BAC Information

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BAC

Clone NameB6Ng01-313P06
Chromosome3 (Build37)6 (Build37)
Map Location 17,573,960 - 17,574,41311,279,915 - 11,281,042
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040034, LOC100040059, EG383936, LOC622737
Downstream geneENSMUSG00000074674, LOC100040120, Cypt12, LOC545508, Bhlhb5, Cyp7b1, LOC622921, LOC100040153
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-313P06.bB6Ng01-313P06.g
ACCGA105025GA105026
length1,0331,117
definitionB6Ng01-313P06.b B6Ng01-313P06.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(17,573,960 - 17,574,413)(11,279,915 - 11,281,042)
sequence
gaattctttgtttagctctgcaccccatttttaatgggtttatttgattt
cctggagtgcagcttcttgagttctttgtatatattggatattagtcccc
tatcagatttaggattggtaaaaatcctttcccaatttagcagccttatt
tataatagccagaagctggaaagaacccagatatccctcaacagaggaat
ggatacagaaaatgtggtacatttacacaatggagtactagtcagctatt
aaaaacaatgaatttatgaaattcataggcaaatggatagatctggaggg
tatcgtcctgagtgaggtaacccagtcacagaagaactcacaggataggc
actcactaataagtggatattagctcagagacttagaatacccaagatac
aatttacaaaacacataaaattcaagaagaaggaatgacaaattgtggat
actttgtccctccttagaatggggacaaaaaacccatggaagtagttaca
gaggcaaagtttggagctgagactaaaggatggaccatccagagactgcc
ctacctggggatccattccataatcagccaacaaacacatacactattgc
atatgccaacaatattttgccaacaggaccgtgatatagttgtctcttgt
gaggctaagccagtggatgctaacagtcagtggatgttcacagtcacagg
atggaacacagcgtccccaatggaggagatagagaaagtacccaaggagc
tgaaggggtttgcaaccctatatgaggaacaataatatgaactaaccagt
agccccagagcttgtgtgtctagctgcatctgtagcagaagatagcctca
ttggccatcattgggaggagagcctcttggtcttgtaatgagtatttgcc
tcagtacaagggaataccagggccagaaagcgggattgggtgtgttgggg
agcaggccaggggggtaatagggtctttcaggatagcatttgaaatgtaa
atgaagaaaatactgtgatcaaatttgtttgaa

gaattcactggaaacatattttacagctctgtacatctgagtattgcaaa
ccaaaaagaaagttgaataccctacataaatataggctgtagcagttaca
aagatagcatgcatgtgattggtcagaggggcagggaaggcattatcagt
tgtggaattgagtatgtgaatgtgtgtaaacaggaaaccataacttccaa
gggaaatgaacagtgggtcagtcagctgtggaaacagtgcttgttcttca
gactgtctttcctgtagcagagaatgatagcttttcaaatacccaagaca
tttcagtcagaacctttagaaatacatattgttagctaaataaaatttga
taattttacaagtactgatgtcttcactaggacagctctcaacactttgt
cttagccttctaactattaatatctggagtagcatcattataatctcaaa
ccacacatgacatcatcaggtatgaaatacacaacaagaacaaataatta
taggctgttattaataacatatactaaatcagaatccaggggagatactg
agaaacactacgcaaagaggaagaaggaacagaatggggaaaatatatat
gatattcacattagctagttaatctgacttcatttatgaagtcttctaaa
ttggaaatacatttagtgtgcaaaccatatatttcacctggtacataata
aaacaaagattgttagtgattataaccaaaagaatcaacatataagtacc
catattcaacttataggtccaagagttaaaacaaaaacccaggtggtaaa
tgataaattgacttaaataataacataatccttctggcttttatgattct
gacttaagagatcaccttccttcttttgtttccttaatactgcacctgct
atgctattttgctacatgcatccatgcatgagctccttttattggatatg
tttacgttttgaagaaaagactcacaacggtgtttaaccaacatagcaga
gccctaatcacaccccagcaacacatatgatgctactaagctaaactgtg
cactagattgtttatgctgacctggtggacaatttatcatgtttcaaaca
ctattagtagcatatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_17573960_17574413
seq2: B6Ng01-313P06.b_1026_1078 (reverse)

seq1  TTCAAACAAATTTGATCTTTCCCTATTTCTCACATCAGATCCAGACCCTG  50
                                                        
seq2  --------------------------------------------------  0

seq1  CCACAGCTAATGTTGCAGCTGCTGCTGGGAAGGACAGGTCTACTCCCACT  100
                                                        
seq2  --------------------------------------------------  0

seq1  ACTGGTTCATACGTATTCCTTATTGGCCTATGCAAGCAGTCTTTCTGAAC  150
                                                        
seq2  --------------------------------------------------  0

seq1  TTCCTTCCTTTCTTCCTTTCTTCCTTCCTTCCTTTCTTCCTTTCTTCCTT  200
                                                        
seq2  --------------------------------------------------  0

seq1  CCTTCCTTTCTTCCTTTCTTCCTTCCTTTCTTTATTTCTTTCTCTCTCTC  250
                                                        
seq2  --------------------------------------------------  0

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTC  300
                                                        
seq2  --------------------------------------------------  0

seq1  TTTCTTTCTTTCTTTTCTCTCTCTTTCTTTCTTTCATTCTTTCTTTCTTT  350
                                                        
seq2  --------------------------------------------------  0

seq1  TTCTCTTTCTTTCCTTCTTTCTTTCTTTTCTCTTCCTTCCTTCTTTCTTT  400
                                                      ||
seq2  ------------------------------------------------TT  2

seq1  CTTTCTTTTTTTCTTTTTTAGA-TATTTTCTTTATTGACATTTCAAATGT  449
      |   |   |    ||  | | | ||||||||| ||| |||||||||||| 
seq2  CAAACAAAT----TTGATCACAGTATTTTCTTCATTTACATTTCAAATGC  48

seq1  TATCC  454
      |||||
seq2  TATCC  53


seq1: chr6_11279915_11281042
seq2: B6Ng01-313P06.g_65_1181

seq1  GAATTCACTGGAAACATATTTTACAGCTCTGTACATCTGAGTATTGCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGGAAACATATTTTACAGCTCTGTACATCTGAGTATTGCAAA  50

seq1  CCAAAAAGAAAGTTGAATACCCTACATAAATATAGGCTGTAGCAGTTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAGAAAGTTGAATACCCTACATAAATATAGGCTGTAGCAGTTACA  100

seq1  AAGATAGCATGCATGTGATTGGTCAGAGGGGCAGGGAAGGCATTATCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAGCATGCATGTGATTGGTCAGAGGGGCAGGGAAGGCATTATCAGT  150

seq1  TGTGGAATTGAGTATGTGAATGTGTGTAAACAGGAAACCATAACTTCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAATTGAGTATGTGAATGTGTGTAAACAGGAAACCATAACTTCCAA  200

seq1  GGGAAATGAACAGTGGGTCAGTCAGCTGTGGAAACAGTGCTTGTTCTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATGAACAGTGGGTCAGTCAGCTGTGGAAACAGTGCTTGTTCTTCA  250

seq1  GACTGTCTTTCCTGTAGCAGAGAATGATAGCTTTTCAAATACCCAAGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTCTTTCCTGTAGCAGAGAATGATAGCTTTTCAAATACCCAAGACA  300

seq1  TTTCAGTCAGAACCTTTAGAAATACATATTGTTAGCTAAATAAAATTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTCAGAACCTTTAGAAATACATATTGTTAGCTAAATAAAATTTGA  350

seq1  TAATTTTACAAGTACTGATGTCTTCACTAGGACAGCTCTCAACACTTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTACAAGTACTGATGTCTTCACTAGGACAGCTCTCAACACTTTGT  400

seq1  CTTAGCCTTCTAACTATTAATATCTGGAGTAGCATCATTATAATCTCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCCTTCTAACTATTAATATCTGGAGTAGCATCATTATAATCTCAAA  450

seq1  CCACACATGACATCATCAGGTATGAAATACACAACAAGAACAAATAATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACATGACATCATCAGGTATGAAATACACAACAAGAACAAATAATTA  500

seq1  TAGGCTGTTATTAATAACATATACTAAATCAGAATCCAGGGGAGATACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTGTTATTAATAACATATACTAAATCAGAATCCAGGGGAGATACTG  550

seq1  AGAAACACTACGCAAAGAGGAAGAAGGAACAGAATGGGGAAAATATATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACACTACGCAAAGAGGAAGAAGGAACAGAATGGGGAAAATATATAT  600

seq1  GATATTCACATTAGCTAGTTAATCTGACTTCATTTATGAAGTCTTCTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTCACATTAGCTAGTTAATCTGACTTCATTTATGAAGTCTTCTAAA  650

seq1  TTGGAAATACATTTAGTGTGCAAACCATATATTTCACCTGGTACATAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAATACATTTAGTGTGCAAACCATATATTTCACCTGGTACATAATA  700

seq1  AAACAAAGATTGTTAGTGATTATAACCAAAAGAATCAACATATAAGTACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAGATTGTTAGTGATTATAACCAAAAGAATCAACATATAAGTACC  750

seq1  CATATTCAACTTATAGGTCCAAGAGTTAAAACAAAAACCCAGGTGGTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTCAACTTATAGGTCCAAGAGTTAAAACAAAAACCCAGGTGGTAAA  800

seq1  TGATAAATTGACTTAAATAATAACATAATCCTTCTGGCTTTTATGATTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAATTGACTTAAATAATAACATAATCCTTCTGGCTTTTATGATTCT  850

seq1  GACTTAAGAGATCACCTTCCTTCTTTTGTTTCCTTAATACTGCACCTGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAAGAGATCACCTTCCTTCTTTTGTTTCCTTAATACTGCACCTGCT  900

seq1  ATGCTATTTTGCTACATGCATCCATGCATGAGCTCC-TTTATTGGATATG  949
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATGCTATTTTGCTACATGCATCCATGCATGAGCTCCTTTTATTGGATATG  950

seq1  TTTACGTTTTGAAGAAAAGACTCAACAACGGGTGTTTAACCAACAATAGC  999
      ||||||||||||||||||||||| ||||| |||||||||||||| |||||
seq2  TTTACGTTTTGAAGAAAAGACTC-ACAAC-GGTGTTTAACCAAC-ATAGC  997

seq1  AGAGCCCTAATCACAACCCCAGCAAACACATAATGAATGCTACTAAGGCT  1049
      |||||||||||||| |||||||| ||||||| ||| |||||||||| |||
seq2  AGAGCCCTAATCAC-ACCCCAGC-AACACAT-ATG-ATGCTACTAA-GCT  1042

seq1  AAACTGTGCCAACTAGATTG-TTATGCTGACCCTGTGGGACAATTTATCA  1098
      |||||||||  ||||||||| ||||||||| ||||  |||||||||||||
seq2  AAACTGTGC--ACTAGATTGTTTATGCTGA-CCTGGTGGACAATTTATCA  1089

seq1  TGTTTCAAAACAACTATTAGTAGCATATGC  1128
      |||||||||   ||||||||||||||||||
seq2  TGTTTCAAA--CACTATTAGTAGCATATGC  1117


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