BAC Information

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BAC

Clone NameB6Ng01-315N08
Chromosome3 (Build37)
Map Location 49,228,306 - 49,357,412
singlet/doubletdoublet
Overlap geneLOC676568, LOC666247, LOC100039579
Upstream gene1700018B24Rik, LOC100039404, EG666230, 4932443G14, LOC545519
Downstream geneLOC100039587, LOC638779, Pcdh18, LOC100039628, LOC639469, Slc7a11, EG621304
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-315N08.bB6Ng01-315N08.g
ACCGA106379GA106380
length1,0721,164
definitionB6Ng01-315N08.b B6Ng01-315N08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,356,329 - 49,357,412)(49,228,306 - 49,229,470)
sequence
gaattctcacctgaggaatactgaatggctgagaaacacctgaaaaaata
ttcagcatccttaatcatcagagaaatgcaaatcaaaacaaccctgagat
tccatctcacaccagtcagaatggctaagatctaaaattcaggtaacagc
acctggaagggttcagagtagagtgaaaacagaaacagatttggtatggt
caagaataggtaatagagaaggaggaatatcagggaaaaaaatggagata
gcttgagtaggagaaacttgcatttgtaaagatggagggaggttctaaag
ttagcatcacacaggagttcgagagatttggagaggtacaggaatgttgg
aggagattgtaaaatgtacaagtatttttacttcccagaatcagtgttga
tatccttatagaagccacaggcaagattcaaggagaatgacccctttgtc
tggaaaagaccaacttcacaaatacttttggaatgctggaggttttgttt
gtttgtttgtttgtttgtttttctgatttgacagtgatctagtttatata
acagttttaacagctcagttgaacttcagaaatacgaaagctgaggtctt
tggcatgagttgtttatattaatacaattacaccttcagaagacaatata
cactagctgcttgtttgtgaagaactttaattagatcttctttgaaggtc
tgatagaactctgcactaaacccatctggtcctggttttttttttttttt
ttttttttttttggttggggaagactattaatgactgctcctatttcttt
aggggatatgggactatttaaatcgttaacttgatcctgatttaactttg
gtacttagtatcttgtctagaaaattgtctatttcgtccaaggttttcca
gtttttgttgagatctagccttttgtagaagaatccgatggtgttttgga
atttcttcaggatctgtaattatgtctcctttcattctgaattgtaataa
gatgctgtcctggcctgcctaaggtttattatctgtgattttctcaaaac
agctctctttggttgatctttg
gaattcaaagctgatgaccataagcatggtccactgtgaatctccaagcc
acacctctgtttacaaatgtcttccatgtcataaaaattttgctgtcagt
cagtatttttagtgaatatttctgggatatataatctctaatgtgtgtaa
gcaaatattacttctattttgttgatgttgttcacacaatgtgccagccc
ttaactctgcacttctgctaacttctctttgtcattgactttttggccac
agcaagccactggtcatataattgagaagtcagcaaacttacattgagag
ttcgaagaaactccttatagagaaaaaaaaaataattggcaggaaatata
aatcatggagattccttaaaacatagccaactctaaaaattagtttattt
acaactctcttcacagttcccatctttcccctagtaagagtgttggctga
tatgtagtcccagtaagttttgctcattaaaattggaaaactaaaagtag
attttcagatgtgcttgaatcacagaaaaaaatctcttcttagatcaatg
tacctctagtggacaactgagcaaactagcacacctaagagatcaatacc
tcagatcaaatactacttttaaatgacagaaatattcagttatggtaact
acaacaaatacaaccatgttaagtttttatctccttcctgaggtgtagaa
gttcatgtctattacctgaagcttggggtcacatgaggtcatgattctta
cagaaggtcctatcatcatctcactaaacatgcatagttcccaactctgt
tctaagtatttatactaatatttatagataatgtagcctttaccaataca
tcaaagaacattcttttggcaatgaatagggactaatacaaaatccacag
ctgtttaaagtatagagaacaaaacatcctatggcttcaaaccccactgt
gtaataactcctgaaacatggctccaacattggttaaaagagtgagaaag
attgtgcataagagaacagaaaatctgctctgagactggtctcctagaaa
tgtggggaggagtctcacttttggataggttcacaatataataggcttgg
tcaaaacatttctaaccaacattcatgttagttaacccttaacttgggaa
gggcttaaaatctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_49356329_49357412
seq2: B6Ng01-315N08.b_47_1118 (reverse)

seq1  CAAAGAATCAACCAAAGAGGAGCTGGTTTTTTGAGAAAATCAACAAGATA  50
      ||||| |||||||||||| ||||||   ||||||||||||||   |||| 
seq2  CAAAG-ATCAACCAAAGA-GAGCTG---TTTTGAGAAAATCA--CAGAT-  42

seq1  AATAAACCCTTAGCCAGGGCACAGGGACAGCATCCTAATTAACAAAATCA  100
      |||||| |||||| |||| ||   ||||||||| || ||||   || |||
seq2  AATAAA-CCTTAGGCAGGCCA---GGACAGCAT-CTTATTA--CAATTCA  85

seq1  GAAATGAAAAGGGAGACATAATAACAGATCCTGAAGAAA-TCCAAAACAC  149
      | |||||||  ||||||||||| |||||||||||||||| ||||||||||
seq2  G-AATGAAA--GGAGACATAATTACAGATCCTGAAGAAATTCCAAAACAC  132

seq1  CATCGGATCCTTCTACAAAAGGCTAGA-CTCAAC-AAAACTGGAAAACC-  196
      |||||||| |||||||||||||||||| |||||| |||||||||||||| 
seq2  CATCGGATTCTTCTACAAAAGGCTAGATCTCAACAAAAACTGGAAAACCT  182

seq1  TGGACGAAATAGACAAATTTCTAGAC-AGATACTAAGTACCAAAGTTAAA  245
      |||||||||||||||| ||||||||| |||||||||||||||||||||||
seq2  TGGACGAAATAGACAATTTTCTAGACAAGATACTAAGTACCAAAGTTAAA  232

seq1  TCAGGATCAAGTTAACGATTTAAATAGTCCCATATCCCCTAAAGAAATAG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATCAAGTTAACGATTTAAATAGTCCCATATCCCCTAAAGAAATAG  282

seq1  GAGCAGTCATTAATAGTCT--CCCAACCAAAAAAAAAAAAAAAAAAAAAA  343
      |||||||||||||||||||  ||||||| |||||||||||||||||||||
seq2  GAGCAGTCATTAATAGTCTTCCCCAACC-AAAAAAAAAAAAAAAAAAAAA  331

seq1  AAAAAACCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAA  381

seq1  AGAAGATCTAATTAAAGTTCTTCACAAACAAGCAGCTAGTGTATATTGTC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATCTAATTAAAGTTCTTCACAAACAAGCAGCTAGTGTATATTGTC  431

seq1  TTCTGAAGGTGTAATTGTATTAATATAAACAACTCATGCCAAAGACCTCA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAGGTGTAATTGTATTAATATAAACAACTCATGCCAAAGACCTCA  481

seq1  GCTTTCGTATTTCTGAAGTTCAACTGAGCTGTTAAAACTGTTATATAAAC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCGTATTTCTGAAGTTCAACTGAGCTGTTAAAACTGTTATATAAAC  531

seq1  TAGATCACTGTCAAATCAGAAAAACAAACAAACAAACAAACAAACAAAAC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCACTGTCAAATCAGAAAAACAAACAAACAAACAAACAAACAAAAC  581

seq1  CTCCAGCATTCCAAAAGTATTTGTGAAGTTGGTCTTTTCCAGACAAAGGG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCATTCCAAAAGTATTTGTGAAGTTGGTCTTTTCCAGACAAAGGG  631

seq1  GTCATTCTCCTTGAATCTTGCCTGTGGCTTCTATAAGGATATCAACACTG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTCTCCTTGAATCTTGCCTGTGGCTTCTATAAGGATATCAACACTG  681

seq1  ATTCTGGGAAGTAAAAATACTTGTACATTTTACAATCTCCTCCAACATTC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGGGAAGTAAAAATACTTGTACATTTTACAATCTCCTCCAACATTC  731

seq1  CTGTACCTCTCCAAATCTCTCGAACTCCTGTGTGATGCTAACTTTAGAAC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACCTCTCCAAATCTCTCGAACTCCTGTGTGATGCTAACTTTAGAAC  781

seq1  CTCCCTCCATCTTTACAAATGCAAGTTTCTCCTACTCAAGCTATCTCCAT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCCATCTTTACAAATGCAAGTTTCTCCTACTCAAGCTATCTCCAT  831

seq1  TTTTTTCCCTGATATTCCTCCTTCTCTATTACCTATTCTTGACCATACCA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCCCTGATATTCCTCCTTCTCTATTACCTATTCTTGACCATACCA  881

seq1  AATCTGTTTCTGTTTTCACTCTACTCTGAACCCTTCCAGGTGCTGTTACC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGTTTCTGTTTTCACTCTACTCTGAACCCTTCCAGGTGCTGTTACC  931

seq1  TGAATTTTAGATCTTAGCCATTCTGACTGGTGTGAGATGGAATCTCAGGG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTTAGATCTTAGCCATTCTGACTGGTGTGAGATGGAATCTCAGGG  981

seq1  TTGTTTTGATTTGCATTTCTCTGATGATTAAGGATGCTGAATATTTTTTC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGATTTGCATTTCTCTGATGATTAAGGATGCTGAATATTTTTTC  1031

seq1  AGGTGTTTCTCAGCCATTCAGTATTCCTCAGGTGAGAATTC  1084
      |||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTTTCTCAGCCATTCAGTATTCCTCAGGTGAGAATTC  1072

seq1: chr3_49228306_49229470
seq2: B6Ng01-315N08.g_66_1229

seq1  GAATTCAAAGCTGATGACCATAAGCATGGTCCACTGTGAATCTCCAAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGCTGATGACCATAAGCATGGTCCACTGTGAATCTCCAAGCC  50

seq1  ACACCTCTGTTTACAAATGTCTTCCATGTCATAAAAATTTTGCTGTCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTCTGTTTACAAATGTCTTCCATGTCATAAAAATTTTGCTGTCAGT  100

seq1  CAGTATTTTTAGTGAATATTTCTGGGATATATAATCTCTAATGTGTGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATTTTTAGTGAATATTTCTGGGATATATAATCTCTAATGTGTGTAA  150

seq1  GCAAATATTACTTCTATTTTGTTGATGTTGTTCACACAATGTGCCAGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATATTACTTCTATTTTGTTGATGTTGTTCACACAATGTGCCAGCCC  200

seq1  TTAACTCTGCACTTCTGCTAACTTCTCTTTGTCATTGACTTTTTGGCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTCTGCACTTCTGCTAACTTCTCTTTGTCATTGACTTTTTGGCCAC  250

seq1  AGCAAGCCACTGGTCATATAATTGAGAAGTCAGCAAACTTACATTGAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCCACTGGTCATATAATTGAGAAGTCAGCAAACTTACATTGAGAG  300

seq1  TTCGAAGAAACTCCTTATAGAGAAAAAAAAAATAATTGGCAGGAAATATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAAGAAACTCCTTATAGAGAAAAAAAAAATAATTGGCAGGAAATATA  350

seq1  AATCATGGAGATTCCTTAAAACATAGCCAACTCTAAAAATTAGTTTATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATGGAGATTCCTTAAAACATAGCCAACTCTAAAAATTAGTTTATTT  400

seq1  ACAACTCTCTTCACAGTTCCCATCTTTCCCCTAGTAAGAGTGTTGGCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTCTCTTCACAGTTCCCATCTTTCCCCTAGTAAGAGTGTTGGCTGA  450

seq1  TATGTAGTCCCAGTAAGTTTTGCTCATTAAAATTGGAAAACTAAAAGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAGTCCCAGTAAGTTTTGCTCATTAAAATTGGAAAACTAAAAGTAG  500

seq1  ATTTTCAGATGTGCTTGAATCACAGAAAAAAATCTCTTCTTAGATCAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAGATGTGCTTGAATCACAGAAAAAAATCTCTTCTTAGATCAATG  550

seq1  TACCTCTAGTGGACAACTGAGCAAACTAGCACACCTAAGAGATCAATACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCTAGTGGACAACTGAGCAAACTAGCACACCTAAGAGATCAATACC  600

seq1  TCAGATCAAATACTACTTTTAAATGACAGAAATATTCAGTTATGGTAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATCAAATACTACTTTTAAATGACAGAAATATTCAGTTATGGTAACT  650

seq1  ACAACAAATACAACCATGTTAAGTTTTTATCTCCTTCCTGAGGTGTAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAAATACAACCATGTTAAGTTTTTATCTCCTTCCTGAGGTGTAGAA  700

seq1  GTTCATGTCTATTACCTGAAGCTTGGGGTCACATGAGGTCATGATTCTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATGTCTATTACCTGAAGCTTGGGGTCACATGAGGTCATGATTCTTA  750

seq1  CAGAAGGTCCTATCATCATCTCACTAAACATGCATAGTTCCCAACTCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGTCCTATCATCATCTCACTAAACATGCATAGTTCCCAACTCTGT  800

seq1  TCTAAGTATTTATACTAATATTTATAGATAATGTAGCCTTTACCAATACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGTATTTATACTAATATTTATAGATAATGTAGCCTTTACCAATACA  850

seq1  TCAAAGAACATTCTTTTGGCAATGAATAGGGACTAATACAAAAATCCACA  900
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TCAAAGAACATTCTTTTGGCAATGAATAGGGACTAATAC-AAAATCCACA  899

seq1  GCTGTTTAAAGTATAGAGAACAAAACATCCTATGGCTTCAAACCCCACTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTAAAGTATAGAGAACAAAACATCCTATGGCTTCAAACCCCACTG  949

seq1  TGTAATAACTCCTGAAACATGGGCTCCAAACATTGGTTAAAAGAGTGAGA  1000
      |||||||||||||||||||| |||||| ||||||||||||||||||||||
seq2  TGTAATAACTCCTGAAACAT-GGCTCC-AACATTGGTTAAAAGAGTGAGA  997

seq1  AAGATTGTGCATAAGAGGAACAGAAAATCTGCTCTGAGACTGGGTCTCCT  1050
      |||||||||||||||| |||||||||||||||||||||||| ||||||||
seq2  AAGATTGTGCATAAGA-GAACAGAAAATCTGCTCTGAGACT-GGTCTCCT  1045

seq1  AGAAATGT-GGGAGGAGTCTTCACTTTT-GATAGTTCAACAATATAATAG  1098
      |||||||| |||||||||| |||||||| ||||| |  ||||||||||||
seq2  AGAAATGTGGGGAGGAGTC-TCACTTTTGGATAGGTTCACAATATAATAG  1094

seq1  GCTT-GTCAAAACAATTTCTAAACAAAACATCCATGTTAG-TAACAC-TA  1145
      |||| |||||||| |||||||| |  ||||| |||||||| |||| | ||
seq2  GCTTGGTCAAAAC-ATTTCTAACC--AACATTCATGTTAGTTAACCCTTA  1141

seq1  AC-TGGGAAGGGGT--AAATCTT  1165
      || ||||||||| |  |||||||
seq2  ACTTGGGAAGGGCTTAAAATCTT  1164