BAC Information

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BAC

Clone NameB6Ng01-312I06
Chromosome3 (Build37)
Map Location 93,882,249 - 93,882,612
singlet/doubletsinglet
Overlap genenone
Upstream geneCrnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761
Downstream geneLOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-312I06.bB6Ng01-312I06.g
ACCGA103965GA103966
length1,204364
definitionB6Ng01-312I06.b B6Ng01-312I06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagtactgcccctggtattacactatcactttgagtaaaagttag
gtcactgcccttcacaggaatctaccatcaccaaggaagaaagaagtttc
tgactgtaggagaaaccagaatagatacttagaattatagctgagttaca
cccatatacaggaatttacaatggtttaggaagtagatcgggctgtggtt
ttagagtattacattatacatgagatggttagctagaacggaactcccta
gttagaaccatgacttgggtgtgaaagcccttgccctagaagagtaaaga
cctcacacctggcttctaagactatagctgagttacacccatacacacgc
atttacaatggcctaaggggaaggtggactatacaatatactaaaatagg
aactatggcaagggcatgaagcccttgaccctggcttctaagattaagtg
aatcttatgtgaagcccttgttgatcccagttgttaacaatgaattctat
cccaggtggttcctgttagaccttctgtgtttgcattcctctgttttatg
taaaaatccagtaacctctttgtaccttgctggtgtgtcacccaacttcc
ttattgtcttctgcataaaaagtctgatgctcaatttgacaaattacatt
cagattctacacacaacctctcctgtgtgcatctgtctgtcaattcatcc
gacgctttgcccacccatgattagagacccgttccacgcagacatagggg
tccagagggtctgcggcactgtgttagtatacctgagctctattctaaac
ataaagtcctagctgtttttgactgtgttgtctttgctagcatctaagat
tctggcattgcaatggttaaagatttagattctaatttctacatttgcct
gtgttgggtagcaggtctgttccttgacagggaaaggttgaatgaaattt
gatatcagagcgtgcaggagtccccttttctgatgctgaatggtatcctt
gcctatccttgtgatcagcattcatactccaatgccagcctctgccacac
ctctgcatatcccagaagctgaaatcttcttctttgggatatttctagaa
aaaaaaaatggctcaagagtgccttggcttaaaatccatcgaatgacctt
ggccttaccagagttaacccaatcttgcaattaaattttccttaaatacc
cgtg
ataaaacactgggaatttagcagagggagaaaagtccgttgggtgtcatc
aaatctagggacttgtgcaatttggtcatctgtagtgcaggggtgagtga
ctcagttgcccacagctatgatgggtgcttatgagggtttcctttgcctg
gaactatgttcctttcatgttagtatttttagtgtgaattgtagtaaata
cattaagtacacgttggtactttcttactcacaagttgttgctgtgtgtt
ttggaaatatccaactcttcaaagttactcttgcccttaaccaaaatggc
cctaaaggttgtctggagcttagaagaaaaagatggccatggcgggggtt
gggggggttagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_93882249_93882612
seq2: B6Ng01-312I06.g_70_433

seq1  ATAAAACACTGGGAATTTAGCAGAGGGAGAAAAGTCCGTTGGGTGTCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACACTGGGAATTTAGCAGAGGGAGAAAAGTCCGTTGGGTGTCATC  50

seq1  AAATCTAGGGACTTGTGCAATTTGGTCATCTGTAGTGCAGGGGTGAGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTAGGGACTTGTGCAATTTGGTCATCTGTAGTGCAGGGGTGAGTGA  100

seq1  CTCAGTTGCCCACAGCTATGATGGGTGCTTATGAGGGTTTCCTTTGCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTTGCCCACAGCTATGATGGGTGCTTATGAGGGTTTCCTTTGCCTG  150

seq1  GAACTATGTTCCTTTCATGTTAGTATTTTTAGTGTGAATTGTAGTAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTATGTTCCTTTCATGTTAGTATTTTTAGTGTGAATTGTAGTAAATA  200

seq1  CATTAAGTACACGTTGGTACTTTCTTACTCACAAGTTGTTGCTGTGTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAGTACACGTTGGTACTTTCTTACTCACAAGTTGTTGCTGTGTGTT  250

seq1  TTGGAAATATCCAACTCTTCAAAGTTACTCTTGCCCTTAACCAAAATGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAATATCCAACTCTTCAAAGTTACTCTTGCCCTTAACCAAAATGGC  300

seq1  CCTAAAGGTTGTCTGGAGCTTAGAAGAAAAAGATGGCCATGGCGGGGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAGGTTGTCTGGAGCTTAGAAGAAAAAGATGGCCATGGCGGGGGTT  350

seq1  GGGGGGGTTAGGGG  364
      ||||||||||||||
seq2  GGGGGGGTTAGGGG  364