BAC Information

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BAC

Clone NameB6Ng01-313O10
Chromosome3 (Build37)
Map Location 64,792,983 - 64,869,795
singlet/doubletdoublet
Overlap genenone
Upstream geneGmps, LOC670032, EG56544, 4930518C23Rik, LOC380739, EG637004, EG667031, EG637053, LOC672951, EG639869, EG667060, EG667069, LOC100040918, 4933425M15Rik, LOC670110
Downstream geneKcnab1, Ssr3, EG433604, EG667093, LOC100041083, 4931440P22Rik, Tiparp, LOC545530, LOC100040978, EG624866, Ccnl1, LOC625048, Veph1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-313O10.bB6Ng01-313O10.g
ACCGA104985GA104986
length1,0981,113
definitionB6Ng01-313O10.b B6Ng01-313O10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,792,983 - 64,794,091)(64,868,684 - 64,869,795)
sequence
gaattctccttcaagccttgttttctgtaaccatgaaaataaatttctca
tcatcagtctgtatatccatctatagatctcttgttggcagtgtttctct
ggagaactccaaccaatagaaacttctcactatagagaagaaagttatct
tcatccactgttgggtcctaggctaccttgtctagagctgggtgttcagg
actttcactccacatattctttctactcagatgtgacacttgctgaatga
ggttctagctgatgaccacctgatgtctgtaaaacactcatgttggagcc
gtgaggctctcctctatcacgctttatcatccctccttcaatcctttccc
catcagtcccattgaacatccatttgtaagttcacttctttcttcgtatt
tttccattcctattttactataaatagaggcatcatctcaatttaacaag
tagtatcatctcaaaaaaaaaaaaaaaaaaaagctgtgaacataatccca
gcacttgggaggcagaggtaggtggatttctgagttcaaggctagcctag
tctacagagtgagttccaggaaagtcagggctatacacagagaaatcctg
tctcaaaaaaaccaaaagaaaaaaatatgactcttgtttggaatttctga
ttgattcatcagttgagttcacagataactacactagaggttttctctag
tgtaatagctgatgactatgagttctaggtaaatcttactattctcagat
tgtactaaacttttccaataaaactctgttgtacaactgaggactttatt
tggtgattagcaacctcagagtaagcttcagtggtatcatcatacccatg
gattttctcacctgagtaacaccactctactaccctggcaagactgcaag
actctactcaattttcctgtgccaaggttctcattgttaccatgactgga
caatggaaagatcatacctttccatgctcaatacttcacccaaaggacac
taaagagctcagtggggcatggaaacagctcagtatctctgctcagcttc
tacataagcagctcctctcaaagctcctctccagcatatgttatcatt
gaattcttagggttctgatgtgcctattaaaatccaatgtgttgaaagcc
actaagaagccaagcacatctatcacaaaagtgtgaagagtataatcttg
gaataggcatgtaattctggaaaatgaacatttctagtttcagtgaagat
tgtgccagcaaccagacactgtagttatgctttaaattgtcagtgcaccc
caaaccacatgtgttgaaggcttgcctctgccttaccagcagttttaaag
atgtggggcttcaggaaatttttttggaaccatagtttcaaaacttatac
tgagagtggtggaaattttggaattttggtgttaattgggggaaaaagtt
atgaggatgtgcctgtaaaggctggccacatcttgtccctgctctccctt
gcatcctggctgctgaggtgaaagatttgtgtcaccacatcctctttgac
actcttctcaccacagatacagaaatagtggagtcaagtggccatgaact
gaaacctcagaaactgcgttctattcctttacagctaattcatctcaagt
atgtttctatagagccagagtggtgtttaacatgatgccagagcacggga
agagaccacatcagagaatagccagtggtatcatggctaatcaggaggag
attggaggccatggtaagaaagggatgaactgaagacccagctcaggaag
aagttttcaataaaggtgggtctcaatcttgctgccatcggttagagggg
acattttcttttcaccaacttcacagttttgtagctgtgccatagattat
agaatcctgcttctgaacctgccaggttctaatgtctatgctgtttctga
aatgagttttctgggctctgtttcctagagaccacaaatgcacatgtctg
tcttggagcttcagagtttgtgatttttgcagacaggtgatacagtcact
ttggggaaagccagaaggagcgggactggcatgcttgcattgttcatgat
acagctcagagcacacacccagtatcttggaggtggctacagcataagag
ctcagagcactacttggcttctttactaaggcattggatttttttaagca
gaaggagatttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_64792983_64794091
seq2: B6Ng01-313O10.b_47_1144

seq1  GAATTCTCCTTCAAGCCTTGTTTTCTGTAACCATGAAAATAAATTTCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTTCAAGCCTTGTTTTCTGTAACCATGAAAATAAATTTCTCA  50

seq1  TCATCAGTCTGTATATCCATCTATAGATCTCTTGTTGGCAGTGTTTCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAGTCTGTATATCCATCTATAGATCTCTTGTTGGCAGTGTTTCTCT  100

seq1  GGAGAACTCCAACCAATAGAAACTTCTCACTATAGAGAAGAAAGTTATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAACTCCAACCAATAGAAACTTCTCACTATAGAGAAGAAAGTTATCT  150

seq1  TCATCCACTGTTGGGTCCTAGGCTACCTTGTCTAGAGCTGGGTGTTCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCACTGTTGGGTCCTAGGCTACCTTGTCTAGAGCTGGGTGTTCAGG  200

seq1  ACTTTCACTCCACATATTCTTTCTACTCAGATGTGACACTTGCTGAATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCACTCCACATATTCTTTCTACTCAGATGTGACACTTGCTGAATGA  250

seq1  GGTTCTAGCTGATGACCACCTGATGTCTGTAAAACACTCATGTTGGAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTAGCTGATGACCACCTGATGTCTGTAAAACACTCATGTTGGAGCC  300

seq1  GTGAGGCTCTCCTCTATCACGCTTTATCATCCCTCCTTCAATCCTTTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGCTCTCCTCTATCACGCTTTATCATCCCTCCTTCAATCCTTTCCC  350

seq1  CATCAGTCCCATTGAACATCCATTTGTAAGTTCACTTCTTTCTTCGTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTCCCATTGAACATCCATTTGTAAGTTCACTTCTTTCTTCGTATT  400

seq1  TTTCCATTCCTATTTTACTATAAATAGAGGCATCATCTCAATTTAACAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATTCCTATTTTACTATAAATAGAGGCATCATCTCAATTTAACAAG  450

seq1  TAGTATCATCTCAAAAAAAAAAAAAAAAAAAAGCTGTGAACATAATCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATCATCTCAAAAAAAAAAAAAAAAAAAAGCTGTGAACATAATCCCA  500

seq1  GCACTTGGGAGGCAGAGGTAGGTGGATTTCTGAGTTCAAGGCTAGCCTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTGGGAGGCAGAGGTAGGTGGATTTCTGAGTTCAAGGCTAGCCTAG  550

seq1  TCTACAGAGTGAGTTCCAGGAAAGTCAGGGCTATACACAGAGAAATCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGAGTGAGTTCCAGGAAAGTCAGGGCTATACACAGAGAAATCCTG  600

seq1  TCTCAAAAAAACCAAAAGAAAAAAATATGACTCTTGTTTGGAATTTCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAAAAAACCAAAAGAAAAAAATATGACTCTTGTTTGGAATTTCTGA  650

seq1  TTGATTCATCAGTTGAGTTCACAGATAACTACACTAGAGGTTTTCTCTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTCATCAGTTGAGTTCACAGATAACTACACTAGAGGTTTTCTCTAG  700

seq1  TGTAATAGCTGATGACTATGAGTTCTAGGTAAATCTTACTATTCTCAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATAGCTGATGACTATGAGTTCTAGGTAAATCTTACTATTCTCAGAT  750

seq1  TGTACTAAACTTTTCCAATAAAACTCTGTTGTACAACTGAGGACTTTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTAAACTTTTCCAATAAAACTCTGTTGTACAACTGAGGACTTTATT  800

seq1  TGGTGATTAGCAACCTCAGAGTAAGCTTCAGTGGTATCATCATACCCATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGATTAGCAACCTCAGAGTAAGCTTCAGTGGTATCATCATACCCATG  850

seq1  GATTTTCTCACCTGAGTAACACCACTCTACTACCCTGGCAAGACTGCAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTCTCACCTGAGTAACACCACTCTACTACCCTGGCAAGACTGCAAG  900

seq1  ACTCTACTCAATTTTCCTGTGCCAAGGTTCTCATTGTTACCATGACTGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTACTCAATTTTCCTGTGCCAAGGTTCTCATTGTTACCATGACTGGA  950

seq1  CAAATGGAAAGATCATACCTTTCCATGCTCAATACTTCACCCAAAGGACA  1000
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-AATGGAAAGATCATACCTTTCCATGCTCAATACTTCACCCAAAGGACA  999

seq1  CTAAAAGAGCCTCAGT-GGGCATGGAAACAGCTCAGTTATCTTCTGCTCA  1049
      || |||||| |||||| ||||||||||||||||||| |||| ||||||||
seq2  CT-AAAGAG-CTCAGTGGGGCATGGAAACAGCTCAG-TATC-TCTGCTCA  1045

seq1  GCCTTCTACATAAGCAGCTCCTCTCAAAGGCCTTCCTCTCCCAACCCTAT  1099
      | |||||||||||||||||||||||||||    ||||||||  | | |||
seq2  G-CTTCTACATAAGCAGCTCCTCTCAAAG---CTCCTCTCC--AGCATAT  1089

seq1  GTTTATCATT  1109
      | ||||||||
seq2  G-TTATCATT  1098

seq1: chr3_64868684_64869795
seq2: B6Ng01-313O10.g_65_1177 (reverse)

seq1  TAAAAACTCCTTCTGC-TAAAAAAAACCCATGGCTTAGTAAAAGAGCC-A  48
      ||||| |||||||||| |||||||| || ||| |||||||||  |||| |
seq2  TAAAATCTCCTTCTGCTTAAAAAAATCCAATGCCTTAGTAAAGAAGCCAA  50

seq1  GTAGTGGCTCTTGAGCTCTTTATGCTGGTAG-CACCTC--AGATACTTGG  95
      ||||| |||| ||||||| ||||||| |||| ||||||  |||||| |||
seq2  GTAGT-GCTC-TGAGCTC-TTATGCT-GTAGCCACCTCCAAGATAC-TGG  95

seq1  GTGTGGTGCTTCTGAGCTGTATCATG-ACAATGCAAGCATGCCAGTCCCG  144
      |||| |||| |||||||||||||||| |||||||||||||||||||||||
seq2  GTGT-GTGC-TCTGAGCTGTATCATGAACAATGCAAGCATGCCAGTCCCG  143

seq1  CTCCTCTTGGCTTT-CCCAAAGTGACTGTATCACCTGTCTGCAAAAATCA  193
      |||||  ||||||| |||||||||||||||||||||||||||||||||||
seq2  CTCCTTCTGGCTTTCCCCAAAGTGACTGTATCACCTGTCTGCAAAAATCA  193

seq1  CAAACTCTGAAGCTCCAAGACAGACATGTGCATTTGTGGTCTCTAGG-AA  242
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CAAACTCTGAAGCTCCAAGACAGACATGTGCATTTGTGGTCTCTAGGAAA  243

seq1  CAGAGCCCAGAAAACTCATTTCAGAAACAGCATAGACATTAGAACCTGGC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCCAGAAAACTCATTTCAGAAACAGCATAGACATTAGAACCTGGC  293

seq1  AGGTTCAGAAGCAGGATTCTATAATCTATGGCACAGCTACAAAACTGTGA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCAGAAGCAGGATTCTATAATCTATGGCACAGCTACAAAACTGTGA  343

seq1  AGTTGGTGAAAAGAAAATGTCCCCTCTAACCGATGGCAGCAAGATTGAGA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGTGAAAAGAAAATGTCCCCTCTAACCGATGGCAGCAAGATTGAGA  393

seq1  CCCACCTTTATTGAAAACTTCTTCCTGAGCTGGGTCTTCAGTTCATCCCT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCTTTATTGAAAACTTCTTCCTGAGCTGGGTCTTCAGTTCATCCCT  443

seq1  TTCTTACCATGGCCTCCAATCTCCTCCTGATTAGCCATGATACCACTGGC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTACCATGGCCTCCAATCTCCTCCTGATTAGCCATGATACCACTGGC  493

seq1  TATTCTCTGATGTGGTCTCTTCCCGTGCTCTGGCATCATGTTAAACACCA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTCTGATGTGGTCTCTTCCCGTGCTCTGGCATCATGTTAAACACCA  543

seq1  CTCTGGCTCTATAGAAACATACTTGAGATGAATTAGCTGTAAAGGAATAG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGCTCTATAGAAACATACTTGAGATGAATTAGCTGTAAAGGAATAG  593

seq1  AACGCAGTTTCTGAGGTTTCAGTTCATGGCCACTTGACTCCACTATTTCT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCAGTTTCTGAGGTTTCAGTTCATGGCCACTTGACTCCACTATTTCT  643

seq1  GTATCTGTGGTGAGAAGAGTGTCAAAGAGGATGTGGTGACACAAATCTTT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTGTGGTGAGAAGAGTGTCAAAGAGGATGTGGTGACACAAATCTTT  693

seq1  CACCTCAGCAGCCAGGATGCAAGGGAGAGCAGGGACAAGATGTGGCCAGC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCAGCAGCCAGGATGCAAGGGAGAGCAGGGACAAGATGTGGCCAGC  743

seq1  CTTTACAGGCACATCCTCATAACTTTTTCCCCCAATTAACACCAAAATTC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACAGGCACATCCTCATAACTTTTTCCCCCAATTAACACCAAAATTC  793

seq1  CAAAATTTCCACCACTCTCAGTATAAGTTTTGAAACTATGGTTCCAAAAA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTTCCACCACTCTCAGTATAAGTTTTGAAACTATGGTTCCAAAAA  843

seq1  AATTTCCTGAAGCCCCACATCTTTAAAACTGCTGGTAAGGCAGAGGCAAG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCTGAAGCCCCACATCTTTAAAACTGCTGGTAAGGCAGAGGCAAG  893

seq1  CCTTCAACACATGTGGTTTGGGGTGCACTGACAATTTAAAGCATAACTAC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAACACATGTGGTTTGGGGTGCACTGACAATTTAAAGCATAACTAC  943

seq1  AGTGTCTGGTTGCTGGCACAATCTTCACTGAAACTAGAAATGTTCATTTT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTGGTTGCTGGCACAATCTTCACTGAAACTAGAAATGTTCATTTT  993

seq1  CCAGAATTACATGCCTATTCCAAGATTATACTCTTCACACTTTTGTGATA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAATTACATGCCTATTCCAAGATTATACTCTTCACACTTTTGTGATA  1043

seq1  GATGTGCTTGGCTTCTTAGTGGCTTTCAACACATTGGATTTTAATAGGCA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGCTTGGCTTCTTAGTGGCTTTCAACACATTGGATTTTAATAGGCA  1093

seq1  CATCAGAACCCTAAGAATTC  1112
      ||||||||||||||||||||
seq2  CATCAGAACCCTAAGAATTC  1113