BAC Information

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BAC

Clone NameB6Ng01-316B15
Chromosome3 (Build37)
Map Location 95,207,260 - 95,384,266
singlet/doubletdoublet
Overlap geneLOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1
Upstream geneLingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik
Downstream geneGolph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316B15.bB6Ng01-316B15.g
ACCGA106581GA106582
length4831,122
definitionB6Ng01-316B15.b B6Ng01-316B15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,207,260 - 95,207,739)(95,383,140 - 95,384,266)
sequence
taagattgcacgtgtgagccaccacgctcagtttccaaatacatttttaa
gtaaaaaaaaaaaaaaaaaaaaaagccaatgaattgttggaagccagact
tgggtggccatgtctttaatcaagtattctaaaggcagaggaaagaggat
gtgagttttacaatagaagttccaggccagtgtgcactacagtgtgacag
cctatctcaagataaaacagaatgatctacaaagtgagttccaggacagc
cagggctatacagagaaaccctgtctggaaaaaaaaagaaagaaagaaag
aaagaaagaaagaaagaaagaaagaaagaaagaaagaaaggaaggaagga
aggaaggaaggaaggaaggaaggaaggaaggaagaaggaaggaaggaagg
aaggaaggaaagaaagaaagaaagaattaaagaaagaaataaatattgaa
agaaagaaagaaagaaagaaagaaagaaagaaa
gaattccaggctaaacaggggtaccttgtaagacccaggctcaaacaaac
aagtaaagtaaaacagaacaaaataaaattgaaagtcagatggaatgacc
aagtttatacctgacaatgagaaattgaaggactttggctctttttgaat
tgcatagtttcttcttccttacaatctaaatttggttctgtaaaaaaaaa
aataagaagagaagaaagttaaatggtatgaaattgaattagtagttaat
aaacatttttgttagcttcttacctttgatttcagaagctccagagtttt
cattctgttcgttcattttagttttaatgtcaaaattattctatataaat
atgaaaaattgaacatactttaacaataaatgaaaacaattaagtagtaa
tattagtgaacacatttgctttatgtatatgataaatacaactatcttat
gcttgttagaaatacaaatggtgctagaattactaccaaaaaggattttt
tttttctttttttgagggtttctctgtgtaacagctttggctattctgga
acttgctttgtagaccagtctggtgtcacatctgcctaattctgctccta
attaaaggcatgcacaaccatacccaacccacaaattttattcaaaaaaa
ataaactctactttttagggttgttttaagggtaacaaaaaagcatattt
ttcaaaattatgtgcttattctaaatctttagatcttattgtttgagagc
attgaattaagtaggtttacacagctatacatataactgaacatgtcaac
tcttcagaaagtcactggaggatgaacatatggtatgatagaaataactg
gcttaaaggtctaaattattgttccctttgtgaagtgtgtaagagaaact
caaatattttgtgtatgcatctatataaatgcatgtatacacatgtgtag
gaattagatgtagaggccagagttgatatagtgttatctgtatcattctt
tatatgttaatgagacaggtctccacttgtttcctgactgtctggaattt
attatataagtccagctggcttgatctcacaggttatctgactgccatgc
cttcctgaggttgggaatttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_95207260_95207739
seq2: B6Ng01-316B15.b_47_535

seq1  GAATTCTAAGATTGCACGTGTGAGCCACCACGCTCAG-GTCCAAATACAT  49
      |||||||||||||||||||||||||||||||||||||  |||||||||||
seq2  GAATTCTAAGATTGCACGTGTGAGCCACCACGCTCAGTTTCCAAATACAT  50

seq1  TTTTAAGTAAAAAAAAAAAAAAAAAAAAAAGCCAATGAATTGTTGGAAGC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGTAAAAAAAAAAAAAAAAAAAAAAGCCAATGAATTGTTGGAAGC  100

seq1  CAGACTTGGGTGGCCATGTCTTTAATCAAGTATTCTAAAGGCAGAGGAAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTTGGGTGGCCATGTCTTTAATCAAGTATTCTAAAGGCAGAGGAAA  150

seq1  GAGGATGTGAGTTTTACAATAGAAGTTCCAGGCCAGTGTGCACTACAGTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATGTGAGTTTTACAATAGAAGTTCCAGGCCAGTGTGCACTACAGTG  200

seq1  TGACAGCCTATCTCAAGATAAAACAGAATGATCTACAAAGTGAGTTCCAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGCCTATCTCAAGATAAAACAGAATGATCTACAAAGTGAGTTCCAG  250

seq1  GACAGCCAGGGCTATACAGAGAAACCCTGTCTGGAAAAAAAAAGAAAGAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCCAGGGCTATACAGAGAAACCCTGTCTGGAAAAAAAAAGAAAGAA  300

seq1  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAG  350

seq1  GAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAGGAAGGAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAGGAAGGAA  400

seq1  GGAAGGAAGGAAGGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA-----  444
      ||||||||||||||||||||||||||||||||  |||||||||||     
seq2  GGAAGGAAGGAAGGAAAGAAAGAAAGAAAGAATTAAAGAAAGAAATAAAT  450

seq1  ---GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  480
         ||||||||||||||||||||||||||||||||||||
seq2  ATTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  489

seq1: chr3_95383140_95384266
seq2: B6Ng01-316B15.g_68_1189 (reverse)

seq1  TTAAA-TCCCAACACTCAGG-AGGCATGGGCAGTCAGATAA-CTGTGAGA  47
      ||||| ||||||| |||||| |||||| ||||||||||||| ||||||||
seq2  TTAAATTCCCAAC-CTCAGGAAGGCAT-GGCAGTCAGATAACCTGTGAGA  48

seq1  TCAAGGCCAGCCTGGAC-TATATAATAAATTCCAGACCAGTCAGGGAAAC  96
      |||| ||||| |||||| |||||||||||||||||| |||||||| ||  
seq2  TCAA-GCCAG-CTGGACTTATATAATAAATTCCAGA-CAGTCAGGAAACA  95

seq1  AGT-GAGACCCTGTCTCATTAACATATAAAGAATGATACAAGATAACAAC  145
      ||| |||| |||||||||||||||||||||||||||||| ||||||||  
seq2  AGTGGAGA-CCTGTCTCATTAACATATAAAGAATGATAC-AGATAACA--  141

seq1  CTATATCAACCTCTGGCCTCTACATCCTAATTCCTACACATGTGTATACA  195
      ||||||||| ||||||||||||||| ||||||||||||||||||||||||
seq2  CTATATCAA-CTCTGGCCTCTACAT-CTAATTCCTACACATGTGTATACA  189

seq1  TGCATTTATATAGATGCATACACAAAATATTTGAGTTTCTCTTACACACT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTATATAGATGCATACACAAAATATTTGAGTTTCTCTTACACACT  239

seq1  TCACAAAGGGAACAATAATTTAGACC-TTAAGCCAGTTATTTCTATCATA  294
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TCACAAAGGGAACAATAATTTAGACCTTTAAGCCAGTTATTTCTATCATA  289

seq1  CCATATGTTCATCCTCCAGTGACTTTCTGAAGAGTTGACATGTTCAGTTA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATGTTCATCCTCCAGTGACTTTCTGAAGAGTTGACATGTTCAGTTA  339

seq1  TATGTATAGCTGTGTAAACCTACTTAATTCAATGCTCTCAAACAATAAGA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATAGCTGTGTAAACCTACTTAATTCAATGCTCTCAAACAATAAGA  389

seq1  TCTAAAGATTTAGAATAAGCACATAATTTTGAAAAATATGCTTTTTTGTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAGATTTAGAATAAGCACATAATTTTGAAAAATATGCTTTTTTGTT  439

seq1  ACCCTTAAAACAACCCTAAAAAGTAGAGTTTATTTTTTTTGAATAAAATT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTAAAACAACCCTAAAAAGTAGAGTTTATTTTTTTTGAATAAAATT  489

seq1  TGTGGGTTGGGTATGGTTGTGCATGCCTTTAATTAGGAGCAGAATTAGGC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTTGGGTATGGTTGTGCATGCCTTTAATTAGGAGCAGAATTAGGC  539

seq1  AGATGTGACACCAGACTGGTCTACAAAGCAAGTTCCAGAATAGCCAAAGC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGACACCAGACTGGTCTACAAAGCAAGTTCCAGAATAGCCAAAGC  589

seq1  TGTTACACAGAGAAACCCTCAAAAAAAGAAAAAAAAAATCCTTTTTGGTA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACACAGAGAAACCCTCAAAAAAAGAAAAAAAAAATCCTTTTTGGTA  639

seq1  GTAATTCTAGCACCATTTGTATTTCTAACAAGCATAAGATAGTTGTATTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTCTAGCACCATTTGTATTTCTAACAAGCATAAGATAGTTGTATTT  689

seq1  ATCATATACATAAAGCAAATGTGTTCACTAATATTACTACTTAATTGTTT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATACATAAAGCAAATGTGTTCACTAATATTACTACTTAATTGTTT  739

seq1  TCATTTATTGTTAAAGTATGTTCAATTTTTCATATTTATATAGAATAATT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTATTGTTAAAGTATGTTCAATTTTTCATATTTATATAGAATAATT  789

seq1  TTGACATTAAAACTAAAATGAACGAACAGAATGAAAACTCTGGAGCTTCT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACATTAAAACTAAAATGAACGAACAGAATGAAAACTCTGGAGCTTCT  839

seq1  GAAATCAAAGGTAAGAAGCTAACAAAAATGTTTATTAACTACTAATTCAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCAAAGGTAAGAAGCTAACAAAAATGTTTATTAACTACTAATTCAA  889

seq1  TTTCATACCATTTAACTTTCTTCTCTTCTTATTTTTTTTTTTACAGAACC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATACCATTTAACTTTCTTCTCTTCTTATTTTTTTTTTTACAGAACC  939

seq1  AAATTTAGATTGTAAGGAAGAAGAAACTATGCAATTCAAAAAGAGCCAAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAGATTGTAAGGAAGAAGAAACTATGCAATTCAAAAAGAGCCAAA  989

seq1  GTCCTTCAATTTCTCATTGTCAGGTATAAACTTGGTCATTCCATCTGACT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTCAATTTCTCATTGTCAGGTATAAACTTGGTCATTCCATCTGACT  1039

seq1  TTCAATTTTATTTTGTTCTGTTTTACTTTACTTGTTTGTTTGAGCCTGGG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTTTATTTTGTTCTGTTTTACTTTACTTGTTTGTTTGAGCCTGGG  1089

seq1  TCTTACAAGGTACCCCTGTTTAGCCTGGAATTC  1127
      |||||||||||||||||||||||||||||||||
seq2  TCTTACAAGGTACCCCTGTTTAGCCTGGAATTC  1122