BAC Information

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BAC

Clone NameB6Ng01-315N18
Chromosome3 (Build37)
Map Location 25,402,826 - 25,403,955
singlet/doubletsinglet
Overlap geneNlgn1
Upstream geneEG635702, LOC100039592
Downstream geneLOC621017, LOC229152
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-315N18.bB6Ng01-315N18.g
ACCGA106399GA106400
length1,1761,129
definitionB6Ng01-315N18.b B6Ng01-315N18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgcactaaaaccatctagccttgtgcttttttgtgtgattgagg
gacttttaatgactgtttcgatttccttagggcttatagggctatttaaa
tggttaacccaatcttcatttaactttggtaagtggtatctgtctcaaag
atcaagactttccaattttgtggaatacaggcttttgaagtaagacctga
tgattctttgaattttctcattcactgttgttttgtctcccctttcattt
ctgattgtgcttgtttggcttctctctctctctctctctctctctctctc
tctctctcacacacacacacactaggtacacacacacaaagtttttcttt
tctcgcacattttctcacagagacggtctctctctagagtgtttaaaaaa
aaaaaaagagacgcacacatatgtgtcttttttctacagagagagaaaaa
atattgctctctatatctctttagagagagcgatctctgtgccaaacatg
tgagagagagagagtgtgtcttcccctatcaggagtttctcctttctata
tctatacacacacacattctctctcgcgagagagcgatatctctcaatga
aagagagagactctctctctctctctctgtgtctctctctcaattgagac
acatattatatatatactgcctccataatatatatcctcttgtatagata
cgagacatgagtgtatatgtctccgctgtttctctcgcgcgtgtatgtgt
gtgtcacacacagaagatatgaaaagagagagagagatatatctatggag
gagacatacacataaaaaaatattcataaaaacactcagtactgtctcac
tctttcttctttatgatggatgcgcgccgcgctagacggcgactctagag
tatatccaccagcagctaatatgaaggaagtacccccccccgccgtgggg
gggagagtgattagtccccgccctgcgttggcgcctgtcgtgctgccgag
ggaactatatctcatgcaaatagtgtgtttattaacacaaccaaccccac
agcacctccctttgctattctgtaagaaatgatataggaggagcatctcg
ttcaagcgccccccccccccatgaaaggagggtgagcttttctcttaact
tccaactcctcttgtgttttgtttgt
gaattccaaataagtataatttcacatattaagagtacttggaaattttg
cctatattttgggagcattatgaaaatgatttttcattagaggaacattt
atttcacagtaatagttactaatttattaatttctataaagttgggttct
gagggtaaaagaagacaaagttctagattacagaaaattcaagcaccatt
tccaggtgcatgaccagttttaatgagctaaacaattttctttaactgaa
tgtatgaggccaaatggaatgtttttaaaagtcaaagttttaagtttgga
gtcgccagtctttgtcttatggaacataaaatctgtctagagagcaccac
aggtccacctacagagttagttctgagtccatcttgatgaaaacatcttg
acctagactagaatagaggagattggttaaccctttacagccagagacat
ggtcaacctggagtgaagccactgaaatagtgcatttccactccatttta
gcatctaatcagtctatgtttgtaaagctagaccttggttcaatgaagaa
taatcagatgcaaattattccttgaaggtatatcatcagtagagtttaat
catccacatggagttttagaacagaaagacagtgtgaaagaaattactta
aaactgggacaattcagtaaagaataccttaaagtaaaaacaaaacaaaa
ataatgtgtactcaaggacctctggagaaaagacaggtcttttttaataa
gagataattggaagctaccacagtcagaatgatcctgtttaatggttcac
tatctataaattctaaaaggttcccaacacttttaaatatcagtttatca
tgttatttgttcccttatcccaactgttatatgtcacatgcatgttcatt
tgtgaaagcatctgacatggaatttaaatctctgtcaaacatgaactcaa
aaaaaaaaatggactcactaagtgtcaacaagaaatctctttttttctat
ttcatcactaatacttctactattctcccacatacttcacactatggggt
taaaaatcaaagatctcatattgtataccatgtttttattaaaactgtaa
tggagctagcttgcgaaacatactaatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_25402826_25403955
seq2: B6Ng01-315N18.g_65_1193

seq1  GAATTCCAAATAAGTATAATTTCACATATTAAGAGTACTTGGAAATTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAATAAGTATAATTTCACATATTAAGAGTACTTGGAAATTTTG  50

seq1  CCTATATTTTGGGAGCATTATGAAAATGATTTTTCATTAGAGGAACATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATATTTTGGGAGCATTATGAAAATGATTTTTCATTAGAGGAACATTT  100

seq1  ATTTCACAGTAATAGTTACTAATTTATTAATTTCTATAAAGTTGGGTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCACAGTAATAGTTACTAATTTATTAATTTCTATAAAGTTGGGTTCT  150

seq1  GAGGGTAAAAGAAGACAAAGTTCTAGATTACAGAAAATTCAAGCACCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTAAAAGAAGACAAAGTTCTAGATTACAGAAAATTCAAGCACCATT  200

seq1  TCCAGGTGCATGACCAGTTTTAATGAGCTAAACAATTTTCTTTAACTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGTGCATGACCAGTTTTAATGAGCTAAACAATTTTCTTTAACTGAA  250

seq1  TGTATGAGGCCAAATGGAATGTTTTTAAAAGTCAAAGTTTTAAGTTTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGAGGCCAAATGGAATGTTTTTAAAAGTCAAAGTTTTAAGTTTGGA  300

seq1  GTCGCCAGTCTTTGTCTTATGGAACATAAAATCTGTCTAGAGAGCACCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGCCAGTCTTTGTCTTATGGAACATAAAATCTGTCTAGAGAGCACCAC  350

seq1  AGGTCCACCTACAGAGTTAGTTCTGAGTCCATCTTGATGAAAACATCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCACCTACAGAGTTAGTTCTGAGTCCATCTTGATGAAAACATCTTG  400

seq1  ACCTAGACTAGAATAGAGGAGATTGGTTAACCCTTTACAGCCAGAGACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGACTAGAATAGAGGAGATTGGTTAACCCTTTACAGCCAGAGACAT  450

seq1  GGTCAACCTGGAGTGAAGCCACTGAAATAGTGCATTTCCACTCCATTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAACCTGGAGTGAAGCCACTGAAATAGTGCATTTCCACTCCATTTTA  500

seq1  GCATCTAATCAGTCTATGTTTGTAAAGCTAGACCTTGGTTCAATGAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTAATCAGTCTATGTTTGTAAAGCTAGACCTTGGTTCAATGAAGAA  550

seq1  TAATCAGATGCAAATTATTCCTTGAAGGTATATCATCAGTAGAGTTTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAGATGCAAATTATTCCTTGAAGGTATATCATCAGTAGAGTTTAAT  600

seq1  CATCCACATGGAGTTTTAGAACAGAAAGACAGTGTGAAAGAAATTACTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCACATGGAGTTTTAGAACAGAAAGACAGTGTGAAAGAAATTACTTA  650

seq1  AAACTGGGACAATTCAGTAAAGAATACCTTAAAGTAAAAACAAAACAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGGACAATTCAGTAAAGAATACCTTAAAGTAAAAACAAAACAAAA  700

seq1  ATAATGTGTACTCAAGGACCTCTGGAGAAAAGACAGGTCTTTTTTAATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTGTACTCAAGGACCTCTGGAGAAAAGACAGGTCTTTTTTAATAA  750

seq1  GAGATAATTGGAAGCTACCACAGTCAGAATGATCCTGTTTAATGGTTCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAATTGGAAGCTACCACAGTCAGAATGATCCTGTTTAATGGTTCAC  800

seq1  TATCTATAAATTCTAAAAGGTTCCCAACACTTTTAAATATCAGTTTATCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATAAATTCTAAAAGGTTCCCAACACTTTTAAATATCAGTTTATCA  850

seq1  TGTTATTTGTTCCCTTATCCCAACTGTTATATGTCACATGCATGTTCATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTTGTTCCCTTATCCCAACTGTTATATGTCACATGCATGTTCATT  900

seq1  TGTGAAAGCATCTGACATGGAATTTAAATCTCTGTCAAAACATGAACTCA  950
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGTGAAAGCATCTGACATGGAATTTAAATCTCTGTC-AAACATGAACTCA  949

seq1  AAAAAAAAAATGGACTCACTAAGTTGTCAAC-AGAAATCTC--TTTTTCT  997
      ||||||||||||||||||||||| ||||||| |||||||||  |||||||
seq2  AAAAAAAAAATGGACTCACTAAG-TGTCAACAAGAAATCTCTTTTTTTCT  998

seq1  ATTTCATCACTAATACTTCTACTATTCT-CCACATAACCTCAACACTATG  1046
      |||||||||||||||||||||||||||| |||||||  ||  ||||||||
seq2  ATTTCATCACTAATACTTCTACTATTCTCCCACATA--CTTCACACTATG  1046

seq1  GGGTT-AAAATCAAAGATCTCATA-TGTATA-CATGTTTATAAAAAACTT  1093
      ||||| |||||||||||||||||| |||||| ||||||| ||  |||  |
seq2  GGGTTAAAAATCAAAGATCTCATATTGTATACCATGTTTTTATTAAAACT  1096

seq1  GTAAATGAGCTAGCTTTGAGAAACATATACATAATCT  1130
      ||||  |||||||| ||| ||||||||    ||||||
seq2  GTAATGGAGCTAGC-TTGCGAAACATA---CTAATCT  1129