BAC Information

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BAC

Clone NameB6Ng01-312L10
Chromosome3 (Build37)
Map Location 155,584,131 - 155,702,428
singlet/doubletdoublet
Overlap genenone
Upstream geneTnni3k, Fpgt, Lrrc44, EG383956, Scp2-ps1, EG668902
Downstream geneLOC624519, LOC100040901, 4930570G19Rik, Negr1, LOC100041152, LOC668853
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-312L10.bB6Ng01-312L10.g
ACCGA104115GA104116
length1,1091,173
definitionB6Ng01-312L10.b B6Ng01-312L10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,584,131 - 155,585,186)(155,701,260 - 155,702,428)
sequence
gaattccttaggtgtctatagggttgggtcttatgggctttcccctttca
gattagcatgtttattggcatctttattctgctaagttttgtcttgtgtc
atttgcaagagactttatggtgtagcttctgatactactacaagacacaa
tctcatatcaaactctctgatctgattgttacaatctttctattcttttc
cattgatgtttgcctagccttagatgccagagtgttttgtagattatcct
ttgagacaggacaccacaatgtgtccttttgattggttgtggttctctaa
aatactgttcaattttttgcaaagagaaatttccttgatgagagttgaaa
aactcctatctgtgggtataagggcaaatatttagaatatagtgagggat
tttgatggtttagtaaagttgtaaatgaatattccactccaagatctttg
ccttcattatcagaaagtagttggctaggattctagtaccaggcatgttt
tccgtctagttaagagggtcttatgttcagttagagagctgttgtctact
cttaatccaatttggccacacacagactatggctaccgtgctttaatttt
ccctgccccccactaccggctgtaggcacaaccattaagacttgttagaa
ttagtgacccaaatttctgttcttctcctgagattggtagtacaataaca
gcagcaacaacctatggatccacaggggaaatgaccacctcatacagttt
ctacctacagacactgtatctttgggaattaatgtcccttgatgaagtat
aagggacatgcagacattgtagcaggaaatctgcaatccatgagacaaca
aagagtagaaactcaggcttgcttgtctatctgacactatatctttaaag
catcttgccttgaatttagctttcggctacagatctgtttatgctggagg
gttctagatataacaagatagcccggtaaaatttggtgttctgatagacg
acagtatattttttcttcatgtgtatcccatgcattttttgaagaaaatg
tttttttctttaaaccaggactagaggttctttttctttcataaacagtt
ggagagcta

gaattccttctgtaaactgcaacttaaatattggcgtggccaaatgtgca
tggctctgggcaaaggcaagaagcacaatatacaacctagaataagttac
atttaagatgttatattcctttatatttatttataaagcattggcagggt
ttttgacagagaaaaaaaatcccaactttttaaaaaaaaatctgaattca
atattttccatacatgcattagaatttggtagataaagagatgttaaaat
tagtggcctaacttactgtgaggagtacaatgaataaaatattagaataa
ttattatgatttagataatacatataaaaattagaagaatattatgtcat
caacattttatataaattaagctaaattttcaattttcattacaaacttt
tatttcagacctttttaattaatgactacaaaatatattattaatttatg
ctgttatacatccattatactcaaataatatatatatatatatatatata
tatatatatataataaacacatatctatgaaaattaacaaatctaatatt
gatattgaaaaatcaaatacctgaaataattgtgtatgctttagccaact
aaatgttcacaatggctttctttttttctgaaaactatgtggaaaaaaga
tataactgcataaatgtttatcacaccttgaagttactttcttcccaaac
cttccttcaaagtgactctctctgcctaagtggccagagtgagatcaggc
tattttacttgctccaaaagctactcctaggtttgatcacctcaaagtgg
tcttaaacttattactaattcatagaaggtttattcttaattatttctct
catttcaatgttttatttttatcaaataaataaataaataaatgtctagc
atagtttttgttaacttaaatgctatctttgtattttaataaaaattatt
taacattgttcaaaaaaaagtttcaaatagtttacaaggaatgtaacatt
gattcttataaaaagttgttaattatcctttaacatatttttattgtcat
ttctcagaaaataatgtatagtatggattatttaagaacaggttataaca
caattctttattacagtttctgattttatttgcatgtcattatacctgga
taagaatgtggtagccacaactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_155584131_155585186
seq2: B6Ng01-312L10.b_98_1155

seq1  ATTAGCATGTTTATTGGCATCTTTATTCTGCTAAGTTTTGTCTTGTGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCATGTTTATTGGCATCTTTATTCTGCTAAGTTTTGTCTTGTGTCA  50

seq1  TTTGCAAGAGACTTTATGGTGTAGCTTCTGATACTACTACAAGACACAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAAGAGACTTTATGGTGTAGCTTCTGATACTACTACAAGACACAAT  100

seq1  CTCATATCAAACTCTCTGATCTGATTGTTACAATCTTTCTATTCTTTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATATCAAACTCTCTGATCTGATTGTTACAATCTTTCTATTCTTTTCC  150

seq1  ATTGATGTTTGCCTAGCCTTAGATGCCAGAGTGTTTTGTAGATTATCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATGTTTGCCTAGCCTTAGATGCCAGAGTGTTTTGTAGATTATCCTT  200

seq1  TGAGACAGGACACCACAATGTGTCCTTTTGATTGGTTGTGGTTCTCTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAGGACACCACAATGTGTCCTTTTGATTGGTTGTGGTTCTCTAAA  250

seq1  ATACTGTTCAATTTTTTGCAAAGAGAAATTTCCTTGATGAGAGTTGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGTTCAATTTTTTGCAAAGAGAAATTTCCTTGATGAGAGTTGAAAA  300

seq1  ACTCCTATCTGTGGGTATAAGGGCAAATATTTAGAATATAGTGAGGGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTATCTGTGGGTATAAGGGCAAATATTTAGAATATAGTGAGGGATT  350

seq1  TTGATGGTTTAGTAAAGTTGTAAATGAATATTCCACTCCAAGATCTTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGGTTTAGTAAAGTTGTAAATGAATATTCCACTCCAAGATCTTTGC  400

seq1  CTTCATTATCAGAAAGTAGTTGGCTAGGATTCTAGTACCAGGCATGTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTATCAGAAAGTAGTTGGCTAGGATTCTAGTACCAGGCATGTTTT  450

seq1  CCGTCTAGTTAAGAGGGTCTTATGTTCAGTTAGAGAGCTGTTGTCTACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCTAGTTAAGAGGGTCTTATGTTCAGTTAGAGAGCTGTTGTCTACTC  500

seq1  TTAATCCAATTTGGCCACACACAGACTATGGCTACCGTGCTTTAATTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCCAATTTGGCCACACACAGACTATGGCTACCGTGCTTTAATTTTC  550

seq1  CCTGCCCCCCACTACCGGCTGTAGGCACAACCATTAAGACTTGTTAGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCCCCCACTACCGGCTGTAGGCACAACCATTAAGACTTGTTAGAAT  600

seq1  TAGTGACCCAAATTTCTGTTCTTCTCCTGAGATTGGTAGTACAATAACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGACCCAAATTTCTGTTCTTCTCCTGAGATTGGTAGTACAATAACAG  650

seq1  CAGCAACAACCTATGGATCCACAGGGGAAATGACCACCTCATACAGTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAACAACCTATGGATCCACAGGGGAAATGACCACCTCATACAGTTTC  700

seq1  TACCTACAGACACTGTATCTTTGGGAATTAATGTCCCTTGATGAAGTATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTACAGACACTGTATCTTTGGGAATTAATGTCCCTTGATGAAGTATA  750

seq1  AGGGACATGCAGACATTGTAGCAGGAAATCTGCAATCCATGAGACAACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACATGCAGACATTGTAGCAGGAAATCTGCAATCCATGAGACAACAA  800

seq1  AGAGTAGAAACTCAGGCTTGCTTGTCTATCTGACACTATATCTTTAAAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAGAAACTCAGGCTTGCTTGTCTATCTGACACTATATCTTTAAAGC  850

seq1  ATCTTGCCTTGAATTTAGCTTTCGGCTACAGATCTGTTTATGCTGGAGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGCCTTGAATTTAGCTTTCGGCTACAGATCTGTTTATGCTGGAGGG  900

seq1  TTCTTAGATATAACAAGATAG-CCGGTAAAATTTGGTGTTCTGATAGACG  949
      ||| ||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTC-TAGATATAACAAGATAGCCCGGTAAAATTTGGTGTTCTGATAGACG  949

seq1  ACAAGTATA-TTTTTCTTCATGTGTATCCCATGCATTTTTTGA--GACAT  996
      || |||||| |||||||||||||||||||||||||||||||||   | ||
seq2  AC-AGTATATTTTTTCTTCATGTGTATCCCATGCATTTTTTGAAGAAAAT  998

seq1  GTTTTATCTTTAAAACCAGGGACTAGAGGT--CTTTTCTTTCATAAACAG  1044
      ||||| |  || |||||| |||||||||||   |||||||||||||||||
seq2  GTTTTTTTCTTTAAACCA-GGACTAGAGGTTCTTTTTCTTTCATAAACAG  1047

seq1  TTTGGAGAGCTA  1056
       |||||||||||
seq2  -TTGGAGAGCTA  1058


seq1: chr3_155701260_155702428
seq2: B6Ng01-312L10.g_69_1241 (reverse)

seq1  AAGTTGTGGCCTCCACCACTCTTCTC--AGTATAATGACATGCAAAATAA  48
      ||||||||||  ||| || |||| ||   |||||||||||||||||  ||
seq2  AAGTTGTGGCTACCA-CATTCTTATCCAGGTATAATGACATGCAAATAAA  49

seq1  ATCAGAAACTGTAATAAAAGATTGTGTTATAA-CTG-TCTTAAATAATCC  96
      ||||||||||||||||||  |||||||||||| ||| |||||||||||||
seq2  ATCAGAAACTGTAATAAAGAATTGTGTTATAACCTGTTCTTAAATAATCC  99

seq1  ATACCTATAACATTA-TTTCTGAGAAATGACA--TAAAATATGTTAAAGG  143
      ||| |||| |||||| ||||||||||||||||   |||||||||||||||
seq2  ATA-CTAT-ACATTATTTTCTGAGAAATGACAATAAAAATATGTTAAAGG  147

seq1  ATAATTAACAACTTTTATAAAGAATCAATGTTACATTCCTTGTAAACTAT  193
      ||||||||||||||||   |||||||||||||||||||||||||||||| 
seq2  ATAATTAACAACTTTTTATAAGAATCAATGTTACATTCCTTGTAAACTA-  196

seq1  TTTGAAAC-TTTTTTTGAACAATGTTAAATAATTTTTATTAAAATACAAA  242
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAACTTTTTTTTGAACAATGTTAAATAATTTTTATTAAAATACAAA  246

seq1  GATAGCATTTAAGTTAACAAAAACTATGCTAGACATTTATTTATTTATTT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCATTTAAGTTAACAAAAACTATGCTAGACATTTATTTATTTATTT  296

seq1  ATTTGATAAAAATAAAACATTGAAATGAGAGAAATAATTAAGAATAAACC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATAAAAATAAAACATTGAAATGAGAGAAATAATTAAGAATAAACC  346

seq1  TTCTATGAATTAGTAATAAGTTTAAGACCACTTTGAGGTGATCAAACCTA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGAATTAGTAATAAGTTTAAGACCACTTTGAGGTGATCAAACCTA  396

seq1  GGAGTAGCTTTTGGAGCAAGTAAAATAGCCTGATCTCACTCTGGCCACTT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTAGCTTTTGGAGCAAGTAAAATAGCCTGATCTCACTCTGGCCACTT  446

seq1  AGGCAGAGAGAGTCACTTTGAAGGAAGGTTTGGGAAGAAAGTAACTTCAA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGAGAGTCACTTTGAAGGAAGGTTTGGGAAGAAAGTAACTTCAA  496

seq1  GGTGTGATAAACATTTATGCAGTTATATCTTTTTTCCACATAGTTTTCAG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGATAAACATTTATGCAGTTATATCTTTTTTCCACATAGTTTTCAG  546

seq1  AAAAAAAGAAAGCCATTGTGAACATTTAGTTGGCTAAAGCATACACAATT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGAAAGCCATTGTGAACATTTAGTTGGCTAAAGCATACACAATT  596

seq1  ATTTCAGGTATTTGATTTTTCAATATCAATATTAGATTTGTTAATTTTCA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGGTATTTGATTTTTCAATATCAATATTAGATTTGTTAATTTTCA  646

seq1  TAGATATGTGTTTATTATATATATATATATATATATATATATATATATAT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATGTGTTTATTATATATATATATATATATATATATATATATATAT  696

seq1  TATTTGAGTATAATGGATGTATAACAGCATAAATTAATAATATATTTTGT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGAGTATAATGGATGTATAACAGCATAAATTAATAATATATTTTGT  746

seq1  AGTCATTAATTAAAAAGGTCTGAAATAAAAGTTTGTAATGAAAATTGAAA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATTAATTAAAAAGGTCTGAAATAAAAGTTTGTAATGAAAATTGAAA  796

seq1  ATTTAGCTTAATTTATATAAAATGTTGATGACATAATATTCTTCTAATTT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGCTTAATTTATATAAAATGTTGATGACATAATATTCTTCTAATTT  846

seq1  TTATATGTATTATCTAAATCATAATAATTATTCTAATATTTTATTCATTG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGTATTATCTAAATCATAATAATTATTCTAATATTTTATTCATTG  896

seq1  TACTCCTCACAGTAAGTTAGGCCACTAATTTTAACATCTCTTTATCTACC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCTCACAGTAAGTTAGGCCACTAATTTTAACATCTCTTTATCTACC  946

seq1  AAATTCTAATGCATGTATGGAAAATATTGAATTCAGATTTTTTTTTAAAA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTAATGCATGTATGGAAAATATTGAATTCAGATTTTTTTTTAAAA  996

seq1  AGTTGGGATTTTTTTTCTCTGTCAAAAACCCTGCCAATGCTTTATAAATA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGGATTTTTTTTCTCTGTCAAAAACCCTGCCAATGCTTTATAAATA  1046

seq1  AATATAAAGGAATATAACATCTTAAATGTAACTTATTCTAGGTTGTATAT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAAGGAATATAACATCTTAAATGTAACTTATTCTAGGTTGTATAT  1096

seq1  TGTGCTTCTTGCCTTTGCCCAGAGCCATGCACATTTGGCCACGCCAATAT  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTCTTGCCTTTGCCCAGAGCCATGCACATTTGGCCACGCCAATAT  1146

seq1  TTAAGTTGCAGTTTACAGAAGGAATTC  1169
      |||||||||||||||||||||||||||
seq2  TTAAGTTGCAGTTTACAGAAGGAATTC  1173


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