BAC Information

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BAC

Clone NameB6Ng01-313J17
Chromosome3 (Build37)
Map Location 24,051,300 - 24,052,508
singlet/doubletsinglet
Overlap geneEG635702
Upstream geneLOC100039548
Downstream geneEG665189
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-313J17.bB6Ng01-313J17.g
ACCGA104774GA104775
length1,1961,135
definitionB6Ng01-313J17.b B6Ng01-313J17.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatttcttccatggccctgctgtatccataaaaccatctctttgt
accatctaccacatatggctcttatgattttctactccctagtctgccat
gattcttgagcccaagaatcaatgtgtggtgcggagaggtatatgacaga
gatgtccctttgggagcaggggacatatatgtgaactccagtcttattct
ttacacattgaccaggtataggactcaatgttaattttcatctactgcaa
aaaaagaaacttctctgatgacagctgtatgagtcacttatctgagggtg
cactgataaactgttggatactactttaatagtatactcattgagcacaa
tattagtagttgttgccactaggaggattattaaatttttcccacaggac
ctataacctatctagccataagtttgtggctcagtaacatggtttgcaat
ggtgctctctattctctgtaattttcgtcccttaggatcacagactggta
ttaaattacttccttccctgatatatccttgtacccaactcagtgactta
tacacacacctctgtaacagtcagttaaggatttagttattaattccaca
atccaaagcactgcacatggaatgaggggtctccaagtccttcacttctg
gcttagatcattttcttcaatatttcaatagaaacctgatatttaaagat
tgtctgagaggctccttgtttaacatgaaaattagccttgagacacctaa
cattgaaccatcttctatagtccaacctatatacctttagtacttttcat
agtctccttaaacaatcattttacagatgcattttgatgggaagtttact
ttgaatgtatgtattagaaaaaagaatagaaaagatcctctattcctatg
gatatacaatgtaaattcctgacaaggcatagaatttctgtcatccctgt
gattgttagaaatatatatttaagtatttactcatttatttatagtgtat
tgagatattcttatcaaagaagtcttgtattctgggaaagctggtgtcat
tagttaatgtgagtagacaaactaagccaactcttgtggggatgaaagtc
aagaacagtccatgataatgcctgaaccttttggaggtgaaacttaagtg
aagtcagtagccaatatctgagtgtcacactttgtcctctttaaca

gaattccttctttatgtcctctaccatcatcatgagatatgcttttaaat
ccaggtctaccttttcaggtgtgttagggtgtcctggactgggcgaagtg
ggcgttctgtgttctgatgatggtgagtggtcctggtttctgttagtagg
attcttacgttttcctttcgccatctggcaatctctggagttagttgtta
tagttgtctttgttaagagattgttcctctgttgattttgttaccctcaa
tcagcaggcatgggagacaagctctctcctctgagtttcagtggtcagag
cagtctctgcaggcaagctctcctctttcggggaaggtgtacagttatct
ggtgtttggacctcctcctggctgaaggtgaaggcccaaaacaggatctt
tcccagaagctgtgttactttgaccaggaaggtggccggttgtctggagt
caaagatgtcgccgcctcagaagctctgtggctctcgccaggaaggtggc
cggttgtctggagacgaagatggcgccaccccaaaagctctgcgactctc
gcccatcccagaaatggctggcctctgtattccacatggtctcccgtgca
gcctgccctccgcggagtcccggagccaagaaggctcccgccggcgcctg
tgacacaaacctctcaggccgggcagacccccgtgctctcaccaggaagg
tggccggctgtctggagctgaagatggtgccgccccagaggctctgtgac
tctcggccgttacagaaacggctggcctctgtattccacacggtcacccg
tgcagcctgccctccgcagagtcccagagccaagaaaggctcccgccggc
gcctgtgacacaaacctctcagccaggcagacccctgtgctctcaacagg
aaaggtggccggctgtctggagccgaagatggcgctgcctcagaagctct
gtgactctcggccgtttacagaaacggctggcctctgtattccacatggg
ctccgtgcagctgccctcagcggagtccggagccaagaagccaagagttt
tagaaataatttttgcaacaaattaagaaaggccatgaattgaaaagaat
cagaggattatgagggaattggggcaaggaagaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_24051300_24052508
seq2: B6Ng01-313J17.b_49_1244 (reverse)

seq1  TGTTAAAGA-GAC-AAGTGAGCAACTCAGATATGTGGGCTACTAAACATC  48
      ||||||||| ||| ||||| |  |||||||||  | |||||||  || ||
seq2  TGTTAAAGAGGACAAAGTGTGACACTCAGATA--TTGGCTACT-GACTTC  47

seq1  ACATTACATGTTTCCACTTCAAAAGTGTCA-GCATTATCATGGAACTGGT  97
      || |   | |||||  || ||||||  ||| |||||||||||| |||| |
seq2  ACTT---AAGTTTCACCTCCAAAAGGTTCAGGCATTATCATGG-ACTGTT  93

seq1  CTTGGCCTTTCCATCCCCAC-AGAGTTTGCTTTGGTTTGGTCTACTCACA  146
      |||| |  || ||||||||| |||||| |||| |  || |||||||||||
seq2  CTTGAC--TTTCATCCCCACAAGAGTTGGCTTAG--TTTGTCTACTCACA  139

seq1  TTTTACTTAAATGGACACCAGGCTTTCCCAGAATAC-AGACTTCTTTGAT  195
       || |||  ||| ||||||| ||||||||||||||| |||||||||||||
seq2  -TTAACT--AAT-GACACCA-GCTTTCCCAGAATACAAGACTTCTTTGAT  184

seq1  -AGAATATCTCAATACACTATAAATAAAATGAGTAAATAACTTAAAATAT  244
       |||||||||||||||||||||||| |||||||||||| |||| ||||||
seq2  AAGAATATCTCAATACACTATAAAT-AAATGAGTAAAT-ACTT-AAATAT  231

seq1  ATATTTCTAACAATCACAGGGATGACAGAAATTCTATGCCTTGTCAGGAA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCTAACAATCACAGGGATGACAGAAATTCTATGCCTTGTCAGGAA  281

seq1  TTTACATTGTATATCCATAGGAATAGAGGATCTTTTCTATTCTTTTTTCT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATTGTATATCCATAGGAATAGAGGATCTTTTCTATTCTTTTTTCT  331

seq1  AATACATACATTCAAAGTAAACTTCCCATCAAAATGCATCTGTAAAATGA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATACATTCAAAGTAAACTTCCCATCAAAATGCATCTGTAAAATGA  381

seq1  TTGTTTAAGGAGACTATGAAAAGTACTAAAGGTATATAGGTTGGACTATA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTAAGGAGACTATGAAAAGTACTAAAGGTATATAGGTTGGACTATA  431

seq1  GAAGATGGTTCAATGTTAGGTGTCTCAAGGCTAATTTTCATGTTAAACAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGGTTCAATGTTAGGTGTCTCAAGGCTAATTTTCATGTTAAACAA  481

seq1  GGAGCCTCTCAGACAATCTTTAAATATCAGGTTTCTATTGAAATATTGAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCTCTCAGACAATCTTTAAATATCAGGTTTCTATTGAAATATTGAA  531

seq1  GAAAATGATCTAAGCCAGAAGTGAAGGACTTGGAGACCCCTCATTCCATG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGATCTAAGCCAGAAGTGAAGGACTTGGAGACCCCTCATTCCATG  581

seq1  TGCAGTGCTTTGGATTGTGGAATTAATAACTAAATCCTTAACTGACTGTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGCTTTGGATTGTGGAATTAATAACTAAATCCTTAACTGACTGTT  631

seq1  ACAGAGGTGTGTGTATAAGTCACTGAGTTGGGTACAAGGATATATCAGGG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGTGTGTGTATAAGTCACTGAGTTGGGTACAAGGATATATCAGGG  681

seq1  AAGGAAGTAATTTAATACCAGTCTGTGATCCTAAGGGACGAAAATTACAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGTAATTTAATACCAGTCTGTGATCCTAAGGGACGAAAATTACAG  731

seq1  AGAATAGAGAGCACCATTGCAAACCATGTTACTGAGCCACAAACTTATGG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAGAGAGCACCATTGCAAACCATGTTACTGAGCCACAAACTTATGG  781

seq1  CTAGATAGGTTATAGGTCCTGTGGGAAAAATTTAATAATCCTCCTAGTGG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATAGGTTATAGGTCCTGTGGGAAAAATTTAATAATCCTCCTAGTGG  831

seq1  CAACAACTACTAATATTGTGCTCAATGAGTATACTATTAAAGTAGTATCC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAACTACTAATATTGTGCTCAATGAGTATACTATTAAAGTAGTATCC  881

seq1  AACAGTTTATCAGTGCACCCTCAGATAAGTGACTCATACAGCTGTCATCA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTTTATCAGTGCACCCTCAGATAAGTGACTCATACAGCTGTCATCA  931

seq1  GAGAAGTTTCTTTTTTTGCAGTAGATGAAAATTAACATTGAGTCCTATAC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTTTCTTTTTTTGCAGTAGATGAAAATTAACATTGAGTCCTATAC  981

seq1  CTGGTCAATGTGTAAAGAATAAGACTGGAGTTCACATATATGTCCCCTGC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCAATGTGTAAAGAATAAGACTGGAGTTCACATATATGTCCCCTGC  1031

seq1  TCCCAAAGGGACATCTCTGTCATATACCTCTCCGCACCACACATTGATTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAAGGGACATCTCTGTCATATACCTCTCCGCACCACACATTGATTC  1081

seq1  TTGGGCTCAAGAATCATGGCAGACTAGGGAGTAGAAAATCATAAGAGCCA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCTCAAGAATCATGGCAGACTAGGGAGTAGAAAATCATAAGAGCCA  1131

seq1  TATGTGGTAGATGGTACAAAGAGATGGTTTTATGGATACAGCAGGGCCAT  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGGTAGATGGTACAAAGAGATGGTTTTATGGATACAGCAGGGCCAT  1181

seq1  GGAAGAAATGAATTC  1209
      |||||||||||||||
seq2  GGAAGAAATGAATTC  1196


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