BAC Information

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BAC

Clone NameB6Ng01-315I06
Chromosome3 (Build37)
Map Location 80,457,884 - 80,458,933
singlet/doubletsinglet
Overlap genenone
Upstream geneRxfp1, Tmem144, 1110032E23Rik, EG626797
Downstream geneGria2, Glrb, EG626841, Pdgfc, LOC229443
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-315I06.bB6Ng01-315I06.g
ACCGA106146GA106147
length1,058664
definitionB6Ng01-315I06.b B6Ng01-315I06.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccatgaaaaagttacttcatgaactccaaatctcttaaatcctcc
cttttaatactaccacatacaaaacaaaacataagattttttgacacatt
agaattacagagagagagagagagagagagagagagagagagagtctaca
tgtaagttattctattcccaaaccctgaaaagactttacttactacacca
tcacatttagagtttaactccaaagttccatctgaatatatggttaagaa
tcactgtgattcatcttgaagcaaatttcccttcagctctgtgcctataa
agtcaaatggctgacaggacttcaaaataaagtggtaggacatggatagg
caagtcatacagcataaaaacgaagaagaggcaaatattctatgtcattt
aaaagaacccatcatgcagacagagctaaatctttcactccttgtgccac
catgggacactatgtgtgaggtatggaatgagagaccagaatctggaacc
ctccacttgcaaggctttagggagtccagacacttaactgtatgctttgg
gtgggaccaacctgggtccatcagagcagcagctatagtatccaactgct
gttgcctttgaatgcagtggacagagccagtctcagtcatgaacaccgag
gctcgggaacatctcaggtcattttcctaaaacttttctcctcttccccg
agcctgttctctcaagacattctgagctagtgatagatctggtgatgtcc
tgcccactttggaagacctttagtttgtgttttggtcactttcccattgc
cttaacgaacagcacccatcttccttctatccatattaatcactgtacca
aattgttattggcccatgctcttgattctgactgctacatggcttttgca
cagcttgtctgagaagtttctaaatcttaatcttaatcttatttacctgt
gtacatattagtctataattgtgttactataagaaaaatgctttaaactt
gtataattttataaaggaacagagttgttgtttacttacaggttcagagg
cctaagat
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacactagtgaaaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaacgacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaagaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatatagatacatttcctaaacacatgaaactcaagaa
aaatgaagactgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_80457884_80458933
seq2: B6Ng01-315I06.b_51_1108 (reverse)

seq1  ATCTTA-GCCTCTGAACTTGTAAGTAA--CACACTTCTGTT-CTTTAT-A  45
      |||||| |||||||||| |||||||||   |||  |||||| |||||| |
seq2  ATCTTAGGCCTCTGAACCTGTAAGTAAACAACAACTCTGTTCCTTTATAA  50

seq1  AATTATAC-AGTTTAAAGCA-TTTTCTTATAGTAACACAA-TATAGACTA  92
      |||||||| ||||||||||| ||||||||||||||||||| |||||||||
seq2  AATTATACAAGTTTAAAGCATTTTTCTTATAGTAACACAATTATAGACTA  100

seq1  ATATGTACACAGGTAAATAAGATTAAGATTAAGATTTAGAAACTTCTCAG  142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTACACAGGTAAATAAGATTAAGATTAAGATTTAGAAACTTCTCAG  150

seq1  ACAAGCTGTGCAAAAGCCATGTAGCAGTCAGAATCAAGAGCATGGGCCAA  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCTGTGCAAAAGCCATGTAGCAGTCAGAATCAAGAGCATGGGCCAA  200

seq1  TAACAATTTGGTACAGTGATTAATATGGATAGAAGGAAGATGGGTGCTGT  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAATTTGGTACAGTGATTAATATGGATAGAAGGAAGATGGGTGCTGT  250

seq1  TCGTTAAGGCAATGGGAAAGTGACCAAAACACAAACTAAAGGTCTTCCAA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTAAGGCAATGGGAAAGTGACCAAAACACAAACTAAAGGTCTTCCAA  300

seq1  AGTGGGCAGGACATCACCAGATCTATCACTAGCTCAGAATGTCTTGAGAG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGCAGGACATCACCAGATCTATCACTAGCTCAGAATGTCTTGAGAG  350

seq1  AACAGGCTCGGGGAAGAGGAGAAAAGTTTTAGGAAAATGACCTGAGATGT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGCTCGGGGAAGAGGAGAAAAGTTTTAGGAAAATGACCTGAGATGT  400

seq1  TCCCGAGCCTCGGTGTTCATGACTGAGACTGGCTCTGTCCACTGCATTCA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGAGCCTCGGTGTTCATGACTGAGACTGGCTCTGTCCACTGCATTCA  450

seq1  AAGGCAACAGCAGTTGGATACTATAGCTGCTGCTCTGATGGACCCAGGTT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAACAGCAGTTGGATACTATAGCTGCTGCTCTGATGGACCCAGGTT  500

seq1  GGTCCCACCCAAAGCATACAGTTAAGTGTCTGGACTCCCTAAAGCCTTGC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCACCCAAAGCATACAGTTAAGTGTCTGGACTCCCTAAAGCCTTGC  550

seq1  AAGTGGAGGGTTCCAGATTCTGGTCTCTCATTCCATACCTCACACATAGT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGAGGGTTCCAGATTCTGGTCTCTCATTCCATACCTCACACATAGT  600

seq1  GTCCCATGGTGGCACAAGGAGTGAAAGATTTAGCTCTGTCTGCATGATGG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCATGGTGGCACAAGGAGTGAAAGATTTAGCTCTGTCTGCATGATGG  650

seq1  GTTCTTTTAAATGACATAGAATATTTGCCTCTTCTTCGTTTTTATGCTGT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTTAAATGACATAGAATATTTGCCTCTTCTTCGTTTTTATGCTGT  700

seq1  ATGACTTGCCTATCCATGTCCTACCACTTTATTTTGAAGTCCTGTCAGCC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTTGCCTATCCATGTCCTACCACTTTATTTTGAAGTCCTGTCAGCC  750

seq1  ATTTGACTTTATAGGCACAGAGCTGAAGGGAAATTTGCTTCAAGATGAAT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGACTTTATAGGCACAGAGCTGAAGGGAAATTTGCTTCAAGATGAAT  800

seq1  CACAGTGATTCTTAACCATATATTCAGATGGAACTTTGGAGTTAAACTCT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGATTCTTAACCATATATTCAGATGGAACTTTGGAGTTAAACTCT  850

seq1  AAATGTGATGGTGTAGTAAGTAAAGTCTTTTCAGGGTTTGGGAATAGAAT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGATGGTGTAGTAAGTAAAGTCTTTTCAGGGTTTGGGAATAGAAT  900

seq1  AACTTACATGTAGACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTACATGTAGACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  950

seq1  GTAATTCTAATGTGTCAAAAAATCTTATGTTTTGTTTTGTATGTGGTAGT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTCTAATGTGTCAAAAAATCTTATGTTTTGTTTTGTATGTGGTAGT  1000

seq1  ATTAAAAGGGAGGATTTAAGAGATTTGGAGTTCATGAAGTAACTTTTTCA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAGGGAGGATTTAAGAGATTTGGAGTTCATGAAGTAACTTTTTCA  1050

seq1  TGGAATTC  1050
      ||||||||
seq2  TGGAATTC  1058