BAC Information

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BAC

Clone NameB6Ng01-315B04
Chromosome3 (Build37)
Map Location 16,777,844 - 16,931,646
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC622425, LOC664795, LOC381484, Ythdf3, LOC100040034
Downstream geneLOC100040059, EG383936, LOC622737, ENSMUSG00000074674, LOC100040120, Cypt12, LOC545508
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-315B04.bB6Ng01-315B04.g
ACCGA105821GA105822
length1,0991,150
definitionB6Ng01-315B04.b B6Ng01-315B04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,930,530 - 16,931,646)(16,777,844 - 16,778,983)
sequence
gaattcaagtgactgagaaataagcccacttgcacggtatgatatttaga
atagcctggagtgtgatactgcaatctcatctgggagtaggctgtatcag
tacatatgctgagagaagggaatataaaatgactcttctacatgtactgt
gctctcgtggcttttacaatacattcacggagctatgtgttcttgtgctg
aaccttagtaatgaatgaaactaaattcaaacgaattgcaagcagaaaaa
ctgttttaacttccatttctgtcatttctaatttgactagcacaggcttg
gatcaataggtatttccatcagcacacacactttcaaggaaagcatacca
aagcaagaagcttaaagcagaaaatgcaattaaaaagttgagatttttta
atgaaaaatttatttacctttaaatatgtatgcatgccaagtgcagtttc
acatggagaaaagaggggaaagttggatgctcagcagccagctttactaa
aagttgtgtgcagcctagtaatggtgctaggagctgagataagaattctg
gaagaggaacatgttctcttagctgctcagttttatttttattctctaaa
atcaagctttatataatgcttttgttaacaacatcagtacatccatcttt
ccatctattagtttattccttcaagaattattgatggagtatatactaga
ctgtaaagattacctaactttttatagttgactgtgaaaaacatgtttct
tgttctcatgaaatatttataaatatcacatatcctcaaaacatttgttt
gagaatttctgaattatatttcaattattgtcaatttaaaaaaaaaaaac
cttaaagatctccagggtctgtgcactgcaccattttaaggagacacaat
gttagtaagtctctgaacttattacgcctgacctcacatgtaggcattag
attcaaccatagctgaaagcactgggaaatcacgagagtttggaacaaac
tatgtctctgtgcttcagtacttgaagtgaaattattaagcaaaaccaga
catgataatgttgtcactatgaagttagatacgaaattaaaatatctaa

gaattcaacgtttctagttacttttacaaactttctttaaaagtggacgc
ctgcttttccctcagaaagttgcatacagtgcatttgaccatgttcaccc
tgccttcacagatcctccatgttcaccctgccttcacagatcctccatgt
tcaccctgccttcacaaatcctccatgttcaccctgccttcacagatgtt
ccatgttcaccctgccttcacagatgttccatgttcaccctgcctttaca
gatgttccatgttcaccctgcctttacagatgttccatgttcaccctgcc
tttacagatgttccatgttcaccctgcctttacagatgttccatgctcac
cctgcctttacagatgttccatgttcaccctgcctttacagaccctccat
gttcgccctgcctttacagatgttccatgttcaccctgcctttacagatg
ttccatattcaccctgcctttacagatgttccatgttcaccctgccttta
cagatgttccatgttcaccctgcctttacagatgttccatgttcaccctg
cctttacagatgttccatgttcaccctgcctttacagatgttccatgttc
accctcccttcacagatcctccatgttcaccctcccttcacagaccctcc
atgttcaccctgtcttcacagatcctccatgttagccctgtcttcacaga
tcctccatgttagccctgcctttacagatcctccatgttcaccctgcctt
cacaaatcctccatgttcaccttgcctttacaaatgccctttcacccctc
cctcttttcctatcttctctatctacacaactttttggggggttgtttgt
ttttgttttgttttgtttttgctaaacttgtttatcaacttaatgtaatt
ttaatacccattacccactaccaaaggctcagtgacaccaaatgcatgag
tttctctagatgacagagtgaaagtatcatcccagaatcgtagactaaaa
cattttaggccctgaaaaaaaaaaaaagtgctgggtttaagttccaattt
tccctcaattttccatagaaatggaggattttaagaataattgaagtagg
ctccatatataagttgaagtgcagcctaggaactggcctaaatattctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_16930530_16931646
seq2: B6Ng01-315B04.b_48_1146 (reverse)

seq1  TTAGATATTTTTATTTTTCTGTATCTAAACCTCATTAGGTTGACAACATT  50
      ||||||||||| ||||    |||||| ||| ||| |||  ||||||||||
seq2  TTAGATATTTTAATTT---CGTATCT-AACTTCA-TAG--TGACAACATT  43

seq1  AATCATTGTTCTGGGTTTTTTGCCTAATAATTTTTAACTTCAAAGTACTG  100
       |||||   |||||   |||||| ||||||  ||| ||||| ||||||||
seq2  -ATCAT--GTCTGG---TTTTGCTTAATAA--TTTCACTTC-AAGTACTG  84

seq1  AAGCAACAGAGACATAGTTTGTTCCAAACTCTCGTTGAATTTCCAGTGCT  150
      |||| ||||||||||||||||||||||||||||| ||| || ||||||||
seq2  AAGC-ACAGAGACATAGTTTGTTCCAAACTCTCG-TGATTTCCCAGTGCT  132

seq1  TTCAGCTATGGTTGAATCTAATGCCTACATGTGAGGTCAGGCGTAATAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTATGGTTGAATCTAATGCCTACATGTGAGGTCAGGCGTAATAAG  182

seq1  TTCAGAGACTTACTAACATTGTGTCTCCTTAAAATGGTGCAGTGCACAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGACTTACTAACATTGTGTCTCCTTAAAATGGTGCAGTGCACAGA  232

seq1  CCCTGGAGATCTTTAAGGTTTTTTTTTTTTAAATTGACAATAATTGAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGAGATCTTTAAGGTTTTTTTTTTTTAAATTGACAATAATTGAAAT  282

seq1  ATAATTCAGAAATTCTCAAACAAATGTTTTGAGGATATGTGATATTTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTCAGAAATTCTCAAACAAATGTTTTGAGGATATGTGATATTTATA  332

seq1  AATATTTCATGAGAACAAGAAACATGTTTTTCACAGTCAACTATAAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTCATGAGAACAAGAAACATGTTTTTCACAGTCAACTATAAAAAG  382

seq1  TTAGGTAATCTTTACAGTCTAGTATATACTCCATCAATAATTCTTGAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTAATCTTTACAGTCTAGTATATACTCCATCAATAATTCTTGAAGG  432

seq1  AATAAACTAATAGATGGAAAGATGGATGTACTGATGTTGTTAACAAAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACTAATAGATGGAAAGATGGATGTACTGATGTTGTTAACAAAAGC  482

seq1  ATTATATAAAGCTTGATTTTAGAGAATAAAAATAAAACTGAGCAGCTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATAAAGCTTGATTTTAGAGAATAAAAATAAAACTGAGCAGCTAAG  532

seq1  AGAACATGTTCCTCTTCCAGAATTCTTATCTCAGCTCCTAGCACCATTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATGTTCCTCTTCCAGAATTCTTATCTCAGCTCCTAGCACCATTAC  582

seq1  TAGGCTGCACACAACTTTTAGTAAAGCTGGCTGCTGAGCATCCAACTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTGCACACAACTTTTAGTAAAGCTGGCTGCTGAGCATCCAACTTTC  632

seq1  CCCTCTTTTCTCCATGTGAAACTGCACTTGGCATGCATACATATTTAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTTTCTCCATGTGAAACTGCACTTGGCATGCATACATATTTAAAG  682

seq1  GTAAATAAATTTTTCATTAAAAAATCTCAACTTTTTAATTGCATTTTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATAAATTTTTCATTAAAAAATCTCAACTTTTTAATTGCATTTTCTG  732

seq1  CTTTAAGCTTCTTGCTTTGGTATGCTTTCCTTGAAAGTGTGTGTGCTGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAGCTTCTTGCTTTGGTATGCTTTCCTTGAAAGTGTGTGTGCTGAT  782

seq1  GGAAATACCTATTGATCCAAGCCTGTGCTAGTCAAATTAGAAATGACAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATACCTATTGATCCAAGCCTGTGCTAGTCAAATTAGAAATGACAGA  832

seq1  AATGGAAGTTAAAACAGTTTTTCTGCTTGCAATTCGTTTGAATTTAGTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAGTTAAAACAGTTTTTCTGCTTGCAATTCGTTTGAATTTAGTTT  882

seq1  CATTCATTACTAAGGTTCAGCACAAGAACACATAGCTCCGTGAATGTATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATTACTAAGGTTCAGCACAAGAACACATAGCTCCGTGAATGTATT  932

seq1  GTAAAAGCCACGAGAGCACAGTACATGTAGAAGAGTCATTTTATATTCCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAGCCACGAGAGCACAGTACATGTAGAAGAGTCATTTTATATTCCC  982

seq1  TTCTCTCAGCATATGTACTGATACAGCCTACTCCCAGATGAGATTGCAGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCAGCATATGTACTGATACAGCCTACTCCCAGATGAGATTGCAGT  1032

seq1  ATCACACTCCAGGCTATTCTAAATATCATACCGTGCAAGTGGGCTTATTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACACTCCAGGCTATTCTAAATATCATACCGTGCAAGTGGGCTTATTT  1082

seq1  CTCAGTCACTTGAATTC  1117
      |||||||||||||||||
seq2  CTCAGTCACTTGAATTC  1099


seq1: chr3_16777844_16778983
seq2: B6Ng01-315B04.g_69_1218

seq1  GAATTCAACGTTTCTAGTTACTTTTACAAACTTTCTTTAAAAGTGGACGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACGTTTCTAGTTACTTTTACAAACTTTCTTTAAAAGTGGACGC  50

seq1  CTGCTTTTCCCTCAGAAAGTTGCATACAGTGCATTTGACCATGTTCACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTTCCCTCAGAAAGTTGCATACAGTGCATTTGACCATGTTCACCC  100

seq1  TGCCTTCACAGATCCTCCATGTTCACCCTGCCTTCACAGATCCTCCATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCACAGATCCTCCATGTTCACCCTGCCTTCACAGATCCTCCATGT  150

seq1  TCACCCTGCCTTCACAAATCCTCCATGTTCACCCTGCCTTCACAGATGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCTGCCTTCACAAATCCTCCATGTTCACCCTGCCTTCACAGATGTT  200

seq1  CCATGTTCACCCTGCCTTCACAGATGTTCCATGTTCACCCTGCCTTTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTTCACCCTGCCTTCACAGATGTTCCATGTTCACCCTGCCTTTACA  250

seq1  GATGTTCCATGTTCACCCTGCCTTTACAGATGTTCCATGTTCACCCTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTCCATGTTCACCCTGCCTTTACAGATGTTCCATGTTCACCCTGCC  300

seq1  TTTACAGATGTTCCATGTTCACCCTGCCTTTACAGATGTTCCATGCTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGATGTTCCATGTTCACCCTGCCTTTACAGATGTTCCATGCTCAC  350

seq1  CCTGCCTTTACAGATGTTCCATGTTCACCCTGCCTTTACAGACCCTCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTTTACAGATGTTCCATGTTCACCCTGCCTTTACAGACCCTCCAT  400

seq1  GTTCGCCCTGCCTTTACAGATGTTCCATGTTCACCCTGCCTTTACAGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGCCCTGCCTTTACAGATGTTCCATGTTCACCCTGCCTTTACAGATG  450

seq1  TTCCATATTCACCCTGCCTTTACAGATGTTCCATGTTCACCCTGCCTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATATTCACCCTGCCTTTACAGATGTTCCATGTTCACCCTGCCTTTA  500

seq1  CAGATGTTCCATGTTCACCCTGCCTTTACAGATGTTCCATGTTCACCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGTTCCATGTTCACCCTGCCTTTACAGATGTTCCATGTTCACCCTG  550

seq1  CCTTTACAGATGTTCCATGTTCACCCTGCCTTTACAGATGTTCCATGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTACAGATGTTCCATGTTCACCCTGCCTTTACAGATGTTCCATGTTC  600

seq1  ACCCTCCCTTCACAGATCCTCCATGTTCACCCTCCCTTCACAGACCCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCCCTTCACAGATCCTCCATGTTCACCCTCCCTTCACAGACCCTCC  650

seq1  ATGTTCACCCTGTCTTCACAGATCCTCCATGTTAGCCCTGTCTTCACAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCACCCTGTCTTCACAGATCCTCCATGTTAGCCCTGTCTTCACAGA  700

seq1  TCCTCCATGTTAGCCCTGCCTTTACAGATCCTCCATGTTCACCCTGCCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCATGTTAGCCCTGCCTTTACAGATCCTCCATGTTCACCCTGCCTT  750

seq1  CACAAATCCTCCATGTTCACCTTGCCTTTACAAATGCCCTTTCACCCCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATCCTCCATGTTCACCTTGCCTTTACAAATGCCCTTTCACCCCTC  800

seq1  CCTCTTTTCCTATCTTCTCTATCTACACAACTTTTTGGGGGGTTGTTTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTTCCTATCTTCTCTATCTACACAACTTTTTGGGGGGTTGTTTGT  850

seq1  TTTTGTTTTGTTTTGTTTTTGCTAAACTTGTTTATCAACTTAAATGTAAT  900
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTTTGTTTTGTTTTGTTTTTGCTAAACTTGTTTATCAACTT-AATGTAAT  899

seq1  TTTAATACCCATTACCCACTACCAAAGGCTCAGTGACACCAAATGCATGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATACCCATTACCCACTACCAAAGGCTCAGTGACACCAAATGCATGA  949

seq1  GTTTCTCTAGATGACAGAGTGAAAGTATCATCCAAG-ATCGTAGACTAAA  999
      ||||||||||||||||||||||||||||||||| || |||||||||||||
seq2  GTTTCTCTAGATGACAGAGTGAAAGTATCATCCCAGAATCGTAGACTAAA  999

seq1  ACAATTTAGG-CCTG---AGAAAAAAAAGTGCTGGG-TTAAGTCCCA--T  1042
      ||| |||||| ||||   | |||||||||||||||| |||||| |||  |
seq2  ACATTTTAGGCCCTGAAAAAAAAAAAAAGTGCTGGGTTTAAGTTCCAATT  1049

seq1  TTCCC-CA--TTTTCACAGAAATTGAGGGAATCTAAGATAATTTAAAGTA  1089
      ||||| ||  ||| || |||||| || ||| | |||||  | || |||||
seq2  TTCCCTCAATTTTCCATAGAAATGGA-GGATTTTAAGAATAATTGAAGTA  1098

seq1  AGCTTCATATATAAGTTGAAATGGCAG-CTAGG-ACTGGCCTAAATATTC  1137
       ||| ||||||||||||||| | |||| ||||| ||||||||||||||||
seq2  GGCTCCATATATAAGTTGAAGT-GCAGCCTAGGAACTGGCCTAAATATTC  1147

seq1  TGG  1140
      |||
seq2  TGG  1150


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