BAC Information

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BAC

Clone NameB6Ng01-315M04
Chromosome3 (Build37)10 (Build37)
Map Location 88,760,895 - 88,761,006125,298,883 - 125,300,027
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11, 5830417I10Rik, Msto1, Dap3
Downstream geneAsh1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-315M04.bB6Ng01-315M04.g
ACCGA106323GA106324
length9761,116
definitionB6Ng01-315M04.b B6Ng01-315M04.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(88,760,895 - 88,761,006)(125,298,883 - 125,300,027)
sequence
gaattcactttgtagaccaggatggccttgaactcagaaatctgcctgcc
tctgcctcccaagtgctgggactaaaggcgtgcgccaccactgctcagct
agatattagattttaactgtcccttaaggaaccatgtgttaagggcttag
ttttcagggtttggtacaaccataagatagtggctcttaaagcagcagag
cttaatgggtaaaagatacagcactggggtacgccctcagctttcccttt
ttgttcctaaccatctgaggggaatagcattcatccacaaggtactgaac
actctgaggtactaccaagccctcaaacacagacaagatagataacttgg
tgatcgtttttaacttgcttccctcttgttaatctgagctgtaatttttt
tttcaggtattttatcatggcaataggactctaacaccgctctcttagtt
aggtttccattcctgagacgaaacaccatgagcggaaaacaagttgagga
ggaaaggattccctatgtttatacttccacattgttgattatcaccaata
agagtcaggacaggaactcgaacagggcaggaatctagaggcaagagctg
aagcagaagccatggaagggtgctgcttactgacttactccccatggctt
gctcagtctgctttcttatagaaccagggagaactagcccagggatggta
tcactcacaatgggctgggccctcccctattgatcactaattaagaaaat
gccttacagctggatctcatggaggcattttctcaactgaggctccttcc
tctctgatgaccctagcttgttgacacaaaactagccaatacaactgatg
ccttgtcaacttgacacacaagcacaccactattaaaggcccaacccttc
ctttcttattcatccccaagatttctcattaaaaacatagataactttag
aagttccacagtcttttcacaaattc
gaattcttgttaaagttcaaattcctaggctgagggagaaagtcgcaagt
gagcggccacttcagtttgtttagtttctgcaaacagccctgactctgga
gcgtgagctaagaatcagggaccctggagagatgcgaatctgtgagtgtg
cttcaaagcggagtaagaaatgagaccgagtgtgagccatgggatcgccc
aaggagcatcctggaaaggagacaaaactgtgtccacttggtgtcataag
tagggatgctgaggagaagagcgctcaagagtacaagagcagtgtgaaaa
tggatgctctgtgggctgagggtttggaggcaaggagctcccaggtgaga
tgaaacggtgtgtggtgtgttttagagacatttcagaaaggaaaccagaa
agacaggtgagtagtcaccaggagggaataaaggagacaaatgtctatgt
gacacatgggaatggtaggctgtggacacacagctaaaacctcaaaagtg
ccattttagcaaggcactgtgacaaagcataaaggttctttatgcaacac
gtggccctaaaatacctttgttgttcctttctgccaatgcatgtgtgaaa
gggaaggccaaacctcacactcctcctgcagctcctgaaagaacctttat
aatggacccaaattagaaagggtttttactgagtgatatttgatctcact
ccaaatgggaggtcatcaatttggccaaaaaaaaaaggcagttacttaat
gctggctcagcactattctctttgttcatacatttcatttttactcagag
tcagagttatgaaaaactaatcttgggtatttaaaaaatgtactctctac
aaatcttaaaatgctaagccaaaacaaaaaaataaaatctttgtttccac
tgagaggacaaatgtgtcacttaactttgtatataaaggaacactcaggt
ctagagagtggctcagtggttagagcactgtctgctctcagaggttctga
gtcaattccagccacccacatgcagctaaaagctgtctgtacttctgtca
gaagatctacctatccctcacgatgtagccaactattacgtaattaatat
cattgaaaggagagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_88760895_88761006
seq2: B6Ng01-315M04.b_50_448

seq1  TCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCAGCCTGCCTCTG  50
      ||||| ||||||||||| |||||||||||||||||||| |||||||||||
seq2  TCACTTTGTAGACCAGGATGGCCTTGAACTCAGAAATCTGCCTGCCTCTG  50

seq1  CCTCCCAAGTGCTGGGATTAAAGGCATGCGCCACCA-TGCCCGGCTAGCT  99
      ||||||||||||||||| ||||||| |||||||||| ||| | ||||| |
seq2  CCTCCCAAGTGCTGGGACTAAAGGCGTGCGCCACCACTGCTCAGCTAGAT  100

seq1  GTAATTTTTTTTT-------------------------------------  112
         |||   ||||                                     
seq2  ---ATTAGATTTTAACTGTCCCTTAAGGAACCATGTGTTAAGGGCTTAGT  147

seq1  --------------------------------------------------  112
                                                        
seq2  TTTCAGGGTTTGGTACAACCATAAGATAGTGGCTCTTAAAGCAGCAGAGC  197

seq1  --------------------------------------------------  112
                                                        
seq2  TTAATGGGTAAAAGATACAGCACTGGGGTACGCCCTCAGCTTTCCCTTTT  247

seq1  --------------------------------------------------  112
                                                        
seq2  TGTTCCTAACCATCTGAGGGGAATAGCATTCATCCACAAGGTACTGAACA  297

seq1  --------------------------------------------------  112
                                                        
seq2  CTCTGAGGTACTACCAAGCCCTCAAACACAGACAAGATAGATAACTTGGT  347

seq1  --------------------------------------------------  112
                                                        
seq2  GATCGTTTTTAACTTGCTTCCCTCTTGTTAATCTGAGCTGTAATTTTTTT  397

seq1  --  112
        
seq2  TT  399

seq1: chr10_125298883_125300027
seq2: B6Ng01-315M04.g_67_1182

seq1  GAATTCTTGTTAAAGTTCAAATTCCTAGGCTGAGGGAGAAAGTCGCAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTTAAAGTTCAAATTCCTAGGCTGAGGGAGAAAGTCGCAAGT  50

seq1  GAGCGGCCACTTCAGTTTGTTTAGTTTCTGCAAACAGCCCTGACTCTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGGCCACTTCAGTTTGTTTAGTTTCTGCAAACAGCCCTGACTCTGGA  100

seq1  GCGTGAGCTAAGAATCAGGGACCCTGGAGAGATGCGAATCTGTGAGTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGAGCTAAGAATCAGGGACCCTGGAGAGATGCGAATCTGTGAGTGTG  150

seq1  CTTCAAAGCGGAGTAAGAAATGAGACCGAGTGTGAGCCATGGGATCGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAAGCGGAGTAAGAAATGAGACCGAGTGTGAGCCATGGGATCGCCC  200

seq1  AAGGAGCATCCTGGAAAGGAGACAAAACTGTGTCCACTTGGTGTCATAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGCATCCTGGAAAGGAGACAAAACTGTGTCCACTTGGTGTCATAAG  250

seq1  TAGGGATGCTGAGGAGAAGAGCGCTCAAGAGTACAAGAGCAGTGTGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGATGCTGAGGAGAAGAGCGCTCAAGAGTACAAGAGCAGTGTGAAAA  300

seq1  TGGATGCTCTGTGGGCTGAGGGTTTGGAGGCAAGGAGCTCCCAGGTGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGCTCTGTGGGCTGAGGGTTTGGAGGCAAGGAGCTCCCAGGTGAGA  350

seq1  TGAAACGGTGTGTGGTGTGTTTTAGAGACATTTCAGAAAGGAAACCAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACGGTGTGTGGTGTGTTTTAGAGACATTTCAGAAAGGAAACCAGAA  400

seq1  AGACAGGTGAGTAGTCACCAGGAGGGAATAAAGGAGACAAATGTCTATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGTGAGTAGTCACCAGGAGGGAATAAAGGAGACAAATGTCTATGT  450

seq1  GACACATGGGAATGGTAGGCTGTGGACACACAGCTAAAACCTCAAAAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACATGGGAATGGTAGGCTGTGGACACACAGCTAAAACCTCAAAAGTG  500

seq1  CCATTTTAGCAAGGCACTGTGACAAAGCATAAAGGTTCTTTATGCAACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTAGCAAGGCACTGTGACAAAGCATAAAGGTTCTTTATGCAACAC  550

seq1  GTGGCCCTAAAATACCTTTGTTGTTCCTTTCTGCCAATGCATGTGTGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCCTAAAATACCTTTGTTGTTCCTTTCTGCCAATGCATGTGTGAAA  600

seq1  GGGAAGGCCAAACCTCACACTCCTCCTGCAGCTCCTGAAAGAACCTTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGCCAAACCTCACACTCCTCCTGCAGCTCCTGAAAGAACCTTTAT  650

seq1  AATGGACCCAAATTAGAAAGGGTTTTTACTGAGTGATATTTGATCTCACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGACCCAAATTAGAAAGGGTTTTTACTGAGTGATATTTGATCTCACT  700

seq1  CCAAATGGGAGGTCATCAATTTGGCC-AAAAAAAAAGGCAGTTACTTAAT  749
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CCAAATGGGAGGTCATCAATTTGGCCAAAAAAAAAAGGCAGTTACTTAAT  750

seq1  GCTGGCTCAGCACTATTCTCTTTGTTCATACATTTCATTTTTACTCAGAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTCAGCACTATTCTCTTTGTTCATACATTTCATTTTTACTCAGAG  800

seq1  TCAGAGTTATGAAAAACTAATCTTGGGTATTTAAAAAATGTACTCTCTAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTTATGAAAAACTAATCTTGGGTATTTAAAAAATGTACTCTCTAC  850

seq1  AAATCTTAAAATGCTAAGCCAAAACAAAAAAATAAAATCTTTGTTTCCAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTAAAATGCTAAGCCAAAACAAAAAAATAAAATCTTTGTTTCCAC  900

seq1  TGAGAGGACAAATGTGTCACTTAAC-TTGTATATAAAGGAACACTCAGGG  948
      ||||||||||||||||||||||||| ||||||||||||||||||||| ||
seq2  TGAGAGGACAAATGTGTCACTTAACTTTGTATATAAAGGAACACTCA-GG  949

seq1  CCTAGAGAGTTGGCTCAGTGGTTAAGAGCACTGTCTGCTCTTCCAGAGGT  998
       |||||||| ||||||||||||| |||||||||||||||||  |||||||
seq2  TCTAGAGAG-TGGCTCAGTGGTT-AGAGCACTGTCTGCTCT--CAGAGGT  995

seq1  CCTGAGTTCAATTCCCAGCAACCCACATGGCAGCTTAAAGCTGTCTGTAA  1048
       ||||| |||||| ||||| |||||||| |||||| |||||||||||| |
seq2  TCTGAG-TCAATT-CCAGCCACCCACAT-GCAGCTAAAAGCTGTCTGT-A  1041

seq1  CTCCTGTTCCAGAAGATCTAACCCTAATCCCTCACAAATGTAGGCAAAAC  1098
      || ||||  |||||||||||  ||| |||||||||  |||||| |||   
seq2  CTTCTGT--CAGAAGATCTA--CCT-ATCCCTCAC-GATGTAGCCAA---  1082

seq1  CTAAATATACGTAAAATAAAAATAAATTATATAAAAAAAGGAGAGCT  1145
      |||    |||||  ||| || || | |         |||||||||||
seq2  CTA---TTACGT--AATTAATATCATT--------GAAAGGAGAGCT  1116