatccctgattatctgcatcagacat
tgagaagtgattcttttaagatgttccattttgaggcaatctgttttgca
acaaatggataaagagtatattattatctttacttactgttaagaaaaca
ggatttgaatacttgaagaactcaactaagattagttagacagccagcaa
ctactagaatcaaggtttgaacccattaagttgattccacttaaccatta
acctgtactgttttctccttaactagaggactgcaaaccagcacaagctg
aactccaactgtgtacagggcaacaccgagcagtggaagaagcatctata
aagggcgtggggctgggggtgtggcttgatggtggggtgcttgcctagcg
tagacaaagccctgggttccatccccagcactgcataaactgggcattgt
catagacatctgtaatccaaaatttaggaggtaaagaaaggggattagaa
gttcaatgtcattcttggccaacagtgagttcagggccagcccttctgaa
gccttcccaactccaaaacaaaggaaaaataaaaaggtctaggttttagg
ggaagaatggccgcatcttttcattccatctctgccacttactgtcacag
caattctctcacgctctcctccgaccttcagacttctcatcagagaaagt
cctagtgcactctgcacaaccactgacaagattatgtattacccaggaca
gtatctgccaaaaaactacactcaacaaatttctactattattgttgcca
tcataattatgatgagaaaaagacttgagacacatagaatataagtaatt
tttttttttgaagacatgggtttcatgaactctggtttgcttcagcctga
taaatccctagcggtgacctttgattcctgaatctccatgtcctctactt
cctgggtggcctggcttaca
gaattctgcccttgataacactcacttttgaagtgacaggaggaatttta
tcttctgcttctttggcttcctgggaactcaagctcctttctcctttgga
aacagcaccatcttgctgaccttgcacaagcactgtttcccgctcagcct
caccccctggccctggtccttctggtctcccaatgaagttgttttctctt
tttgagccccatgtctcccagagtagccttggggatcggggagagttcac
aatagctgcagacttctcaggagtagcgtttctttccccactccctcctg
gcttctttcgagggcgtcctcgcttcctttttgcttcacttactgtagta
tcctgtgtttcgtgcttcatttctttaactggtgggtcctgcccactggc
ctcactcagaggcacttcagctgtccttttgatacccttgtcatgaggtc
ttggatcactacttatgcctacctccctgttctctgcacctcgaggcaga
atgggtgctctaggtggaactcgcccaggcccaagccctaggccagcccc
aagcccagctccaagcccgggccctggtccagctccaagcccaggcccta
acccaggccccagaccagcccccagaccaggccccggcccaggcccaagc
ccaggccctggcccaaacctaggcccaaggccaggcccaggcccaggccc
agcccctgacaaagtaggaacaggtggtaagatcatgttgatgatgggca
cagctgtctggggccctccaaccctagtgggtagaggcagcgtagctact
ttcagagtgcctgaaatgggtgtgataagtgatcgtggtgctcttggaag
cagcacaggcagtcgggccacaagagcattaacttgtggcttactggctg
ctggaaccgagctgtcaattacactcttcttccgttctgcacgccctgga
aggtctgtcccagctcgggcttcttgctctttaggaggctaaatgcaaac
agagccacagtaggtataaggctataattcagaggctggagaatgctcaa
ggttaggagatttgttgttcctgcagaggatccagtacccacatggcagc
ttgcctacaatatgactctagtttccaggatctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_94580264_94581379
seq2: B6Ng01-312G06.b_47_1166

seq1  GAATTCAAGGCTAGCCTGGACGGCACACTAATAATTCCAGGCCAATTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCTAGCCTGGACGGCACACTAATAATTCCAGGCCAATTGGG  50

seq1  CAGTTTAGGCTACAGAGTTGATATCTTGTCAATCAATCAATCAATCAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTAGGCTACAGAGTTGATATCTTGTCAATCAATCAATCAATCAATG  100

seq1  TACCAAACCTCCTTAAGTCCCCTAAATGTCCTAGTAATAACAACCAGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAACCTCCTTAAGTCCCCTAAATGTCCTAGTAATAACAACCAGGAG  150

seq1  TCAAAATTACGCAATTAAGCTGATTATCCCTGATTATCTGCATCAGACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATTACGCAATTAAGCTGATTATCCCTGATTATCTGCATCAGACAT  200

seq1  TGAGAAGTGATTCTTTTAAGATGTTCCATTTTGAGGCAATCTGTTTTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGTGATTCTTTTAAGATGTTCCATTTTGAGGCAATCTGTTTTGCA  250

seq1  ACAAATGGATAAAGAGTATATTATTATCTTTACTTACTGTTAAGAAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGGATAAAGAGTATATTATTATCTTTACTTACTGTTAAGAAAACA  300

seq1  GGATTTGAATACTTGAAGAACTCAACTAAGATTAGTTAGACAGCCAGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTGAATACTTGAAGAACTCAACTAAGATTAGTTAGACAGCCAGCAA  350

seq1  CTACTAGAATCAAGGTTTGAACCCATTAAGTTGATTCCACTTAACCATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTAGAATCAAGGTTTGAACCCATTAAGTTGATTCCACTTAACCATTA  400

seq1  ACCTGTACTGTTTTCTCCTTAACTAGAGGACTGCAAACCAGCACAAGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTACTGTTTTCTCCTTAACTAGAGGACTGCAAACCAGCACAAGCTG  450

seq1  AACTCCAACTGTGTACAGGGCAACACCGAGCAGTGGAAGAAGCATCTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCAACTGTGTACAGGGCAACACCGAGCAGTGGAAGAAGCATCTATA  500

seq1  AAGGGCGTGGGGCTGGGGGTGTGGCTTGATGGTGGGGTGCTTGCCTAGCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCGTGGGGCTGGGGGTGTGGCTTGATGGTGGGGTGCTTGCCTAGCG  550

seq1  TAGACAAAGCCCTGGGTTCCATCCCCAGCACTGCATAAACTGGGCATTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAAAGCCCTGGGTTCCATCCCCAGCACTGCATAAACTGGGCATTGT  600

seq1  CATAGACATCTGTAATCCAAAATTTAGGAGGTAAAGAAAGGGGATTAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGACATCTGTAATCCAAAATTTAGGAGGTAAAGAAAGGGGATTAGAA  650

seq1  GTTCAATGTCATTCTTGGCCAACAGTGAGTTCAGGGCCAGCCCTTCTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAATGTCATTCTTGGCCAACAGTGAGTTCAGGGCCAGCCCTTCTGAA  700

seq1  GCCTTCCCAACTCCAAAACAAAGGAAAAATAAAAAGGTCTAGGTTTTAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCCCAACTCCAAAACAAAGGAAAAATAAAAAGGTCTAGGTTTTAGG  750

seq1  GGAAGAATGGCCGCATCTTTTCATTCCATCTCTGCCACTTACTGTCACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAATGGCCGCATCTTTTCATTCCATCTCTGCCACTTACTGTCACAG  800

seq1  CAATTCTCTCACGCTCTCCTCCGACCTTCAGACTTCTCATCAGAGAAGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CAATTCTCTCACGCTCTCCTCCGACCTTCAGACTTCTCATCAGAGAAAGT  850

seq1  CCTAGTGCACTCTGCACAACCACTGACAAGATTATGTATTACCCAGGACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTGCACTCTGCACAACCACTGACAAGATTATGTATTACCCAGGACA  900

seq1  GTATCTGCCAAAAAAACTACACTCAACAAA-TTCTACTATTATTGTTGCC  949
      ||||||||| |||||||||||||||||||| |||||||||||||||||||
seq2  GTATCTGCC-AAAAAACTACACTCAACAAATTTCTACTATTATTGTTGCC  949

seq1  ATCATAATTATGATGAGAAAAAGACTTGAGACACATAGAATATAAGTAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAATTATGATGAGAAAAAGACTTGAGACACATAGAATATAAGTAAT  999

seq1  TTTTTTTTT--GAGACAT-GGTTTCATGTAACTCTGTTTGTCTTCAAGCC  1046
      |||||||||   |||||| ||||||||| ||||||| ||  |||| ||||
seq2  TTTTTTTTTTGAAGACATGGGTTTCATG-AACTCTGGTTTGCTTC-AGCC  1047

seq1  TGATAAATCCCTAGCGGTGACCTTGAATTCCTG-ATCTTCCTGT-CTCTA  1094
      ||||||||||||||||||||||||  ||||||| |||| | ||| |||||
seq2  TGATAAATCCCTAGCGGTGACCTTTGATTCCTGAATCTCCATGTCCTCTA  1097

seq1  CTTCCTGGGT-GCTGGGCTTACA  1116
      |||||||||| ||  ||||||||
seq2  CTTCCTGGGTGGCCTGGCTTACA  1120

seq1: chr3_94762014_94763159
seq2: B6Ng01-312G06.g_66_1200 (reverse)

seq1  TTAGATCCCCTGG-AACTAGAGTCATTATTGTAAGCCAGCTGCCATGTGG  49
      ||||||  ||||| ||||||||||| ||||||| || |||||||||||||
seq2  TTAGAT--CCTGGAAACTAGAGTCA-TATTGTAGGCAAGCTGCCATGTGG  47

seq1  GTACTGGGATCCTCTGCAGGAACAACAAATTCTCCTAACCCTTGAGCCAT  99
      ||||| ||||||||||||||||||||||| |||||||| ||||||||   
seq2  GTACT-GGATCCTCTGCAGGAACAACAAA-TCTCCTAA-CCTTGAGC--A  92

seq1  TTCTCCAGCCTCTGAATTTATAGCCTTTATACCTTACTGTGGCTCTGTTT  149
      |||||||||||||||| |||||||| ||||||| ||||||||||||||||
seq2  TTCTCCAGCCTCTGAA-TTATAGCC-TTATACC-TACTGTGGCTCTGTTT  139

seq1  GCATTTTAGCCTCCTAAAGAGCAAGAAGCCCGAGCTGGGACAGACCTTCC  199
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCA-TTTAGCCTCCTAAAGAGCAAGAAGCCCGAGCTGGGACAGACCTTCC  188

seq1  AGGGCGTGCAGAACGGAAGAAGAGTGTAATTGACAGCTCGGTTCCAGCAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCGTGCAGAACGGAAGAAGAGTGTAATTGACAGCTCGGTTCCAGCAG  238

seq1  CCAGTAAGCCACAAGTTAATGCTCTTGTGGCCCGACTGCCTGTGCTGCTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAAGCCACAAGTTAATGCTCTTGTGGCCCGACTGCCTGTGCTGCTT  288

seq1  CCAAGAGCACCACGATCACTTATCACACCCATTTCAGGCACTCTGAAAGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAGCACCACGATCACTTATCACACCCATTTCAGGCACTCTGAAAGT  338

seq1  AGCTACGCTGCCTCTACCCACTAGGGTTGGAGGGCCCCAGACAGCTGTGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACGCTGCCTCTACCCACTAGGGTTGGAGGGCCCCAGACAGCTGTGC  388

seq1  CCATCATCAACATGATCTTACCACCTGTTCCTACTTTGTCAGGGGCTGGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCATCAACATGATCTTACCACCTGTTCCTACTTTGTCAGGGGCTGGG  438

seq1  CCTGGGCCTGGGCCTGGCCTTGGGCCTAGGTTTGGGCCAGGGCCTGGGCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGCCTGGGCCTGGCCTTGGGCCTAGGTTTGGGCCAGGGCCTGGGCT  488

seq1  TGGGCCTGGGCCGGGGCCTGGTCTGGGGGCTGGTCTGGGGCCTGGGTTAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCTGGGCCGGGGCCTGGTCTGGGGGCTGGTCTGGGGCCTGGGTTAG  538

seq1  GGCCTGGGCTTGGAGCTGGACCAGGGCCCGGGCTTGGAGCTGGGCTTGGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGGGCTTGGAGCTGGACCAGGGCCCGGGCTTGGAGCTGGGCTTGGG  588

seq1  GCTGGCCTAGGGCTTGGGCCTGGGCGAGTTCCACCTAGAGCACCCATTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCTAGGGCTTGGGCCTGGGCGAGTTCCACCTAGAGCACCCATTCT  638

seq1  GCCTCGAGGTGCAGAGAACAGGGAGGTAGGCATAAGTAGTGATCCAAGAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCGAGGTGCAGAGAACAGGGAGGTAGGCATAAGTAGTGATCCAAGAC  688

seq1  CTCATGACAAGGGTATCAAAAGGACAGCTGAAGTGCCTCTGAGTGAGGCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGACAAGGGTATCAAAAGGACAGCTGAAGTGCCTCTGAGTGAGGCC  738

seq1  AGTGGGCAGGACCCACCAGTTAAAGAAATGAAGCACGAAACACAGGATAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGCAGGACCCACCAGTTAAAGAAATGAAGCACGAAACACAGGATAC  788

seq1  TACAGTAAGTGAAGCAAAAAGGAAGCGAGGACGCCCTCGAAAGAAGCCAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTAAGTGAAGCAAAAAGGAAGCGAGGACGCCCTCGAAAGAAGCCAG  838

seq1  GAGGGAGTGGGGAAAGAAACGCTACTCCTGAGAAGTCTGCAGCTATTGTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGTGGGGAAAGAAACGCTACTCCTGAGAAGTCTGCAGCTATTGTG  888

seq1  AACTCTCCCCGATCCCCAAGGCTACTCTGGGAGACATGGGGCTCAAAAAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTCCCCGATCCCCAAGGCTACTCTGGGAGACATGGGGCTCAAAAAG  938

seq1  AGAAAACAACTTCATTGGGAGACCAGAAGGACCAGGGCCAGGGGGTGAGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACAACTTCATTGGGAGACCAGAAGGACCAGGGCCAGGGGGTGAGG  988

seq1  CTGAGCGGGAAACAGTGCTTGTGCAAGGTCAGCAAGATGGTGCTGTTTCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCGGGAAACAGTGCTTGTGCAAGGTCAGCAAGATGGTGCTGTTTCC  1038

seq1  AAAGGAGAAAGGAGCTTGAGTTCCCAGGAAGCCAAAGAAGCAGAAGATAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGAAAGGAGCTTGAGTTCCCAGGAAGCCAAAGAAGCAGAAGATAA  1088

seq1  AATTCCTCCTGTCACTTCAAAAGTGAGTGTTATCAAGGGCAGAATTC  1146
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTCCTGTCACTTCAAAAGTGAGTGTTATCAAGGGCAGAATTC  1135