BAC Information

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BAC

Clone NameB6Ng01-312H20
Chromosome3 (Build37)
Map Location 39,459,058 - 39,460,031
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040824, Fat4, LOC100041432, LOC100040853
Downstream geneLOC100041443, LOC100041458, LOC100040882, Intu
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-312H20.bB6Ng01-312H20.g
ACCGA103945GA103946
length1,179979
definitionB6Ng01-312H20.b B6Ng01-312H20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccaacacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcacgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctatttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttgggt
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctatcttgtgaaatagtttgtgcagaactgg
aattagatcttctttgaaggtctgacagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatccagattcaactt
tggtacctggtatctttccagaaatttgttaattttggccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttgtgtctcccttttcatttctgattttgttgat
taggattttgtccctttgccctttagtgagtctagctaagggtttaccta
tcttgttgattttctcaaagaaccaactcctcgtttggttatatctttga
atagttcttcttgtttccacttggttaatttcacccctgagtttgattat
ttcctgccgtctattcctcttgggtgaatttgcttcctttttttctagag
cttttagatgtgttgtcaagctgctagtatgtgctctctcccgttctttt
tggaggtactcagagctaatgagtttcctcttagaaatgctttcattgtg
ttccaaaggtttgggtacgtgtggctcgtttcatttaactctaaaagtct
tttaatttctttcttattcctttctgacaagtatcatgagagagtgtggt
cagttcccacgtggaatgtggctcatactaatgatgctaatgagaattag
tctaaggccagtggggccgtgattaatga

gaattccaggtcagatggaatgtctgaaaaatggattccatctgttttcc
tggctggataagggagaaaggctgtcactgtgcacagacctgtgaatcag
acctaaacaaaccccacagttgaggaaataaacactgtttggagagaaat
agaagtcctagggcaaatgataacaagtggggtgagctctcaccaggaag
tggggggcaagaaaggagaacctgacagaaatcagtttacttggtgtatt
tcaaagtgagtgtgtgaggtcgtggaccacagactctttggttctctagt
cttccctcaccagcagagcatgctgagtgagccatcatgagccatctcct
gtagacactaggggagagggtttcaaatgaggccctggttgagcctaggc
tgcttattccattccctgtccattctaagtctagtcttagtcattgtaaa
ataggctaagttttgcctttattggggaacattgttattgactcctatta
catatggtgatggattctcatccacacaaaaccaatattatcaacagacc
attcacttataacattcttgaacatatcagtcttaaaactcataggttaa
agcccacttgtagggtgacacagtaagaggcatggtttttttggagatca
tgagcataagccccatgaaggtgattaatgacgatagaaaagagattcag
tatataaggacacacctgaaaattaggacaaatacgggctgcttctgcaa
aacaagaaactgctcctcatatgacattgtgctgaaggtggcttgatgtt
gtatttctggacatgatgaagataaacttctatccattgaaagatgtgta
tgtatgtctctgagtatatttgtgtgtgtgtgcatgtatgtgtgtttgtg
tgtgtgtttgtgtgtgtgcgcttaaaagaaagcctgtactattcaaacaa
tgggtgattattagaatttattttaatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_39459058_39460031
seq2: B6Ng01-312H20.g_65_1043 (reverse)

seq1  TCATTGAAAT-AATTCTAATAATCA-CCATTATTAG-ATAGTACA-GATT  46
      ||||| |||| |||||||||||||| ||||| || | |||||||| | ||
seq2  TCATTAAAATAAATTCTAATAATCACCCATTGTTTGAATAGTACAGGCTT  50

seq1  TC-TATAAGCACACACACACAAACACACACACAAACACACATACATGCAC  95
      || | ||||| |||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTAAGCGCACACACACAAACACACACACAAACACACATACATGCAC  100

seq1  ACACACACAAATATACTCAGAGACATACATACACATCTTTCAATGGATAG  145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACAAATATACTCAGAGACATACATACACATCTTTCAATGGATAG  150

seq1  AAGTTTATCTTCATCATGTCCAGAAATACAACATCAAGCCACCTTCAGCA  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTATCTTCATCATGTCCAGAAATACAACATCAAGCCACCTTCAGCA  200

seq1  CAATGTCATATGAGGAGCAGTTTCTTGTTTTGCAGAAGCAGCCCGTATTT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTCATATGAGGAGCAGTTTCTTGTTTTGCAGAAGCAGCCCGTATTT  250

seq1  GTCCTAATTTTCAGGTGTGTCCTTATATACTGAATCTCTTTTCTATCGTC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTAATTTTCAGGTGTGTCCTTATATACTGAATCTCTTTTCTATCGTC  300

seq1  ATTAATCACCTTCATGGGGCTTATGCTCATGATCTCCAAAAAAACCATGC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATCACCTTCATGGGGCTTATGCTCATGATCTCCAAAAAAACCATGC  350

seq1  CTCTTACTGTGTCACCCTACAAGTGGGCTTTAACCTATGAGTTTTAAGAC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTACTGTGTCACCCTACAAGTGGGCTTTAACCTATGAGTTTTAAGAC  400

seq1  TGATATGTTCAAGAATGTTATAAGTGAATGGTCTGTTGATAATATTGGTT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATGTTCAAGAATGTTATAAGTGAATGGTCTGTTGATAATATTGGTT  450

seq1  TTGTGTGGATGAGAATCCATCACCATATGTAATAGGAGTCAATAACAATG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGGATGAGAATCCATCACCATATGTAATAGGAGTCAATAACAATG  500

seq1  TTCCCCAATAAAGGCAAAACTTAGCCTATTTTACAATGACTAAGACTAGA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCAATAAAGGCAAAACTTAGCCTATTTTACAATGACTAAGACTAGA  550

seq1  CTTAGAATGGACAGGGAATGGAATAAGCAGCCTAGGCTCAACCAGGGCCT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAATGGACAGGGAATGGAATAAGCAGCCTAGGCTCAACCAGGGCCT  600

seq1  CATTTGAAACCCTCTCCCCTAGTGTCTACAGGAGATGGCTCATGATGGCT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGAAACCCTCTCCCCTAGTGTCTACAGGAGATGGCTCATGATGGCT  650

seq1  CACTCAGCATGCTCTGCTGGTGAGGGAAGACTAGAGAACCAAAGAGTCTG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGCATGCTCTGCTGGTGAGGGAAGACTAGAGAACCAAAGAGTCTG  700

seq1  TGGTCCACGACCTCACACACTCACTTTGAAATACACCAAGTAAACTGATT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCACGACCTCACACACTCACTTTGAAATACACCAAGTAAACTGATT  750

seq1  TCTGTCAGGTTCTCCTTTCTTGCCCCCCACTTCCTGGTGAGAGCTCACCC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCAGGTTCTCCTTTCTTGCCCCCCACTTCCTGGTGAGAGCTCACCC  800

seq1  CACTTGTTATCATTTGCCCTAGGACTTCTATTTCTCTCCAAACAGTGTTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGTTATCATTTGCCCTAGGACTTCTATTTCTCTCCAAACAGTGTTT  850

seq1  ATTTCCTCAACTGTGGGGTTTGTTTAGGTCTGATTCACAGGTCTGTGCAC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTCAACTGTGGGGTTTGTTTAGGTCTGATTCACAGGTCTGTGCAC  900

seq1  AGTGACAGCCTTTCTCCCTTATCCAGCCAGGAAAACAGATGGAATCCATT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACAGCCTTTCTCCCTTATCCAGCCAGGAAAACAGATGGAATCCATT  950

seq1  TTTCAGACATTCCATCTGACCTGGAATTC  974
      |||||||||||||||||||||||||||||
seq2  TTTCAGACATTCCATCTGACCTGGAATTC  979


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