BAC Information

Click to search

BAC

Clone NameB6Ng01-314I10
Chromosome3 (Build37)
Map Location 105,120,083 - 105,229,873
singlet/doubletdoublet
Overlap genenone
Upstream geneEG433634, LOC668622, Lrig2, Slc16a1, EG624251, 7530404M11Rik, Ppm1j, Rhoc, Mov10, Capza1, St7l, LOC100043572, Wnt2b, Cttnbp2nl, 4930564D02Rik
Downstream gene1700095B22Rik, Kcnd3, Ddx20, 6530418L21Rik, Rap1a, EG433637, Adora3, I830077J02Rik, Atp5f1, Wdr77, Ovgp1, 1700027A23Rik, LOC100043591, Bclp2, LOC100043594, LOC670819, LOC100043129, Chia, Chi3l3, Chi3l4, EG624696, BC051070
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-314I10.bB6Ng01-314I10.g
ACCGA105432GA105433
length9881,083
definitionB6Ng01-314I10.b B6Ng01-314I10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,120,083 - 105,120,966)(105,228,809 - 105,229,873)
sequence
gaattctctggctggatacaagtctcttctgatacaaggaaacatagcct
ggactctccagagaagtgtaaccaatgggagaggtagtatttatttatat
atttttatataatattgttatgttacatatattatctgcactatgcaata
gcaagtcctattatataaataaggcatattttatgtgcatatttcaccaa
taaagtacatattatgttacacaattcataatattatagaataaatcatc
tatatgatgtatattctgtaatatatctattatatctaatgataactgca
agtataaaccaataggattatttgtatctatatagtagagactacatgtt
atataatacctgtattaggtaaatgtacattttaatattttttattcttg
agaatttaatacacggtataataaaatcatatccacctcccatttccttc
ttccaactattgctatatctcttcaacatgctctcctcccaacttcacgt
cattgttttttttttgaaggccactaagttcatttagtgctacccccatg
tgcacagttgtggggccatgtactggagcatgggaagcctacttatggga
acaccttcaagaaagaatatatttccctcccccaaaagctttctgttgcc
aacagctcctcagtaaagtatagggcctggaaaccatgtctcccatctgt
accaagattttgactgtcttgatcctgtacaggtctgctgtggataacca
ctgctatgtgacttcatgagtgtgtagccatgtcatgttcaggagacagc
acttcatagcaattttccccatcctctggctcatatacactgtttgtttc
ctttccccggatattctcgagtcttggctgggaaagggagtgaaaaacaa
attctagttaagactttgcacttcgcctcttattctcagcactgtgggcc
aattatgcatatctgtatcgactgctactcaatgtcaa
gaattctgaactcctgaagttcctcacgcaacttgtaagcaactacacaa
agagtctccccatgcctagaaattacccacagcttgcatcgcccaggaca
ggaacatctaatctcagggaggagacctgaaagtcttgcaagtttcctga
gccttgtgagtctgtgagttcttgtgaattttatatgcatccccccccaa
aattccccagaggggagcagctgtagcaagtggcatatagaaaggggagg
ggagagatgtgggctaatgacagaacacagtcatgctcccctcccctgga
gcttttacagagatcttagagttcctctttggaatggagaaaacaataca
gggtcctccaaaagaaggcgcggtcctccagggaaagttggcctcatgac
tcctccccatcttccccgcagtgatcagcatgtaccttctcaaagaacag
caaggtagagtttgccctgagccaaacgattctatcctgttggtgcttag
gccctcagaagctgtggtttcaatgtctgaactttctctgggaaaataag
gcagccagaggaacacacaacaaggagcaaataaaataggagacgcgaca
acttgaggaccacgtgacctgaatcacagctaaataggaagcatggagca
gagagatgagtaatggcctgccaacctccactcaactcgaggccagcaca
tggaactgagatcttataaacgatcgggacagagatttcacagaattggg
gataaaagagcatggccttgccaggcccctgggacacttcaggctaacag
gtttgtaaacagaagctgttgaatttccatcagtggggagtgggctgtga
actggactatggggtggggagcaacagttttcaagaaatttccaaaagat
ctacatatgacctcactccattcccaccctacagtcctccccatccccca
aattaataaacctttctctgttctcttcttctgctttaaagcataatcat
cggcacagttgtcttcatttaactggagggctaccaagaaagccttaaat
tggggacttcgttcagttgctgatgacttaccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_105120083_105120966
seq2: B6Ng01-314I10.b_48_931

seq1  GAATTCTCTGGCTGGATACAAGTCTCTTCTGATACAAGGAAACATAGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGCTGGATACAAGTCTCTTCTGATACAAGGAAACATAGCCT  50

seq1  GGACTCTCCAGAGAAGTGTAACCAATGGGAGAGGTAGTATTTATTTATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCTCCAGAGAAGTGTAACCAATGGGAGAGGTAGTATTTATTTATAT  100

seq1  ATTTTTATATAATATTGTTATGTTACATATATTATCTGCACTATGCAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATATAATATTGTTATGTTACATATATTATCTGCACTATGCAATA  150

seq1  GCAAGTCCTATTATATAAATAAGGCATATTTTATGTGCATATTTCACCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTCCTATTATATAAATAAGGCATATTTTATGTGCATATTTCACCAA  200

seq1  TAAAGTACATATTATGTTACACAATTCATAATATTATAGAATAAATCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTACATATTATGTTACACAATTCATAATATTATAGAATAAATCATC  250

seq1  TATATGATGTATATTCTGTAATATATCTATTATATCTAATGATAACTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGATGTATATTCTGTAATATATCTATTATATCTAATGATAACTGCA  300

seq1  AGTATAAACCAATAGGATTATTTGTATCTATATAGTAGAGACTACATGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAAACCAATAGGATTATTTGTATCTATATAGTAGAGACTACATGTT  350

seq1  ATATAATACCTGTATTAGGTAAATGTACATTTTAATATTTTTTATTCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATACCTGTATTAGGTAAATGTACATTTTAATATTTTTTATTCTTG  400

seq1  AGAATTTAATACACGGTATAATAAAATCATATCCACCTCCCATTTCCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTAATACACGGTATAATAAAATCATATCCACCTCCCATTTCCTTC  450

seq1  TTCCAACTATTGCTATATCTCTTCAACATGCTCTCCTCCCAACTTCACGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAACTATTGCTATATCTCTTCAACATGCTCTCCTCCCAACTTCACGT  500

seq1  CATTGTTTTTTTTTTGAAGGCCACTAAGTTCATTTAGTGCTACCCCCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTTTTTTTTTGAAGGCCACTAAGTTCATTTAGTGCTACCCCCATG  550

seq1  TGCACAGTTGTGGGGCCATGTACTGGAGCATGGGAAGCCTACTTATGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGTTGTGGGGCCATGTACTGGAGCATGGGAAGCCTACTTATGGGA  600

seq1  ACACCTTCAAGAAAGAATATATTTCCCTCCCCCAAAAGCTTTCTGTTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTCAAGAAAGAATATATTTCCCTCCCCCAAAAGCTTTCTGTTGCC  650

seq1  AACAGCTCCTCAGTAAAGTATAGGGCCTGGAAACCATGTCTCCCATCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCTCCTCAGTAAAGTATAGGGCCTGGAAACCATGTCTCCCATCTGT  700

seq1  ACCAAGATTTTGACTGTCTTGATCCTGTACAGGTCTGCTGTGGATAACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGATTTTGACTGTCTTGATCCTGTACAGGTCTGCTGTGGATAACCA  750

seq1  CTGCTATGTGACTTCATGAGTGTGTAGCCATGTCATGTTCAGGAGACAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTATGTGACTTCATGAGTGTGTAGCCATGTCATGTTCAGGAGACAGC  800

seq1  ACTTCATAGCAATTTTCCCCATCCTCTGGCTCATATACACTGTTTGTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCATAGCAATTTTCCCCATCCTCTGGCTCATATACACTGTTTGTTTC  850

seq1  CTTTCCCCGGATATTCTCGAGTCTTGGCTGGGAA  884
      ||||||||||||||||||||||||||||||||||
seq2  CTTTCCCCGGATATTCTCGAGTCTTGGCTGGGAA  884

seq1: chr3_105228809_105229873
seq2: B6Ng01-314I10.g_66_1148 (reverse)

seq1  GGGTAAGTCATCAGCAACTGAACGAAGT-CCCAATTTA--GCTTTCTTTT  47
      |||||||||||||||||||||||||||| |||||||||  ||||||  ||
seq2  GGGTAAGTCATCAGCAACTGAACGAAGTCCCCAATTTAAGGCTTTC--TT  48

seq1  GGTAG-CCTCCAG-TAAATG-AGAC-ACTGTG-CGATGA-TATGCTTTAA  91
      ||||| ||||||| |||||| |||| |||||| |||||| ||||||||||
seq2  GGTAGCCCTCCAGTTAAATGAAGACAACTGTGCCGATGATTATGCTTTAA  98

seq1  GGCAG-AGAAGAGAACAGAG-AAGGTTTATTTAATTGGGGGAT-GGGAGG  138
       |||| |||||||||||||| |||||||||| | ||||||||| ||||||
seq2  AGCAGAAGAAGAGAACAGAGAAAGGTTTATTAATTTGGGGGATGGGGAGG  148

seq1  ACTGTAGGGTGGGAAATGGAGTGAGGGTCATATGTAGATC-TTTGGAAAT  187
      ||||||||||||| |||||||||| ||||||||||||||| |||||||||
seq2  ACTGTAGGGTGGG-AATGGAGTGA-GGTCATATGTAGATCTTTTGGAAAT  196

seq1  T--CTGAAAACTGTTGCTCCC--ACCCATAGTCCAGTTCACAG-CCACT-  231
      |   |||||||||||||||||   ||||||||||||||||||| ||||| 
seq2  TTCTTGAAAACTGTTGCTCCCCACCCCATAGTCCAGTTCACAGCCCACTC  246

seq1  CCCACTGATGGAAATTCAACAGCTTCTGTTTAC-AACCTGTTAGCCTGAA  280
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CCCACTGATGGAAATTCAACAGCTTCTGTTTACAAACCTGTTAGCCTGAA  296

seq1  GTGT-CCAGGGGCCTGGCAAGGCCATGCTCTTTTAT-CCCAATTCTGTGA  328
      |||| ||||||||||||||||||||||||||||||| |||||||||||||
seq2  GTGTCCCAGGGGCCTGGCAAGGCCATGCTCTTTTATCCCCAATTCTGTGA  346

seq1  AATCTCTGTCCCGATCGTTTATAAGATCTCAGTTCCATGTGCTGGCCTCG  378
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTGTCCCGATCGTTTATAAGATCTCAGTTCCATGTGCTGGCCTCG  396

seq1  AGTTGAGTGGAGGTTGGCAGGCCATTACTCATCTCTCTGCTCCATGCTTC  428
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAGTGGAGGTTGGCAGGCCATTACTCATCTCTCTGCTCCATGCTTC  446

seq1  CTATTTAGCTGTGATTCAGGTCACGTGGTCCTCAAGTTGTCGCGTCTCCT  478
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTAGCTGTGATTCAGGTCACGTGGTCCTCAAGTTGTCGCGTCTCCT  496

seq1  ATTTTATTTGCTCCTTGTTGTGTGTTCCTCTGGCTGCCTTATTTTCCCAG  528
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTTGCTCCTTGTTGTGTGTTCCTCTGGCTGCCTTATTTTCCCAG  546

seq1  AGAAAGTTCAGACATTGAAACCACAGCTTCTGAGGGCCTAAGCACCAACA  578
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTTCAGACATTGAAACCACAGCTTCTGAGGGCCTAAGCACCAACA  596

seq1  GGATAGAATCGTTTGGCTCAGGGCAAACTCTACCTTGCTGTTCTTTGAGA  628
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGAATCGTTTGGCTCAGGGCAAACTCTACCTTGCTGTTCTTTGAGA  646

seq1  AGGTACATGCTGATCACTGCGGGGAAGATGGGGAGGAGTCATGAGGCCAA  678
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACATGCTGATCACTGCGGGGAAGATGGGGAGGAGTCATGAGGCCAA  696

seq1  CTTTCCCTGGAGGACCGCGCCTTCTTTTGGAGGACCCTGTATTGTTTTCT  728
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCTGGAGGACCGCGCCTTCTTTTGGAGGACCCTGTATTGTTTTCT  746

seq1  CCATTCCAAAGAGGAACTCTAAGATCTCTGTAAAAGCTCCAGGGGAGGGG  778
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCCAAAGAGGAACTCTAAGATCTCTGTAAAAGCTCCAGGGGAGGGG  796

seq1  AGCATGACTGTGTTCTGTCATTAGCCCACATCTCTCCCCTCCCCTTTCTA  828
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGACTGTGTTCTGTCATTAGCCCACATCTCTCCCCTCCCCTTTCTA  846

seq1  TATGCCACTTGCTACAGCTGCTCCCCTCTGGGGAATTTTGGGGGGGGATG  878
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCACTTGCTACAGCTGCTCCCCTCTGGGGAATTTTGGGGGGGGATG  896

seq1  CATATAAAATTCACAAGAACTCACAGACTCACAAGGCTCAGGAAACTTGC  928
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAAAATTCACAAGAACTCACAGACTCACAAGGCTCAGGAAACTTGC  946

seq1  AAGACTTTCAGGTCTCCTCCCTGAGATTAGATGTTCCTGTCCTGGGCGAT  978
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTTTCAGGTCTCCTCCCTGAGATTAGATGTTCCTGTCCTGGGCGAT  996

seq1  GCAAGCTGTGGGTAATTTCTAGGCATGGGGAGACTCTTTGTGTAGTTGCT  1028
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCTGTGGGTAATTTCTAGGCATGGGGAGACTCTTTGTGTAGTTGCT  1046

seq1  TACAAGTTGCGTGAGGAACTTCAGGAGTTCAGAATTC  1065
      |||||||||||||||||||||||||||||||||||||
seq2  TACAAGTTGCGTGAGGAACTTCAGGAGTTCAGAATTC  1083