BAC Information

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BAC

Clone NameB6Ng01-313B13
Chromosome3 (Build37)
Map Location 41,116,240 - 41,117,396
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-313B13.bB6Ng01-313B13.g
ACCGA104401GA104402
length1,0681,129
definitionB6Ng01-313B13.b B6Ng01-313B13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcccataccttctcagctttccactagtcattgacacactgacatg
agatgtggaaatcagtgagccagtactggcacagtactgacacctaaagt
ccatatttccttaactattactgtcttttccttcttttgcaaatgttctt
tctccagtccaggatatcacaagttgacttgagctgccatggtctcctta
actcttcttggctatgaccttctctcagaatccccctgcattcaaagatg
ttgacaagttttttcctttctccatttttacatttatttatttatttggg
aggtgagcacagcacagtgtgtgccaggcagtcagaggacagctttcaga
aatcagttctctctcactatgtaggtccaagggattgaactcagggcagc
cgaagcatctaccagttgaaccactttacaagccagacattggtactttg
aggacgccgctccgggggtgggaaagcacagtcttagctgtgggaaggcc
ggagctcgttcagggtccccggggctggttcaggcgtcccagacctgcaa
caaggccatgaggttctcagactcttagacatccaggtgccgctgggaat
cttggaagagcagagaatggagttggggctctggggggaaaggggagatt
cggcttgtcccaatggggatgattgtccttaccttgatagtggcaggctt
cgtggcgattgtggctgggagtgcagagaagccttctacaggagattagg
ctgcagctctgtaggcaaaggccttcatgatcttgatgaaaggctaagcc
ctccaggcctctaggtacctcattagcatggagacctaagagcctgagac
tcttgatttgagcctaagtgaccatagaacatatttcttttatgtgagaa
gcatggcacttgttccaagtcaggcagggagccgggaatcacctaagcct
cagtgtgtgcccaccgagtctctgggtcttgggcctgctctaccttacca
aacttcttggcatggttttatgtcccacaatcatgtatgtatgtatgtat
gtatgtattgtaatgtta
gaattcacacactgggttctgggtgctttgttatcctggtgtgagcacat
attacccgatgaatatttactgcagtgtagccattggtgaattcccaagg
cgtcacttatggtcaaggaagaatgagctgtttaccttggagtcacttcg
ctgcaaatcaggaggaagttgagttatttgtgatttagactttatataag
ctggggagaggagacttctgacctctgagctgatacttgcctgcaggtta
tgcagttcccacttttgtgggttgccatccacgtaagggtgggcatttga
tggtgtttctccttttgagtcatgcatgattctgtatgtaactccattgg
ctcatcgaggtgaatcagcacagtttggcctgttgtcagttccctatctg
ggtgtgtacagctttgttcatgtctcccaggaataatgtcaccagcacag
gactgtatattgtctttcgtgaatggcttgatctgtcttgctccgatgtt
caccactaaggaagagggtgctgtggatttgcttgctgttattccgtatc
gagtggggatctctttaacatctagcatctgaaatccctggtctcccagt
aggtttattgtgccttggaattgtgattacacatagactaacctgcttcc
actccatgtttagtaagtggcacactgtgcaaaacacttcaaatacaaaa
tcccattaatttctcacctgcagaacagcccatagcattatcttttacag
ataaagtaagctttaataaataatctttcccaagggcataacatgagtaa
atggtgagactgaggctcaatttaacgtctttctgactctgaggtctgca
ccggtatgaagaggcgtgtgcaacgctgggaaaaggcccatccaaaagag
aagcctccagttttacctgtagagattattgaatgcaatatgggaagtga
gagacaaaggttgttagcatgcacacatactgcagtacagtgttctaaaa
aaatcatggtagcaaaaatcatgtaacatcacatacttgcacgtctacac
taattctgtctatataaattatttattttatgttgctgtttcaataaatt
ccggaagagtcccctgcactcttctgtcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41116240_41117396
seq2: B6Ng01-313B13.g_67_1195

seq1  GAATTCACACACTGGGTTCTGGGTGCTTTGTTATCCTGGTGTGAGCACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACACTGGGTTCTGGGTGCTTTGTTATCCTGGTGTGAGCACAT  50

seq1  ATTACCCGATGAATATTTACTGCAGTGTAGCCATTGGTGAATTCCCAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCCGATGAATATTTACTGCAGTGTAGCCATTGGTGAATTCCCAAGG  100

seq1  CGTCACTTATGGTCAAGGAAGAATGAGCTGTTTACCTTGGAGTCACTTCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCACTTATGGTCAAGGAAGAATGAGCTGTTTACCTTGGAGTCACTTCG  150

seq1  CTGCAAATCAGGAGGAAGTTGAGTTATTTGTGATTTAGACTTTATATAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAATCAGGAGGAAGTTGAGTTATTTGTGATTTAGACTTTATATAAG  200

seq1  CTGGGGAGAGGAGACTTCTGACCTCTGAGCTGATACTTGCCTGCAGGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGAGAGGAGACTTCTGACCTCTGAGCTGATACTTGCCTGCAGGTTA  250

seq1  TGCAGTTCCCACTTTTGTGGGTTGCCATCCACGTAAGGGTGGGCATTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTTCCCACTTTTGTGGGTTGCCATCCACGTAAGGGTGGGCATTTGA  300

seq1  TGGTGTTTCTCCTTTTGAGTCATGCATGATTCTGTATGTAACTCCATTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTTTCTCCTTTTGAGTCATGCATGATTCTGTATGTAACTCCATTGG  350

seq1  CTCATCGAGGTGAATCAGCACAGTTTGGCCTGTTGTCAGTTCCCTATCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCGAGGTGAATCAGCACAGTTTGGCCTGTTGTCAGTTCCCTATCTG  400

seq1  GGTGTGTACAGCTTTGTTCATGTCTCCCAGGAATAATGTCACCAGCACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGTACAGCTTTGTTCATGTCTCCCAGGAATAATGTCACCAGCACAG  450

seq1  GACTGTATATTGTCTTTCGTGAATGGCTTGATCTGTCTTGCTCCGATGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTATATTGTCTTTCGTGAATGGCTTGATCTGTCTTGCTCCGATGTT  500

seq1  CACCACTAAGGAAGAGGGTGCTGTGGATTTGCTTGCTGTTATTCCGTATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACTAAGGAAGAGGGTGCTGTGGATTTGCTTGCTGTTATTCCGTATC  550

seq1  GAGTGGGGATCTCTTTAACATCTAGCATCTGAAATCCCTGGTCTCCCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGGGATCTCTTTAACATCTAGCATCTGAAATCCCTGGTCTCCCAGT  600

seq1  AGGTTTATTGTGCCTTGGAATTGTGATTACACATAGACTAACCTGCTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTATTGTGCCTTGGAATTGTGATTACACATAGACTAACCTGCTTCC  650

seq1  ACTCCATGTTTAGTAAGTGGCACACTGTGCAAAACACTTCAAATACAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCATGTTTAGTAAGTGGCACACTGTGCAAAACACTTCAAATACAAAA  700

seq1  TCCCATTAATTTCTCACCTGCAGAACAGCCCATAGCATTATCTTTTACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTAATTTCTCACCTGCAGAACAGCCCATAGCATTATCTTTTACAG  750

seq1  ATAAAGTAAGCTTTAATAAATAATCTTTCCCAAGGGCATAACATGAGTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTAAGCTTTAATAAATAATCTTTCCCAAGGGCATAACATGAGTAA  800

seq1  ATGGTGAGACTGAGGCTCAATTTAACGTCTTTTCTGACTCTGAGGTCTGC  850
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATGGTGAGACTGAGGCTCAATTTAACGTC-TTTCTGACTCTGAGGTCTGC  849

seq1  ACCGGTATGAAGAGGCGTGTGCAACGCTGGG-AAAGGCCCATCCAAAAGA  899
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ACCGGTATGAAGAGGCGTGTGCAACGCTGGGAAAAGGCCCATCCAAAAGA  899

seq1  GAAGCCTCCAGTTTTACCTGTAGAGATTATTGAATGCAATATGGGAAGGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAAGCCTCCAGTTTTACCTGTAGAGATTATTGAATGCAATATGGGAA-GT  948

seq1  GAGAAGACAAAGGTTGTTAGCATGGCACACATACTGCAGTACAGTGTTAT  999
      ||| ||||||||||||||||||| |||||||||||||||||||||||| |
seq2  GAG-AGACAAAGGTTGTTAGCAT-GCACACATACTGCAGTACAGTGTTCT  996

seq1  AAAAAAAATCATTGGTAAGCAAAAATCATTGGTACATCACAATAC-TGCA  1048
       |||||||||| |||| ||||||||||| ||  ||||||| |||| ||||
seq2  -AAAAAAATCA-TGGT-AGCAAAAATCA-TGTAACATCAC-ATACTTGCA  1041

seq1  CGTCCTTACCAACTAATTTCTGTTCTATTATTTAAATTTATTTTATTTTA  1098
      ||||  |||  ||||| ||||||     ||| ||||||   |||||||||
seq2  CGTC--TAC--ACTAA-TTCTGT----CTATATAAATT--ATTTATTTTA  1080

seq1  TTGTTTGCTGTTTTCAATAAATTCTGATAGAAGTTTCCCCCCTGCACTCC  1148
      |   |||||| ||||||||||||| |   ||||  |  ||||||||||| 
seq2  T--GTTGCTG-TTTCAATAAATTCCG---GAAGAGT--CCCCTGCACTCT  1122

seq1  TCCCTGTCC  1157
      |  ||||||
seq2  T--CTGTCC  1129