BAC Information

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BAC

Clone NameB6Ng01-313D05
Chromosome3 (Build37)2 (Build37)
Map Location 27,262,490 - 27,262,776153,820,207 - 153,821,375
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC229152, Spata16, LOC665258, Ect2, Aadacl1, LOC100040527, Tnfsf10
Downstream geneGhsr, Fndc3b, E030011K20Rik, Pld1, Tnik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-313D05.bB6Ng01-313D05.g
ACCGA104481GA104482
length9781,157
definitionB6Ng01-313D05.b B6Ng01-313D05.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(27,262,490 - 27,262,776)(153,820,207 - 153,821,375)
sequence
gaattctctgtttagttatgtaccccatttttggaatggattattttgtt
ttttggagtctaacttcttgagttttttatatattttggatactagccat
ttgtatgatgaagggtcagtgaggatcttttcccaatccgtaggctgttg
ttttgtcctattgccttacagaagcttttcagtttcatgaggtactattt
attaattcttgaaattcatgcctgagtcactggtgttctgttcaggaaat
tgtctcctgtgcattcaagactgtttcccactttctcttctattagattt
agtgtgtatagtttttattggttttacattgaggtttttgatccatttgg
gcttgagttttgtataggtaaataagtatggacctatttgcattcttcta
caagcagacatccagttagaccagcaccatttgttgaaaatgctttttct
gttccattgtatggttttgacttctttgtcaaaatctagtgtccatagga
gtgttggtttatttctgggtctttgatttgattccattgatcgacttgtc
catttctattccaacactgtgcagttatttccactattgctctgtagtac
agcttaggtcagggatggtgatacctctaagttctttcactgttcaggat
cattttggctagcctgcattttttgttttcccatatgtagttgagaattg
ttcttttaagatctgtgaagaattgtgttagaattttgatgggattgcat
tgaatctgtagattgctgttggtaagatgcccattttcaccatatcaatc
ctaccaatgagcaagggaggtctttccaccttttgatatcttcctcagtt
tctttagagacttgaagttattgttatacacatctttcgcttgattggtt
agagctgtaccaaggtattttatgttatttatagctacttgtgaagggtg
ttgttcccaatcttccctttcagccatt

gaattctctgaccttggttgcctctggccttaaccttatctccagtgatt
gcttatagccaccccctaccagccccttctctagagcttgggctttcact
cacagaaactgaccaggagaaagcatccacagatctgtgtgttagcatgg
aactacttcaagtaggcccacctgtaagaaccaaccaaaggcatgtgctt
gagaagcgaagggacaggacagtgaatggccttccatttcagacagtaga
cagaacttacagtcctgacaacccttggggtcatctgaagctgatgctgg
atccatcaagacaaatggcagtcaagtaaggtgtgtcagctaagaggtag
gccccatagtttaaacaggagccagaggagatgctacacgaagcccttaa
ccctgaaaattagctgtgcctcagcacctgacactcctatctttttgtga
gaagcacactcaaaagatgtttgctctgtttaaagcttcactgtggggtc
tccctagggggagggagaaggcccagatagcacatgtctaaatgtaactc
aagttaggtagtggtggcacatgcctttaatcccagcacttgggaggcag
aggcaggtagatttttgagttcaaggctagcctggtctattcaggacggc
cagagttatacagaaaaactctgtctcagaaacacacacacacacacata
catacatacatacatacatacatacatacatacatacatgtaactcaagg
ctctaacttcccaagagtccgtcatgatgggaagtcacagcagcagtcag
tcacattacatccactgtcaagaagcagggtggtaaacgcatgctggtgg
tcagctagtctcttattgcagcccagattggggtgtcacccatagtaaag
gggtcctctaaccccagcaatcaagaacaacctcctataggcatgactag
agtcttgttttcctggatggtagtaaatcccattgaattacagttaatat
tattgcaacattttgagtccagaagtcaaagtctggcttcagagactaag
agtccaagaactttggtgatagcagcacgagcaagcatgagcaggcttga
agttcattactgctgaactggaataaggaagtacctgcctactgctgcca
ggaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_27262490_27262776
seq2: B6Ng01-313D05.b_46_447 (reverse)

seq1  TGTAGAAGAATGAAAATAGATCCGTATCTATCACCCTGCAGAAAACTCAA  50
      |||||||||||| |||||| ||| ||  |||   |||  | |||||||||
seq2  TGTAGAAGAATGCAAATAGGTCCATACTTATTTACCTATACAAAACTCAA  50

seq1  GTCCAAGTGGATCAAAGACCTCAACATAAAACCAA----------ATACA  90
      | |||| ||||||||| |||||||  |||||||||          | |||
seq2  GCCCAAATGGATCAAAAACCTCAATGTAAAACCAATAAAAACTATACACA  100

seq1  CTGAATCTGAGAGAAGAG--------------------------------  108
      || ||||| | |||||||                                
seq2  CTAAATCTAATAGAAGAGAAAGTGGGAAACAGTCTTGAATGCACAGGAGA  150

seq1  ----------------------------CAGGCACTAAGATTGACAATTA  130
                                  ||||||  ||  |  | |||||
seq2  CAATTTCCTGAACAGAACACCAGTGACTCAGGCATGAATTTCAAGAATTA  200

seq1  ATAAATGGGACCTCGTGAAACTGAAAAGCTTCTGTATGGCAAAAGACACT  180
      |||||| | ||||| ||||||||||||||||||||| ||           
seq2  ATAAATAGTACCTCATGAAACTGAAAAGCTTCTGTAAGG-----------  239

seq1  GTCAATAGGAC-AAACAGCTGCCTACAGAACAGGGAAAGATCTTTGCCAA  229
        ||||||||| ||||| | |||||| ||   || ||||||| |  |  |
seq2  --CAATAGGACAAAACAACAGCCTACGGATTGGGAAAAGATCCTCACTGA  287

seq1  CC---------ACACAT--CTAG--------------AAACAA-------  247
      ||         ||| ||  ||||              ||| ||       
seq2  CCCTTCATCATACAAATGGCTAGTATCCAAAATATATAAAAAACTCAAGA  337

seq1  ---------CCACACATCAA-------CAATCC--AAATTG-------AA  272
               ||| | | |||       || |||  |||| |       ||
seq2  AGTTAGACTCCAAAAAACAAAATAATCCATTCCAAAAATGGGGTACATAA  387

seq1  CTAAACAGAGAATTC  287
      |||||||||||||||
seq2  CTAAACAGAGAATTC  402


seq1: chr2_153820207_153821375
seq2: B6Ng01-313D05.g_66_1222

seq1  GAATTCTCTGACCTTGGTTGCCTCTGGCCTTAACCTTATCTCCAGTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGACCTTGGTTGCCTCTGGCCTTAACCTTATCTCCAGTGATT  50

seq1  GCTTATAGCCACCCCCTACCAGCCCCTTCTCTAGAGCTTGGGCTTTCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATAGCCACCCCCTACCAGCCCCTTCTCTAGAGCTTGGGCTTTCACT  100

seq1  CACAGAAACTGACCAGGAGAAAGCATCCACAGATCTGTGTGTTAGCATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAACTGACCAGGAGAAAGCATCCACAGATCTGTGTGTTAGCATGG  150

seq1  AACTACTTCAAGTAGGCCCACCTGTAAGAACCAACCAAAGGCATGTGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACTTCAAGTAGGCCCACCTGTAAGAACCAACCAAAGGCATGTGCTT  200

seq1  GAGAAGCGAAGGGACAGGACAGTGAATGGCCTTCCATTTCAGACAGTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCGAAGGGACAGGACAGTGAATGGCCTTCCATTTCAGACAGTAGA  250

seq1  CAGAACTTACAGTCCTGACAACCCTTGGGGTCATCTGAAGCTGATGCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTTACAGTCCTGACAACCCTTGGGGTCATCTGAAGCTGATGCTGG  300

seq1  ATCCATCAAGACAAATGGCAGTCAAGTAAGGTGTGTCAGCTAAGAGGTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCAAGACAAATGGCAGTCAAGTAAGGTGTGTCAGCTAAGAGGTAG  350

seq1  GCCCCATAGTTTAAACAGGAGCCAGAGGAGATGCTACACGAAGCCCTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCATAGTTTAAACAGGAGCCAGAGGAGATGCTACACGAAGCCCTTAA  400

seq1  CCCTGAAAATTAGCTGTGCCTCAGCACCTGACACTCCTATCTTTTTGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAAAATTAGCTGTGCCTCAGCACCTGACACTCCTATCTTTTTGTGA  450

seq1  GAAGCACACTCAAAAGATGTTTGCTCTGTTTAAAGCTTCACTGTGGGGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCACACTCAAAAGATGTTTGCTCTGTTTAAAGCTTCACTGTGGGGTC  500

seq1  TCCCTAGGGGGAGGGAGAAGGCCCAGATAGCACATGTCTAAATGTAACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAGGGGGAGGGAGAAGGCCCAGATAGCACATGTCTAAATGTAACTC  550

seq1  AAGTTAGGTAGTGGTGGCACATGCCTTTAATCCCAGCACTTGGGAGGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAGGTAGTGGTGGCACATGCCTTTAATCCCAGCACTTGGGAGGCAG  600

seq1  AGGCAGGTAGATTTTTGAGTTCAAGGCTAGCCTGGTCTATTCAGGACGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGTAGATTTTTGAGTTCAAGGCTAGCCTGGTCTATTCAGGACGGC  650

seq1  CAGAGTTATACAGAAAAACTCTGTCTCAGAAACACACACACACAC----A  696
      |||||||||||||||||||||||||||||||||||||||||||||    |
seq2  CAGAGTTATACAGAAAAACTCTGTCTCAGAAACACACACACACACACATA  700

seq1  CATACATACATACATACATACATACATACATACATACATGTAACTCAAGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATACATACATACATACATACATACATACATACATGTAACTCAAGG  750

seq1  CTCTAACTTCCCAAGAGTCCGTCATGATGGGAAGTCACAGCAGCAGTCAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAACTTCCCAAGAGTCCGTCATGATGGGAAGTCACAGCAGCAGTCAG  800

seq1  TCACATTACATCCACTGTCAAGAAGCAGGGTGGTAAACGCATGCTGGTGG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTACATCCACTGTCAAGAAGCAGGGTGGTAAACGCATGCTGGTGG  850

seq1  TCAGCTAGTCTCTTATTGCAGCCCAGATTGGGGTGTCACCCATAGTAAGG  896
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCAGCTAGTCTCTTATTGCAGCCCAGATTGGGGTGTCACCCATAGTAAAG  900

seq1  GGGTCCTCTAACCCCAGCAATCAAG-ACAACCTCCTATAGGCATGACTAG  945
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGGTCCTCTAACCCCAGCAATCAAGAACAACCTCCTATAGGCATGACTAG  950

seq1  AGTC-TGTTTTCCTGGATGGTAGTAAATCCCATTGAATTAACAGTTAATA  994
      |||| |||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGTCTTGTTTTCCTGGATGGTAGTAAATCCCATTGAATT-ACAGTTAATA  999

seq1  TTATTGCAACATTTTTGAGTCCCAGGAAGTCAAAGTCCTGGCTTCAGAGA  1044
      ||||||||||| ||||||||||   ||||||||||| |||||||||||||
seq2  TTATTGCAACA-TTTTGAGTCC--AGAAGTCAAAGT-CTGGCTTCAGAGA  1045

seq1  CTAAAGAGTCCCAAGAACTTT-GTGATAAGCAGCCACGAGCAGCCATGAG  1093
      || |||||| ||||||||||| ||||| ||||| ||||||||  ||||||
seq2  CT-AAGAGT-CCAAGAACTTTGGTGAT-AGCAG-CACGAGCAAGCATGAG  1091

seq1  CCAGGCCTGAGGTTCTATTACTGCTGAAACCTGGGAATAAGGAGAGCACC  1143
       ||||| ||| |||| ||||||||||||  || |||||||||| || |||
seq2  -CAGGCTTGAAGTTC-ATTACTGCTGAA--CT-GGAATAAGGA-AGTACC  1135

seq1  TGCCTCACTGGGTGGCCAGGAGAAAA  1169
      ||||| |||  |  ||||||| ||| 
seq2  TGCCT-ACT--GCTGCCAGGAAAAA-  1157


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