BAC Information

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BAC

Clone NameB6Ng01-315P12
Chromosome3 (Build37)
Map Location 93,428,932 - 93,430,046
singlet/doubletsinglet
Overlap genenone
Upstream geneLce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1, S100a11, S100a10
Downstream geneEG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-315P12.bB6Ng01-315P12.g
ACCGA106481GA106482
length1,1021,170
definitionB6Ng01-315P12.b B6Ng01-315P12.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctgcctcctgagaccctgctccagagtcatccagattaagagc
tagatggactaaaactgactcctttgaaggcaaacacctgtgtaatctgt
tgcttgtaattttaaaaatccaggctagcttgggctaggctctggaatca
gtagccaccatttcttccttgcccaatgaggaaaatggccttctagctct
ggttccctctgctggcttgctaagccagccaaggctgtccttcaagagaa
tgcctggagctactgttcttgttctacaggtcattcaccccaccaactcc
cacctggggtgagtctttagagcaccaatgacccctccatagtttcaccc
tttctcttgcccaccaaaatatttgcaaatgaaaaacaccacataatctt
aatatttaataccagccagatttttattggtaaattgccaaccccaatat
gcccatgcaaagaacacacaactcaattatactatttaaaagctgcatac
ctaaattgggcagatacaccactacactaccctattccccagctatgaga
tctcttgctacttgtggctcctccaggccacatggttctgctctttcatc
ttctcttcctccatcttcctctttctgtgtccctccttttcatcttcctt
tttcctccttcctctctccttctctaaaacttgtagccctgcctttccct
tccattgcccagtttttatgtgaccacttaaaatggggagcaggttcaca
tggagtcacctgagtatgagaccctgctcctcatcggggtaggattagca
tcaaaatacaaataacaccaaggcaatccacaaaagaaatcaataaacag
aatcaatttttatattcatgtcatattttataaaggtatggttttgtcta
acgagctggtttgggccattgccttagggttttattactgtgaacagaca
tcttgactaagcaactcttataagacatttaattgagttgtcttatagtt
cagagttcagacaatatgatcaggttgatatggcactcagacgcatggtt
ccagaggagcagaagaattacatccttcattctgaatctttcctagagac
tg
gaattctaagcccttagtctgctcaaggactttctaggatgctatctttt
gcctctaaatttttatctatataatatgttgctctgacaaagctatggaa
atattcttatgcttatcattaacaaaatgggcagtatgtagctgttgatc
taaagctgtggtagataccttttcaaagtttgtattctcagatttttaaa
ccaaagatcgtttcttaactctaatacgcagcaaaacataagtaggtctc
ttacaaaaacataacagtagattccttatctaaattaggatttacacaat
tagttaattgacaagaattacaatgaatattttagacttgccaagattgg
cgatcttaactcttaaaattatcgaacaataaataagcatataggtaagg
tacacaaactttcatagctataaggagctggcctgagtggccaaaaacag
tgtctctgacgaaagcatcttgtacattctctgtaccagtctttttgcct
cacgagtcagcttttttagttgtttgtattttaagttggcaccaggttgg
tactccttgctgcagcccatggtggagatacgaagtttctttatctgttt
gtatgtggctgctctcagatttctcctcttttgtggactcaacacagctt
tttggtcaccactgtcaaggcactcacaggtcacaggtcagcctgtcaca
ttggaagctagcatactcttgtagcattctgtggaaaaaacagaaacatt
cccccttttccccatattaagtatctgaacaggatcatggcatgtgccaa
taagtggatcctttttctgccctagacactattatatccagttttccaaa
taatgtgcacggggatataatttctctccccccttctttgtttttaagaa
aggtatagtttttaaaggttttacataccttgtctttgagaattataaaa
tatctcagtaacatgtgtacattaaattgttgacaaaacatcttttggga
ggtttgaaaataaaaattttggaagcaataattttttctttttttagatc
ttctgtaactaaatcctagaatattaaaaatattatttgcttcttgatct
tatgggagcacaactattctcgactagcttcttagagggcttagctaaat
aaaataccttccttaacgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_93428932_93430046
seq2: B6Ng01-315P12.b_48_1149

seq1  GAATTCTCTGCCTCCTGAGACCCTGCTCCAGAGTCATCCAGATTAAGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGCCTCCTGAGACCCTGCTCCAGAGTCATCCAGATTAAGAGC  50

seq1  TAGATGGACTAAAACTGACTCCTTTGAAGGCAAACACCTGTGGAATCTGT  100
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TAGATGGACTAAAACTGACTCCTTTGAAGGCAAACACCTGTGTAATCTGT  100

seq1  TGCTTGTAATTTTAAAAATCCAGGCTAGCTTGGGCTAGGCTCTGGAATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTAATTTTAAAAATCCAGGCTAGCTTGGGCTAGGCTCTGGAATCA  150

seq1  GTAGCCACCATTTCTTCCTTGCCCAATGAGGAAAATGGCCTTCTGGCCCT  200
      |||||||||||||||||||||||||||||||||||||||||||| || ||
seq2  GTAGCCACCATTTCTTCCTTGCCCAATGAGGAAAATGGCCTTCTAGCTCT  200

seq1  GGTTCCCTCTGCTGGCTTGCTAAGCCAGCCAAGGCTGTTCCTTCAAGAGA  250
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GGTTCCCTCTGCTGGCTTGCTAAGCCAGCCAAGGCTG-TCCTTCAAGAGA  249

seq1  ATGCCTGGAGCTACTGTTCTTGTTCTACAGGTCATTCACCCCAGCAACTC  300
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATGCCTGGAGCTACTGTTCTTGTTCTACAGGTCATTCACCCCACCAACTC  299

seq1  CTACCTGGGGTGAGTCTTTAGACCACCAATGACCCCTCCATAGTTTCACC  350
      | |||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CCACCTGGGGTGAGTCTTTAGAGCACCAATGACCCCTCCATAGTTTCACC  349

seq1  CTTTCTCTTGCCCACCTAAATATTTGCAAATGAAAAACACCACATAACCT  400
      |||||||||||||||| |||||||||||||||||||||||||||||| ||
seq2  CTTTCTCTTGCCCACCAAAATATTTGCAAATGAAAAACACCACATAATCT  399

seq1  TAATATTTAATACCAGCCAGATTTTTATTGGTAAATTGCCAACCCCAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTTAATACCAGCCAGATTTTTATTGGTAAATTGCCAACCCCAATA  449

seq1  TGCCCATGCAAAGAACACACAACTCAATTATACTATTTAAAAGCTGCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCATGCAAAGAACACACAACTCAATTATACTATTTAAAAGCTGCATA  499

seq1  CCTAAATTGGGCAGATACACCACTACACTACCCTATTCCCCAGCTATGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAATTGGGCAGATACACCACTACACTACCCTATTCCCCAGCTATGAG  549

seq1  ATCCCTTGCTACTTGTGGCTCCTCCAGGCCACATGGTTCTGCTCTTTCAT  600
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTGCTACTTGTGGCTCCTCCAGGCCACATGGTTCTGCTCTTTCAT  599

seq1  CTTCTCTTCCTCCATCTTCCTCTTTCTTTGTCCCTCCTTCTCATCTTCCT  650
      ||||||||||||||||||||||||||| ||||||||||| ||||||||||
seq2  CTTCTCTTCCTCCATCTTCCTCTTTCTGTGTCCCTCCTTTTCATCTTCCT  649

seq1  TTTTCCTCCTTCCTCTCTCCTTCTCTAAAACTTGTAGCCCTGCCTTTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTCCTTCCTCTCTCCTTCTCTAAAACTTGTAGCCCTGCCTTTCCC  699

seq1  TTCCATTGCCCAGTTTTTATGTGACCGCTTAAAATGGGGAGCAGGTTCAC  750
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTCCATTGCCCAGTTTTTATGTGACCACTTAAAATGGGGAGCAGGTTCAC  749

seq1  ATGGAGTCACCTGAGTATGAGACCCCGCTCCTCATCGGGGTAGGATTAGC  800
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATGGAGTCACCTGAGTATGAGACCCTGCTCCTCATCGGGGTAGGATTAGC  799

seq1  ATCAAAATACAAATAACACCAAGGCAATCCACAAAAGAAATCAATAAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAATACAAATAACACCAAGGCAATCCACAAAAGAAATCAATAAACA  849

seq1  GAATCAATTTTTATATTCATATCATATTTTATAAAGGTATGGTTTTGTCT  900
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GAATCAATTTTTATATTCATGTCATATTTTATAAAGGTATGGTTTTGTCT  899

seq1  AACGAGCTGGTTT-GGCCATCGCCTTAGGGTTTTATTACTGTGAACAGAC  949
      ||||||||||||| |||||| |||||||||||||||||||||||||||||
seq2  AACGAGCTGGTTTGGGCCATTGCCTTAGGGTTTTATTACTGTGAACAGAC  949

seq1  ATCTTGACTAAAGCAACTCTTATAAGGACATTTAATTGGAGTTGTCTTAT  999
      ||||||||| ||||||||||||||| ||||||||||| ||||||||||||
seq2  ATCTTGACT-AAGCAACTCTTATAA-GACATTTAATT-GAGTTGTCTTAT  996

seq1  AGGTTCAGAAGTTCAGACCATTATGATCAAGGTTGGAACATGGAAACCTC  1049
      | |||||| |||||||| || ||||||| ||||||  | |||| |  |||
seq2  A-GTTCAG-AGTTCAGA-CAATATGATC-AGGTTG--ATATGGCA--CTC  1038

seq1  CAAGAAGGCATGGTACAAGAGGAGCAG-AGAATTTTACAT-CTTCA-TCT  1096
        || | ||||||| | |||||||||| ||||  |||||| ||||| |||
seq2  --AG-ACGCATGGTTCCAGAGGAGCAGAAGAA--TTACATCCTTCATTCT  1083

seq1  GAAATCTT--CTAGAAGACTG  1115
      | ||||||  |||| ||||||
seq2  G-AATCTTTCCTAG-AGACTG  1102