BAC Information

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BAC

Clone NameB6Ng01-313P16
Chromosome3 (Build37)
Map Location 62,354,979 - 62,508,484
singlet/doubletdoublet
Overlap geneGpr149
Upstream geneLOC669910, LOC676965, 4631416L12Rik, Dhx36
Downstream geneLOC676984, LOC666967, Mme, Plch1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-313P16.bB6Ng01-313P16.g
ACCGA105045GA105046
length1,1981,149
definitionB6Ng01-313P16.b B6Ng01-313P16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,507,279 - 62,508,484)(62,354,979 - 62,356,142)
sequence
gaattcatagctcttcagtgagatttcccataaggaagcaggaagtatgg
ttgtacattgtagcaatcattctaaaataatggagatttcaaggtaatct
aagtgttcatacacatgctgcataaatatatcatgatgtactcaaagaaa
cgaacataatacaactcttagaatggattttattttaaaaagttgttcaa
taaaaattaaaattggagaaaagcacatcagtagatgaaattcttacaaa
aatactttaaaatatgaataagggcaaccacacaaatgtttcttatatat
gcatacaaggggagtgtaaagtcataggtctctccacacagaaacccaag
aagagaagaaggtagagtgagaagctcattcctgctatcactaggaagga
catgccagatgtcttacagttttatggaaaaaaacattcaccatggtcac
ttgccatggtcacaagacatcactgagtggggaaattgacagagcagaca
aagaagagccaggattgctagtgatgctgccagacaagggagagggcatg
agttatatataataacattcataaaccctgtaaaaaaatcttacaacagt
agaaatttctgctccaactataatgaagttaaataaatgatctatgaaaa
tactggaagtttattgacttaataatataaattcaagtcatatgttaaat
tttctagatttaaaccattggtttggtaatttaaaacatacccattcatt
atgtgctctgaagcaacaatgaccatgcttccctgtagaacaattattta
aataacttataaataacataccatgtgttttgatcatcatttgtatttat
gtgactttgaggattggaaataagctaatgtagattataaatcttacatt
ccatatttaatatctgcaaattctcttacaggtcctcaaaacaaaaaatt
gatatatctctgggactttataatgtagtgttagtattagagtgaaaaaa
ttcagagattttttatactataatatcttgtgtaggtcactgctatttga
aacgtagaggaaacaaatgtgaatgtccttaaagaaaaaaagtgttatag
taatatgtttataaataaaaccattaaataatatttaactctttagcttc
ttatatattccgaagccatttttggacctgatgattgaacaagaaagg

gaattcaaatatgtttaattcaatatgatataaagcttaattcaaattcc
acttggttgaaaataagccattctgatgaaaaaaatgttcaacctaaata
taaaatctcgttttgcatcaatcttatagccagaacagaattttagtgaa
catattatttcatttcagttagtttcctccttacagaaagtgtgatcttc
atattttcaaatcatactttgaagtccatctaggttgatgggcacagcca
tcacagctacaggaattgctatgggaactgtgagtttaaatgtgttatta
gtttgagaattattaaaaggtgttttccattttttggcctaatagaaata
aaacgacttgtattctatgagttacatatatgttaaacattcaagtttat
tttcaagttttatcaattttttctaacaaaaatgagagacaaaactaact
tgaaatgaaatataaattgggcttggtggtgtcaatttttaaccccagaa
atttgggaagctaatataaccgggtctcaattctaagacctgactagacc
actttgagttcaatgccaacctgggcaacttggtgaaactttctcaaaag
aaaaaaattatttagaaagaaccacagatatcgttcattggtaggatttt
cacatagtatgtataaatctctggattcaattcttataaaataaaaaata
ttaattataaattatatttagaaaaaaatagtattctatcagaaataaga
agcaaattaatttttcacagggttgagaatatgtctcagggctaaagtac
ttgcttcatatgtatgcccctgaattttatccctagatcctcaaagaggg
aaaagggaaaataatttctcttatcttaatgaaaattactcatctgctgg
aacgttgtgtgctgtgtggatatcttaccaacaatggaaagaaaaacatt
ccttactgtcttagagttcattgctagagagacactatgaccatggcact
cttataaaatgaaacaccccccccaaaaaaaacatttaatttctgctgct
atagtttaaatgtagtccattatcaattgataacacttagcatgagaacg
aacatggtgctagaacaggacctgaagtcttaccgctggatctcaggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_62507279_62508484
seq2: B6Ng01-313P16.b_51_1248 (reverse)

seq1  CCTTTTTTTGTTCATCTATCAGGGTTCAAAAATGCTTTCTG-ATATATAA  49
       | ||| |||||||   |||| ||| ||||||||  ||| | ||||||||
seq2  -CCTTTCTTGTTCAATCATCA-GGTCCAAAAATGGCTTCGGAATATATAA  48

seq1  AGAACT-AAGAGTTAAATATTTATTTTATTTGTTTTATTTTATAAACATA  98
        | || ||||||||||||||   |||| | |||||| ||||||||||||
seq2  GAAGCTAAAGAGTTAAATATT--ATTTAATGGTTTTA-TTTATAAACATA  95

seq1  TTACTAT-ACACTTTTTTTTCTTTAAGGGAACATTTCACATTTTGTTTCC  147
      ||||||| |||| |||||||||||||||  ||| |||||| |||||||||
seq2  TTACTATAACAC-TTTTTTTCTTTAAGG--ACA-TTCACA-TTTGTTTCC  140

seq1  TCTACGTTTCAAATAGCAGTGACCTACAACAAGATATTATAGTTATAAAT  197
      ||||||||||||||||||||||||||| |||||||||||||||   ||| 
seq2  TCTACGTTTCAAATAGCAGTGACCTAC-ACAAGATATTATAGTATAAAAA  189

seq1  ATCTCTGAATTTTTTCACTCTAATACTAACACTACATTATAAAGTCCCAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGAATTTTTTCACTCTAATACTAACACTACATTATAAAGTCCCAG  239

seq1  AGATATATCAATTTTTTGTTTTGAGGACCTGTAAGAGAATTTGCAGATAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATATCAATTTTTTGTTTTGAGGACCTGTAAGAGAATTTGCAGATAT  289

seq1  TAAATATGGAATGTAAGATTTATAATCTACATTAGCTTATTTCCAATCCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATGGAATGTAAGATTTATAATCTACATTAGCTTATTTCCAATCCT  339

seq1  CAAAGTCACATAAATACAAATGATGATCAAAACACATGGTATGTTATTTA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTCACATAAATACAAATGATGATCAAAACACATGGTATGTTATTTA  389

seq1  TAAGTTATTTAAATAATTGTTCTACAGGGAAGCATGGTCATTGTTGCTTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTATTTAAATAATTGTTCTACAGGGAAGCATGGTCATTGTTGCTTC  439

seq1  AGAGCACATAATGAATGGGTATGTTTTAAATTACCAAACCAATGGTTTAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACATAATGAATGGGTATGTTTTAAATTACCAAACCAATGGTTTAA  489

seq1  ATCTAGAAAATTTAACATATGACTTGAATTTATATTATTAAGTCAATAAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGAAAATTTAACATATGACTTGAATTTATATTATTAAGTCAATAAA  539

seq1  CTTCCAGTATTTTCATAGATCATTTATTTAACTTCATTATAGTTGGAGCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGTATTTTCATAGATCATTTATTTAACTTCATTATAGTTGGAGCA  589

seq1  GAAATTTCTACTGTTGTAAGATTTTTTTACAGGGTTTATGAATGTTATTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTCTACTGTTGTAAGATTTTTTTACAGGGTTTATGAATGTTATTA  639

seq1  TATATAACTCATGCCCTCTCCCTTGTCTGGCAGCATCACTAGCAATCCTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAACTCATGCCCTCTCCCTTGTCTGGCAGCATCACTAGCAATCCTG  689

seq1  GCTCTTCTTTGTCTGCTCTGTCAATTTCCCCACTCAGTGATGTCTTGTGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTCTTTGTCTGCTCTGTCAATTTCCCCACTCAGTGATGTCTTGTGA  739

seq1  CCATGGCAAGTGACCATGGTGAATGTTTTTTTCCATAAAACTGTAAGACA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGCAAGTGACCATGGTGAATGTTTTTTTCCATAAAACTGTAAGACA  789

seq1  TCTGGCATGTCCTTCCTAGTGATAGCAGGAATGAGCTTCTCACTCTACCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCATGTCCTTCCTAGTGATAGCAGGAATGAGCTTCTCACTCTACCT  839

seq1  TCTTCTCTTCTTGGGTTTCTGTGTGGAGAGACCTATGACTTTACACTCCC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCTTCTTGGGTTTCTGTGTGGAGAGACCTATGACTTTACACTCCC  889

seq1  CTTGTATGCATATATAAGAAACATTTGTGTGGTTGCCCTTATTCATATTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTATGCATATATAAGAAACATTTGTGTGGTTGCCCTTATTCATATTT  939

seq1  TAAAGTATTTTTGTAAGAATTTCATCTACTGATGTGCTTTTCTCCAATTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTATTTTTGTAAGAATTTCATCTACTGATGTGCTTTTCTCCAATTT  989

seq1  TAATTTTTATTGAACAACTTTTTAAAATAAAATCCATTCTAAGAGTTGTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTATTGAACAACTTTTTAAAATAAAATCCATTCTAAGAGTTGTA  1039

seq1  TTATGTTCGTTTCTTTGAGTACATCATGATATATTTATGCAGCATGTGTA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTCGTTTCTTTGAGTACATCATGATATATTTATGCAGCATGTGTA  1089

seq1  TGAACACTTAGATTACCTTGAAATCTCCATTATTTTAGAATGATTGCTAC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACACTTAGATTACCTTGAAATCTCCATTATTTTAGAATGATTGCTAC  1139

seq1  AATGTACAACCATACTTCCTGCTTCCTTATGGGAAATCTCACTGAAGAGC  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTACAACCATACTTCCTGCTTCCTTATGGGAAATCTCACTGAAGAGC  1189

seq1  TATGAATTC  1206
      |||||||||
seq2  TATGAATTC  1198


seq1: chr3_62354979_62356142
seq2: B6Ng01-313P16.g_68_1216

seq1  GAATTCAAATATGTTTAATTCAATATGATATAAAGCTTAATTCAAATTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATATGTTTAATTCAATATGATATAAAGCTTAATTCAAATTCC  50

seq1  ACTTGGTTGAAAATAAGCCATTCTGATGAAAAAAATGTTCAACCTAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGTTGAAAATAAGCCATTCTGATGAAAAAAATGTTCAACCTAAATA  100

seq1  TAAAATCTCGTTTTGCATCAATCTTATAGCCAGAACAGAATTTTAGTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCTCGTTTTGCATCAATCTTATAGCCAGAACAGAATTTTAGTGAA  150

seq1  CATATTATTTCATTTCAGTTAGTTTCCTCCTTACAGAAAGTGTGATCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTATTTCATTTCAGTTAGTTTCCTCCTTACAGAAAGTGTGATCTTC  200

seq1  ATATTTTCAAATCATACTTTGAAGTCCATCTAGGTTGATGGGCACAGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTCAAATCATACTTTGAAGTCCATCTAGGTTGATGGGCACAGCCA  250

seq1  TCACAGCTACAGGAATTGCTATGGGAACTGTGAGTTTAAATGTGTTATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGCTACAGGAATTGCTATGGGAACTGTGAGTTTAAATGTGTTATTA  300

seq1  GTTTGAGAATTATTAAAAGGTGTTTTCCATTTTTTGGCCTAATAGAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAGAATTATTAAAAGGTGTTTTCCATTTTTTGGCCTAATAGAAATA  350

seq1  AAACGACTTGTATTCTATGAGTTACATATATGTTAAACATTCAAGTTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGACTTGTATTCTATGAGTTACATATATGTTAAACATTCAAGTTTAT  400

seq1  TTTCAAGTTTTATCAATTTTTTCTAACAAAAATGAGAGACAAAACTAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGTTTTATCAATTTTTTCTAACAAAAATGAGAGACAAAACTAACT  450

seq1  TGAAATGAAATATAAATTGGGCTTGGTGGTGTCAATTTTTAACCCCAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGAAATATAAATTGGGCTTGGTGGTGTCAATTTTTAACCCCAGAA  500

seq1  ATTTGGGAAGCTAATATAACCGGGTCTCAATTCTAAGACCTGACTAGACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGGAAGCTAATATAACCGGGTCTCAATTCTAAGACCTGACTAGACC  550

seq1  ACTTTGAGTTCAATGCCAACCTGGGCAACTTGGTGAAACTTTCTCAAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGAGTTCAATGCCAACCTGGGCAACTTGGTGAAACTTTCTCAAAAG  600

seq1  AAAAAAATTATTTAGAAAGAACCACAGATATCGTTCATTGGTAGGATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATTATTTAGAAAGAACCACAGATATCGTTCATTGGTAGGATTTT  650

seq1  CACATAGTATGTATAAATCTCTGGATTCAATTCTTATAAAATAAAAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGTATGTATAAATCTCTGGATTCAATTCTTATAAAATAAAAAATA  700

seq1  TTAATTATAAATTATATTTAGAAAAAAATAGTATTCTATCAGAAATAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTATAAATTATATTTAGAAAAAAATAGTATTCTATCAGAAATAAGA  750

seq1  AGCAAATTAATTTTTCACAGGGTTGAGAATATGTCTCAGGGCTAAAGTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATTAATTTTTCACAGGGTTGAGAATATGTCTCAGGGCTAAAGTAC  800

seq1  TTGCTTCATATGTATGCCCCTGAATTTTATCCCTAGATCCTCAAAGAGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCATATGTATGCCCCTGAATTTTATCCCTAGATCCTCAAAGAGGG  850

seq1  AAAAGGGAAAATAATTTCTCTTATCTTAATGAAAATTACTCATCTGCTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGAAAATAATTTCTCTTATCTTAATGAAAATTACTCATCTGCTGG  900

seq1  AACGTTGTGTGCTGTTGTGGATATCTTACCAAACAATGGAAAG-AAAACA  949
      |||||||||||||| ||||||||||||||| |||||||||||| ||||||
seq2  AACGTTGTGTGCTG-TGTGGATATCTTACC-AACAATGGAAAGAAAAACA  948

seq1  TTCCTTACTGTCTTAGAGTTTCATTGCTAAGAAGAGACACTATGACCATG  999
      |||||||||||||||||| ||||||||||   ||||||||||||||||||
seq2  TTCCTTACTGTCTTAGAG-TTCATTGCTA--GAGAGACACTATGACCATG  995

seq1  GCAACTCTTATAAAAAATGAAAACACCCCCCCAAAAAAAACATTTAATTT  1049
      || ||||||||  |||||||||   |||||||||||||||||||||||||
seq2  GC-ACTCTTAT--AAAATGAAACACCCCCCCCAAAAAAAACATTTAATTT  1042

seq1  CTGCTGGCTTATAGTTTTAAATGTTTAGTCCATTATCAATATGATAACAC  1099
      ||||||   ||||| ||||||||  ||||||||||||||| |||||||||
seq2  CTGCTG--CTATAG-TTTAAATG--TAGTCCATTATCAAT-TGATAACAC  1086

seq1  TTAGCATGTAGACAGACATGGTGCTAGAACAGGAGCTGAGAGTTCTACCG  1149
      ||||||||   ||  ||||||||||||||||||| |||| |||  |||||
seq2  TTAGCATGAGAACGAACATGGTGCTAGAACAGGACCTGA-AGTCTTACCG  1135

seq1  CTTGATCTTCAGGCA  1164
      || |||| |||||||
seq2  CTGGATC-TCAGGCA  1149


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