BAC Information

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BAC

Clone NameB6Ng01-312M12
Chromosome3 (Build37)
Map Location 145,075,086 - 145,076,138
singlet/doubletsinglet
Overlap geneCol24a1
Upstream geneLOC545572, Hs2st1, Sep15, LOC435761, Sh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448, Clca6, Clca3, Clca5, Odf2l
Downstream gene2410019A14Rik, Cyr61, Ddah1, LOC100040331, Bcl10, 2410004B18Rik, Syde2, Wdr63, Mcoln3, Mcoln2, Edg7, Ssx2ip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-312M12.bB6Ng01-312M12.g
ACCGA104167GA104168
length1,1871,041
definitionB6Ng01-312M12.b B6Ng01-312M12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctatcttcatctgaaggctgctagcagaatactggctttcagg
cagctaggatgagggtcttaaagcccacacccacagtgacacacatactc
caacagggccatacctcctaatagtgccactccttgggccaatcatgtgc
aaaccatcacattcccttccctagccccatccatagctttcttcaaacac
atgagtctaggggggccacatctagccatagcataataaaaacgttcatt
taatccaacttacaaaacctccatagtctatagcagtatcaacaatttta
aaagtccaaagttcaaagtctcttctgagatccattcaatcacttaactg
taatccccaaagtaaaacagaaaatcagttgcatccaaattctgcatctc
catggctgatgtcaaagcagttttcagatctccaactccttttttgtttt
cttttgttttgttttgtttttcgagatggctttctttctttctttctttc
tttctttctttctttctttctttctttctttctttctttctttctttttt
tctttcaaccctggttgtcctggaactcactctgtagaccaggctggcct
cgaactcagagatccccctgcttctgcctcccaagtgctgggattaaagg
catgcaccaccaccgcctggcccaattccttttttttttttttttaaaat
ctttgttgactggaacaaagttctttttcctgggctgattccactctgtt
agcagcagtcctcaggagatatcctatgtctctggaatctcaaaacatct
tgtggcctccaaggcaacttcagtgttacagctttttgtttcagtgtctg
gaatctacacatgatcttctgtgctccttcaaagggcttgggtcacttct
ccagctctgcccttgttcaggttgatccattccactgccactgctgttct
tggtgatcatccaatgctactggcatctccaatatactggggtcttctgt
gcaactggacttcaccatagcctgtcataggtctcttcatggtgccagca
tcaatctttgcataactttcagttcttggctgcgactacactgaggctgc
acattcaccatgactcatgctctcacacggcgagcctagctgccctcatg
atcctcagtgccttcaaatcagttaccacctggagta
gaattcatgactctcttctaggaagtttaatatgcctgctcttcctctca
tctgccaagttggcaacttttccctggccctgttctattctccctacatc
cttctgacgctggtgtgaacagaccaggcatggttttttttttttttttt
tttttgttttgttttacatagttaggtttatatgtgtgtttccatgtggg
agcgtatgcacatgcgtgcaaatgcttaaagaagccagaagagggcgaca
gatcccctggagctggagttgttctttatgagctacctaacatgggttct
gggaacctgactagttatctttaagagcatcaagtgcttctacccactgg
acattaggggccatgtcttcctagccattgctgtgaatagactgataact
tctatggatttttttttattgttgatgatgctcaaagccaggcaggcatg
ttcttagaatggaaaagtggtggtatctttggggaaacatcaacagtggc
tctctagaatcttccagagctctgttaccttaaatacaagatgtgagact
atttttccttaaagtatccttgattgcattaattttcagttattacattt
cttcccacttggtgacattcatgactgtcttatagtctagtcactctaac
ttatttcttaagctggagcttcacttactggattttactttatacatttc
ttaatttactgacatatggagatttatcccctgctctctcccccatgctg
tgctaaatgatgataaatgaccagtgaacacagagagaaacaggaaaggt
cctggattatcctcaaaatgacgtacctcacctttcttaataaaatcttc
agaatcagggatgctgtgatgggtgatccctggatggcttctaagcagtt
actcaaagcccaaaacaggagaaaactaagggagaaatagagacaaattt
ctgcttataaggaccattctctatattaatattctctatatatatattaa
gcgacattctgcaccctgtggctgtgatgtgtagatgtata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_145075086_145076138
seq2: B6Ng01-312M12.g_65_1105

seq1  GAATTCATGACTCTCTTCTAGGAAGTTTAATATGCCTGCTCTTCCTCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGACTCTCTTCTAGGAAGTTTAATATGCCTGCTCTTCCTCTCA  50

seq1  TCTGCCAAGTTGGCAACTTTTCCCTGGCCCTGTTCTATTCTCCCTACATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCAAGTTGGCAACTTTTCCCTGGCCCTGTTCTATTCTCCCTACATC  100

seq1  CTTCTGACGCTGGTGTGAACAGACCAGGCATGGTTTTTTTTTTTTTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGACGCTGGTGTGAACAGACCAGGCATGGTTTTTTTTTTTTTTTTT  150

seq1  TTTTTGTTTTGTTTTACATAGTTAGGTTTATATGTGTGTTTCCATGTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTTGTTTTACATAGTTAGGTTTATATGTGTGTTTCCATGTGGG  200

seq1  AGCGTATGCACATGCGTGCAAATGCTTAAAGAAGCCAGAAGAGGGCGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTATGCACATGCGTGCAAATGCTTAAAGAAGCCAGAAGAGGGCGACA  250

seq1  GATCCCCTGGAGCTGGAGTTGTTCTTTATGAGCTACCTAACATGGGTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCCTGGAGCTGGAGTTGTTCTTTATGAGCTACCTAACATGGGTTCT  300

seq1  GGGAACCTGACTAGTTATCTTTAAGAGCATCAAGTGCTTCTACCCACTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACCTGACTAGTTATCTTTAAGAGCATCAAGTGCTTCTACCCACTGG  350

seq1  ACATTAGGGGCCATGTCTTCCTAGCCATTGCTGTGAATAGACTGATAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAGGGGCCATGTCTTCCTAGCCATTGCTGTGAATAGACTGATAACT  400

seq1  TCTATGGATTTTTTTTTTATTGTTGATGATGCTCAAAGCCAGGCAGGCAT  450
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGGA-TTTTTTTTTATTGTTGATGATGCTCAAAGCCAGGCAGGCAT  449

seq1  GTTCTTAGAATGGAAAAGTGGTGGTATCTTTGGGGAAACATCAACAGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTAGAATGGAAAAGTGGTGGTATCTTTGGGGAAACATCAACAGTGG  499

seq1  CTCTCTAGAATCTTCCAGAGCTCTGTTACCTTAAATACAAGATGTGAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTAGAATCTTCCAGAGCTCTGTTACCTTAAATACAAGATGTGAGAC  549

seq1  TATTTTTCCTTAAAGTATCCTTGATTGCATTAATTTTCAGTTATTACATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTCCTTAAAGTATCCTTGATTGCATTAATTTTCAGTTATTACATT  599

seq1  TCTTCCCACTTGGTGACATTCATGACTGTCTTATAGTCTAGTCACTCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCACTTGGTGACATTCATGACTGTCTTATAGTCTAGTCACTCTAA  649

seq1  CTTATTTCTTAAGCTGGAGCTTCACTTACTGGATTTTACTTTATACATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTCTTAAGCTGGAGCTTCACTTACTGGATTTTACTTTATACATTT  699

seq1  CTTAATTTACTGACATATGGAGATTTATCCCCTGCTCTCTCCCCCATGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATTTACTGACATATGGAGATTTATCCCCTGCTCTCTCCCCCATGCT  749

seq1  GTGCTAAATGATGATAAATGACCAGTGAACACAGAGAGAAACAGG-AAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTGCTAAATGATGATAAATGACCAGTGAACACAGAGAGAAACAGGAAAGG  799

seq1  TCCTGGATTATCCTCAAAATGACGTACCTCACCTTTCTTAATAAAATCTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGATTATCCTCAAAATGACGTACCTCACCTTTCTTAATAAAATCTT  849

seq1  CAGAATCAGGGATGCTGTGATGGGTGATCCCTGGATGGCTTCTAAGCAGG  899
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CAGAATCAGGGATGCTGTGATGGGTGATCCCTGGATGGCTTCTAAGCA-G  898

seq1  TTACTCAAAG-CCAAAACAGGAGAAAAACTAAGGGAGAAATAGAGACAAA  948
      |||||||||| |||||||||||| ||||||||||||||||||||||| ||
seq2  TTACTCAAAGCCCAAAACAGGAG-AAAACTAAGGGAGAAATAGAGAC-AA  946

seq1  ATTTCTGCTTATTAAGGACCCATTCTCTATATTAATATTCTCTATATTAA  998
      ||||||||||| |||||| ||||||||||||||||||||||||||||  |
seq2  ATTTCTGCTTA-TAAGGA-CCATTCTCTATATTAATATTCTCTATATATA  994

seq1  TATTAATAAAGCGACCATTCTGCACCCTGTTGCTGTGGAATGTGTAGAAT  1048
      ||||    |||||| ||||||||||||||| ||||||  |||||||| ||
seq2  TATT----AAGCGA-CATTCTGCACCCTGTGGCTGTG--ATGTGTAG-AT  1036

seq1  GTATA  1053
      |||||
seq2  GTATA  1041