BAC Information

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BAC

Clone NameB6Ng01-316C19
Chromosome3 (Build37)
Map Location 76,841,173 - 76,842,323
singlet/doubletsinglet
Overlap genenone
Upstream geneFstl5, LOC100041625, LOC100041635
Downstream geneDnmt3a-ps1, EG626461
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316C19.bB6Ng01-316C19.g
ACCGA106635GA106636
length1,0861,157
definitionB6Ng01-316C19.b B6Ng01-316C19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaactgaggaatactgaatggctgaccctgccttaagaaatgt
tcaacatctttattcatccgggaattgcaaatcatgacccccctaatatt
ccacctctttccactgtgaatggctaatgacaaaaactattgtgacacct
gatgcttgcaaggatgtggggaaagagaaacactcctccattgctggggg
gatatctgcctgataacacgtttctggagtggtcagggggatttgcctgc
tgttccttttactacctgatgatctacctataccgctcctgtgcctgtgc
ccccaagatggtgcggggaactttaaggtcatatgttcccctatgttcaa
tcgcacctttgtgttattttaattatactggaaaccacccatatgtccct
cagtgtatgaatggatacggataatttggtacatttacacaattgggtac
taaacatctattaaatacaaagaatttatgaaattcttaggcaaatggat
ggatctggaggatatcatcctgagtgaggtaacccaatcacaaaagaaca
catatgatatgcactcactgacaagcagatattagctcagaagcttggaa
tacctaaaacaatttgcaaaacatatgaaactcaagaagaacactaaagt
gtggataattttagtctttcttagaaaagggggtacaaaataaccatgga
aagaattacagagactaagtgtggagcagagactgaactaatggccttcc
agagactggctaacctggggatctatcccttatacaaacaccaaacacag
acactgttgtggatgcaataagagcttgctgacaggagcctgatgtagct
gtatcctgagaggctgtgcaagtgcctgataaataagaagatgatgctca
cagcccatccattggatgaaggcacagagttttccatgaaggaactagag
aaattacccaaagaagctgaaggtggtttgcagcctgtcttaagttcagg
gttttcttattccctgcaccaaacatcatgaaccaagaagtcaagttggg
ggagggaatggtgtttatttcgtgttttcaccttcc
gaattcattgctgtgaaaattggttgttcaaaatagcaaacatttatttt
gctcacaggtcactgagacacatgaacacagctagcctggatacttgggc
catactgagtgcagacagagaagtgctgatgaactcttattttgctgact
ttgcatgaattctgttacatttttttgttctcagcataaatcattagact
ttctatcccattggttttcttatctcctgaaaagctggtctttatttcat
atcaaactaagtactctggggtcgtagcttatttggaggagtgatagcct
agcatgcatggaactctatgttcagtcctcaccattgagtaaacccgaca
catttgttctggcctcaatctctgttcttgtaaggtagaaacagaagaac
tagagtttaaaggttgtacttggccacactgaaagctcaaggccagtcca
caatacatagtagtgtcccgtcttaataaaatgaaacagcacacaattca
acaaaaccaactaatgaaacaaacattgtaagcatttaactcaggagtac
gtgagaaaggactttgcaagtggttaaaatacattactctgctccattaa
ttttggccacggcaaatgacaagacttttccacacttgaaaaacaaacca
agccttcacattgcacaaaaagtcacttatcaaaagtatgggaatataaa
agcaaatcttgtagattatagagtaaattgtagaataaaaatcagatata
tgatacaatttgcgaaacacatgaaactcaagaaaaacgaagaccaaagt
gtggacactgtgccccttcttagaattgggaacaaaacacccatggaagg
agttacagagacaaaggttggagttgagacgaaaggatagaccatctaga
gactgccacatctggagatccatcccataatctgcttccaaacgctgaca
ccattgcatacactagcagattttgctgaaaggacccagatacagcttgt
ctcttgtgagtctatgctggggcctagcaaacacagaagtggaatgctca
caagtcagcttattggaatggatccacagggtccccagtgaaggaagctg
gaaagtaccctaggaaccttggggggaatctgcatcttataggtgaacac
caatatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_76841173_76842323
seq2: B6Ng01-316C19.g_67_1223

seq1  GAATTCATTGCTGTGAAAATTGGTTGTTCAAAATAGCAAACATTTATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGCTGTGAAAATTGGTTGTTCAAAATAGCAAACATTTATTTT  50

seq1  GCTCACAGGTCACTGAGACACATGAACACAGCTAGCCTGGATACTTGGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACAGGTCACTGAGACACATGAACACAGCTAGCCTGGATACTTGGGC  100

seq1  CATACTGAGTGCAGACAGAGAAGTGCTGATGAACTCTTATTTTGCTGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTGAGTGCAGACAGAGAAGTGCTGATGAACTCTTATTTTGCTGACT  150

seq1  TTGCATGAATTCTGTTACATTTTTTTGTTCTCAGCATAAATCATTAGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATGAATTCTGTTACATTTTTTTGTTCTCAGCATAAATCATTAGACT  200

seq1  TTCTATCCCATTGGTTTTCTTATCTCCTGAAAAGCTGGTCTTTATTTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATCCCATTGGTTTTCTTATCTCCTGAAAAGCTGGTCTTTATTTCAT  250

seq1  ATCAAACTAAGTACTCTGGGGTCGTAGCTTATTTGGAGGAGTGATAGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAACTAAGTACTCTGGGGTCGTAGCTTATTTGGAGGAGTGATAGCCT  300

seq1  AGCATGCATGGAACTCTATGTTCAGTCCTCACCATTGAGTAAACCCGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGCATGGAACTCTATGTTCAGTCCTCACCATTGAGTAAACCCGACA  350

seq1  CATTTGTTCTGGCCTCAATCTCTGTTCTTGTAAGGTAGAAACAGAAGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTTCTGGCCTCAATCTCTGTTCTTGTAAGGTAGAAACAGAAGAAC  400

seq1  TAGAGTTTAAAGGTTGTACTTGGCCACACTGAAAGCTCAAGGCCAGTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTTTAAAGGTTGTACTTGGCCACACTGAAAGCTCAAGGCCAGTCCA  450

seq1  CAATACATAGTAGTGTCCCGTCTTAATAAAATGAAACAGCACACAATTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACATAGTAGTGTCCCGTCTTAATAAAATGAAACAGCACACAATTCA  500

seq1  ACAAAACCAACTAATGAAACAAACATTGTAAGCATTTAACTCAGGAGTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACCAACTAATGAAACAAACATTGTAAGCATTTAACTCAGGAGTAC  550

seq1  GTGAGAAAGGACTTTGCAAGTGGTTAAAATACATTACTCTGCTCCATTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAAAGGACTTTGCAAGTGGTTAAAATACATTACTCTGCTCCATTAA  600

seq1  TTTTGGCCACGGCAAATGACAAGACTTTTCCACACTTGAAAAACAAACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGCCACGGCAAATGACAAGACTTTTCCACACTTGAAAAACAAACCA  650

seq1  AGCCTTCACATTGCACAAAAAGTCACTTATCAAAAGTATGGGAATATAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTCACATTGCACAAAAAGTCACTTATCAAAAGTATGGGAATATAAA  700

seq1  AGCAAATCTTGTAGATTATAGAGTAAATTGTAGAATAAAAATCAGATATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATCTTGTAGATTATAGAGTAAATTGTAGAATAAAAATCAGATATA  750

seq1  TGATACAATTTGCGAAACACATGAAACTCAAGAAAAACGAAGACCAAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACAATTTGCGAAACACATGAAACTCAAGAAAAACGAAGACCAAAGT  800

seq1  GTGGACACTGTGCCCCTTCTTAGAATTGGGAACAAAACACCCATGGAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACACTGTGCCCCTTCTTAGAATTGGGAACAAAACACCCATGGAAGG  850

seq1  AGTTACAGAGACAAAGGTTGGAGTTGAGACGAAAGGATAGACCATCTAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACAGAGACAAAGGTTGGAGTTGAGACGAAAGGATAGACCATCTAGA  900

seq1  GACTGCCACATCTGGAGATCCATCCCATAATCTGCTTCCAAACGCTGACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCCACATCTGGAGATCCATCCCATAATCTGCTTCCAAACGCTGACA  950

seq1  CCATTGCATACACTAGCAAGATTTTGCTGAAAGGACCCAGATACAGC-TG  999
      ||||||||||||||||| ||||||||||||||||||||||||||||| ||
seq2  CCATTGCATACACTAGC-AGATTTTGCTGAAAGGACCCAGATACAGCTTG  999

seq1  TCTCTTGTGAGTCTATGCTGGGGCCTAGCAAACACAGAAGTGG-ATGCTC  1048
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCTCTTGTGAGTCTATGCTGGGGCCTAGCAAACACAGAAGTGGAATGCTC  1049

seq1  AC-AGTCAGC-TATTGG-ATGGAT-CACAGGGCCCCCAGTGGAGG-AGCT  1093
      || ||||||| |||||| |||||| ||||||| |||||||| ||| ||||
seq2  ACAAGTCAGCTTATTGGAATGGATCCACAGGGTCCCCAGTGAAGGAAGCT  1099

seq1  GGGAAAGTACCCAAGG-ACCT--GGGGGGATCTGCAATCTTATAGGTGGA  1140
       ||||||||||| ||| ||||  ||||| |||||| ||||||||||| ||
seq2  -GGAAAGTACCCTAGGAACCTTGGGGGGAATCTGC-ATCTTATAGGT-GA  1146

seq1  ACAACAATATG  1151
      ||| |||||||
seq2  ACACCAATATG  1157