BAC Information

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BAC

Clone NameB6Ng01-314N01
Chromosome3 (Build37)
Map Location 81,743,640 - 81,900,691
singlet/doubletdoublet
Overlap geneCtso, Tdo2, Accn5, Gucy1b3, Gucy1a3
Upstream geneEG626841, Pdgfc, LOC229443, LOC100041901
Downstream geneMtap9, Npy2r, LOC100041940, EG633285, Lrat, Fgg, Fga, Fgb, Plrg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-314N01.bB6Ng01-314N01.g
ACCGA105633GA105634
length1,1011,056
definitionB6Ng01-314N01.b B6Ng01-314N01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,899,587 - 81,900,691)(81,743,640 - 81,744,674)
sequence
gaattctgtaactcaggacatttctcagggtttgagggtcaccccctgaa
accaaggacaaggggtaaactccctgtttcagaacagtaggaacaaggaa
ggctcagcagacaaaactgtcagatcattaaatggtttagtctgtattct
tgaggaccaacaatggtgacatcataacacaggaactgtaaacttcatct
aggaacacgaagacctcttagggtgtgaggtggcacaggcctgaaattcc
agctacttcggaggctgagacaggacaagatcaagttcaaggcttgtttg
gatacagtgaattcaaagcgagcctgggaaatttatgacaccctgtctca
aaatgaaaacataaagggggatagaggaggcggaggctgaagagatggct
ccgcaattaagagctgttgctgcttccagaggactcagatttagtactta
gcatcccacatagtagcttatagcctttctaaattacagttccatacgtt
ccaggatctttttctggcctctgtaggcaccaggcatatacacaacacag
tatacatgtggaaaaaacactcatacacataaaacacaaataaataaacc
ttttttaaaatgttaaagaagtactggagacatagctcagtgttaaagga
ctaacctagcatgcatgagtccttaagttcaatctccagtagggtgaaaa
acaaaaacaaaaatgaacaagaaagaaaaagaatccaaaaacaaaataac
aacagccacgaatgcaggcctctctttctgtacatttgaaaatgtacagc
tgtcaacctgagccaaccacttcctgtactgtggtaacactttccacatt
tagccagaaaataagcagccattccacatccacagactttcatttactcc
gcaaattttgtcttattaaaaaaaaaattaatggaaacccccaagtaaca
gaaactattctagatgcctacagatcacagagtatcatactatctagtct
cttgaaaaatataaaatctgctatgtcagtctgctgtccttttaatattt
agtctgttacacaaatggtgcaccaaatagtagaatgttcacatgagcaa
t
gaattcatcatcgaagccatctggaactagtgttttctttctgggtcagt
tttctatcacaattgtaaggctgtgagctgataaaggttcgtgttttcgg
tttcgttcatgtttagtaatctgcttcttaagcggttttcccatttcata
caagttgtaaaatttattggccaaaataattagtttccaaatgccagaag
catggtaatcattgggcttttcctgcccaatatggtcatttatgtgttgt
tttcacacttaacctcatcctaggtacatacctatgagagaacatggaga
accaggatccgctgttcactgcagcctaacactgaccttgaatgagagag
agaaacagagagagttgtgacataagccctgggttttttgtttgtttgtt
tgtttgtttgttgggggagttgctgtttttcttttctgtgtaggtcacca
agtggctgtaatttaatagcaatctatcagaagactctctgtgtctgccc
tatatagccaaccttagtactcaggcatcagctgtttgccaccatggcaa
ctgcagcttcctgcagtgggttcctgacaattcagccaccagcagctcaa
cgcccagagatggaggtttgccacccaggttctcatggctgcgtgtggtc
atggctaccaagtgttccaaatatccggcattctctattcctgccctgtt
ttaccttgcttaggaaagtaaattaaccatcttatgaaatgtttcctgta
cattcctttgcagccacccctcggcggcctgtgttaccactcttgttatg
caaaattaacttctaaatttagttttattttttggttgtatatctgttgg
ttacatccaaagcattgccttcttcaaggagcaagttcctgaaactcaaa
ggactttctaaaatttcactggtttagcagtccttcttaggtacaattca
gttaagagagtattaagcaaggactctgctgagtcttcagcttgtgtgat
ccttgcctggaaaccaaactgatgaagggatatttaagaggaagacccct
atgaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_81899587_81900691
seq2: B6Ng01-314N01.b_46_1146 (reverse)

seq1  ATTGCTCATGTGACCA-TCTACTATTTGGTGCA-CATTTGTGTAACAGGA  48
      ||||||||||||| || |||||||||||||||| ||||||||||||| ||
seq2  ATTGCTCATGTGAACATTCTACTATTTGGTGCACCATTTGTGTAACA-GA  49

seq1  CTTAAATA-TAAAGGGACAGCAAGACTTGACAATAAGCAAGATTTTATA-  96
      | |||||| |||| ||||||| |||| |||||   ||| |||||||||| 
seq2  C-TAAATATTAAAAGGACAGC-AGAC-TGACA--TAGC-AGATTTTATAT  93

seq1  TTTTCAAGAGACTAGATAGTATGATACTCTTGTGATCTGTAGGCATCTAG  146
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTTTCAAGAGACTAGATAGTATGATACTC-TGTGATCTGTAGGCATCTAG  142

seq1  AATAGTTTCTGTTACTTGGGGGTTTCCATTAATTTTTTTTTTAATAAGAC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTTTCTGTTACTTGGGGGTTTCCATTAATTTTTTTTTTAATAAGAC  192

seq1  AAAATTTGCGGAGTAAATGAAAGTCTGTGGATGTGGAATGGCTGCTTATT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTGCGGAGTAAATGAAAGTCTGTGGATGTGGAATGGCTGCTTATT  242

seq1  TTCTGGCTAAATGTGGAAAGTGTTACCACAGTACAGGAAGTGGTTGGCTC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGCTAAATGTGGAAAGTGTTACCACAGTACAGGAAGTGGTTGGCTC  292

seq1  AGGTTGACAGCTGTACATTTTCAAATGTACAGAAAGAGAGGCCTGCATTC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGACAGCTGTACATTTTCAAATGTACAGAAAGAGAGGCCTGCATTC  342

seq1  GTGGCTGTTGTTATTTTGTTTTTGGATTCTTTTTCTTTCTTGTTCATTTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTGTTGTTATTTTGTTTTTGGATTCTTTTTCTTTCTTGTTCATTTT  392

seq1  TGTTTTTGTTTTTCACCCTACTGGAGATTGAACTTAAGGACTCATGCATG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTGTTTTTCACCCTACTGGAGATTGAACTTAAGGACTCATGCATG  442

seq1  CTAGGTTAGTCCTTTAACACTGAGCTATGTCTCCAGTACTTCTTTAACAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTTAGTCCTTTAACACTGAGCTATGTCTCCAGTACTTCTTTAACAT  492

seq1  TTTAAAAAAGGTTTATTTATTTGTGTTTTATGTGTATGAGTGTTTTTTCC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAAGGTTTATTTATTTGTGTTTTATGTGTATGAGTGTTTTTTCC  542

seq1  ACATGTATACTGTGTTGTGTATATGCCTGGTGCCTACAGAGGCCAGAAAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTATACTGTGTTGTGTATATGCCTGGTGCCTACAGAGGCCAGAAAA  592

seq1  AGATCCTGGAACGTATGGAACTGTAATTTAGAAAGGCTATAAGCTACTAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCTGGAACGTATGGAACTGTAATTTAGAAAGGCTATAAGCTACTAT  642

seq1  GTGGGATGCTAAGTACTAAATCTGAGTCCTCTGGAAGCAGCAACAGCTCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGATGCTAAGTACTAAATCTGAGTCCTCTGGAAGCAGCAACAGCTCT  692

seq1  TAATTGCGGAGCCATCTCTTCAGCCTCCGCCTCCTCTATCCCCCTTTATG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGCGGAGCCATCTCTTCAGCCTCCGCCTCCTCTATCCCCCTTTATG  742

seq1  TTTTCATTTTGAGACAGGGTGTCATAAATTTCCCAGGCTCGCTTTGAATT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTTTGAGACAGGGTGTCATAAATTTCCCAGGCTCGCTTTGAATT  792

seq1  CACTGTATCCAAACAAGCCTTGAACTTGATCTTGTCCTGTCTCAGCCTCC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTATCCAAACAAGCCTTGAACTTGATCTTGTCCTGTCTCAGCCTCC  842

seq1  GAAGTAGCTGGAATTTCAGGCCTGTGCCACCTCACACCCTAAGAGGTCTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAGCTGGAATTTCAGGCCTGTGCCACCTCACACCCTAAGAGGTCTT  892

seq1  CGTGTTCCTAGATGAAGTTTACAGTTCCTGTGTTATGATGTCACCATTGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTTCCTAGATGAAGTTTACAGTTCCTGTGTTATGATGTCACCATTGT  942

seq1  TGGTCCTCAAGAATACAGACTAAACCATTTAATGATCTGACAGTTTTGTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCTCAAGAATACAGACTAAACCATTTAATGATCTGACAGTTTTGTC  992

seq1  TGCTGAGCCTTCCTTGTTCCTACTGTTCTGAAACAGGGAGTTTACCCCTT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGCCTTCCTTGTTCCTACTGTTCTGAAACAGGGAGTTTACCCCTT  1042

seq1  GTCCTTGGTTTCAGGGGGTGACCCTCAAACCCTGAGAAATGTCCTGAGTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTGGTTTCAGGGGGTGACCCTCAAACCCTGAGAAATGTCCTGAGTT  1092

seq1  ACAGAATTC  1105
      |||||||||
seq2  ACAGAATTC  1101

seq1: chr3_81743640_81744674
seq2: B6Ng01-314N01.g_65_1120

seq1  GAATTCATCATCGAAGCCATCTGGAACTAGTGTTTTCTTTCTGGGTCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCATCGAAGCCATCTGGAACTAGTGTTTTCTTTCTGGGTCAGT  50

seq1  TTTCTATCACAATTGTAAGGCTGTGAGCTGATAAAGGTTCGTGTTTTCGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATCACAATTGTAAGGCTGTGAGCTGATAAAGGTTCGTGTTTTCGG  100

seq1  TTTCGTTCATGTTTAGTAATCTGCTTCTTAAGCGGTTTTCCCATTTCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGTTCATGTTTAGTAATCTGCTTCTTAAGCGGTTTTCCCATTTCATA  150

seq1  CAAGTTGTAAAATTTATTGGCCAAAATAATTAGTTTCCAAATGCCAGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTGTAAAATTTATTGGCCAAAATAATTAGTTTCCAAATGCCAGAAG  200

seq1  CATGGTAATCATTGGGCTTTTCCTGCCCAATATGGTCATTTATGTGTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTAATCATTGGGCTTTTCCTGCCCAATATGGTCATTTATGTGTTGT  250

seq1  TTTCACACTTAACCTCATCCTAGGTACATACCTATGAGAGAACATGGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACACTTAACCTCATCCTAGGTACATACCTATGAGAGAACATGGAGA  300

seq1  ACCAGGATCCGCTGTTCACTGCAGCCTAACACTGACCTTGAATGAGAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGATCCGCTGTTCACTGCAGCCTAACACTGACCTTGAATGAGAGAG  350

seq1  AGAAACAGAGAGAGTTGTGACATAAGCCCTGGGTTTTTTGTTTGTTTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAGAGAGAGTTGTGACATAAGCCCTGGGTTTTTTGTTTGTTTGTT  400

seq1  TGTTTGTTTGTTGGGGGAGTTGCTGTTTTTCTTTTCTGTGTAGGTCACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGTTGGGGGAGTTGCTGTTTTTCTTTTCTGTGTAGGTCACCA  450

seq1  AGTGGCTGTAATTTAATAGCAATCTATCAGAAGACTCTCTGTGTCTGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTGTAATTTAATAGCAATCTATCAGAAGACTCTCTGTGTCTGCCC  500

seq1  TATATAGCCAACCTTAGTACTCAGGCATCAGCTGTTTGCCACCATGGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAGCCAACCTTAGTACTCAGGCATCAGCTGTTTGCCACCATGGCAA  550

seq1  CTGCAGCTTCCTGCAGTGGGTTCCTGACAATTCAGCCACCAGCAGCTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGCTTCCTGCAGTGGGTTCCTGACAATTCAGCCACCAGCAGCTCAA  600

seq1  CGCCCAGAGATGGAGGTTTGCCACCCAGGTTCTCATGGCTGCGTGTGGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCAGAGATGGAGGTTTGCCACCCAGGTTCTCATGGCTGCGTGTGGTC  650

seq1  ATGGCTACCAAGTGTTCCAAATATCCGGCATTCTCTATTCCTGCCCTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTACCAAGTGTTCCAAATATCCGGCATTCTCTATTCCTGCCCTGTT  700

seq1  TTACCTTGCTTAGGAAAGTAAATTAACCATCTTATG-AATGTTTCCTGTA  749
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTACCTTGCTTAGGAAAGTAAATTAACCATCTTATGAAATGTTTCCTGTA  750

seq1  CATTCCTTTGCAGCCACCCCTCGGCGGCCTGTGTTACCACTCTTGTTATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTTTGCAGCCACCCCTCGGCGGCCTGTGTTACCACTCTTGTTATG  800

seq1  CAAAATTAACTTCTAAATTTAGTTTTA-TTTTTGGTTGTATATCTGTTGG  848
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CAAAATTAACTTCTAAATTTAGTTTTATTTTTTGGTTGTATATCTGTTGG  850

seq1  TTACATTCAAAGCATTG-CTTC-TCCAGGAGCAAGTTCCTGAAACTCAAA  896
      |||||| |||||||||| |||| || ||||||||||||||||||||| ||
seq2  TTACATCCAAAGCATTGCCTTCTTCAAGGAGCAAGTTCCTGAAACTC-AA  899

seq1  AGGAC-TTCTAAAA-TTCACTGG-TTAGCAGTCCTTC-TAGGTAC-ATTC  941
      ||||| |||||||| |||||||| ||||||||||||| ||||||| ||||
seq2  AGGACTTTCTAAAATTTCACTGGTTTAGCAGTCCTTCTTAGGTACAATTC  949

seq1  AGTT-AGAGAGAATTAAGCAA-GACCCTGCTGAGTC-TCAGC---TGTGA  985
      |||| |||||| ||||||||| ||| |||||||||| |||||   |||||
seq2  AGTTAAGAGAGTATTAAGCAAGGACTCTGCTGAGTCTTCAGCTTGTGTGA  999

seq1  T-CTTG-CTGAAAACC-AACTGATGAA-GGATA-TTAAGAGG-AGA-CCC  1028
      | |||| ||| ||||| |||||||||| ||||| |||||||| ||| |||
seq2  TCCTTGCCTGGAAACCAAACTGATGAAGGGATATTTAAGAGGAAGACCCC  1049

seq1  TATGAAA  1035
      |||||||
seq2  TATGAAA  1056