BAC Information

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BAC

Clone NameB6Ng01-316F03
Chromosome3 (Build37)
Map Location 22,453,006 - 22,575,911
singlet/doubletdoublet
Overlap geneLOC100040378
Upstream gene7530428D23Rik, LOC100039465, LOC100040353, Tbl1xr1, LOC545506, LOC675593
Downstream geneLOC623751, LOC100039548
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316F03.bB6Ng01-316F03.g
ACCGA106745GA106746
length1,115935
definitionB6Ng01-316F03.b B6Ng01-316F03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,574,783 - 22,575,911)(22,453,006 - 22,453,736)
sequence
cttttgaattggctgatgggaagggaacaaaatatttcagtacccaggaa
tgatttccatgtgccactcttctaaagtctacatgacaatgtggggctct
agatgatcagcctatgttggatcatattttttaattaaaattaaacttca
ttgatctgtcagataatccagatgaagtttacagtattataaaatctgag
attaattctacaagaaaatttatactgtcatatactacatttttcagcta
tgataaaaccttttttcaaattttctttgaaaaaacattctatgaagtac
aaaaaatataaagatttatgtattttaaatttaacttatagaaaaaagtg
taaaatatctttaaagccctgaaaataacttatatgacataatttggaaa
cactctccaaattggtcaggataggttcctttttctcaccaaaaatacta
aagcttgacagataagtgaggtggtagttaagacataatcctggggttag
gaaaatttggtttagaacttgctatgctgccacattatatatagtctttg
ttaatttctgttgcctctcagaacactaaaatccttattaaaaggaagca
agaagatcatggtatattaaaacccccagggaagtctttgatggacttcc
aattaccaagtacctttcccatagcaatagaatgttatccttatagtggt
ttcacgtagtttcaggacaagatataataaaaactttgcttcccaacttc
ctttccaactaagcatgagtaaatcggtaagtttaagccagtgactcatg
agtaaaagtgtcattcatttccctgatcactgtctgcaatgttaaaggtg
ataaaggcttcctgagtcactagacaaagataacatcaactgatgatgaa
agagaaatgggagactcgagccccgggctaccttgccagcagagtcttgc
ccaacacccgcaaggcccacacaggactcccacgggaccctaagtcctcc
ggtgagtggacacagcgctgcccatcaatcgctcgacctgagactgcgta
catagggagcagctacccggctgatctggggcacagtcctttcgctcgaa
ctcgtgactcgagcc

gaattccagtccataaacctacgaacatggattagcacaccactctccac
cccacagctctgcctaattcctgagagggctgctcccaactgagacactt
aggaccccagcaagcccagtagccacaaggtctgtcctatttggctttga
gtttatactcttctttctggttcacatctttacctgcattcttggattgg
cactctactctccagcccagagctctacaaaatggcaatatcagaaccta
gctctcctactagagcaaaccctggatatcctaaaacacctcaagagcaa
gaccttaagttttatcttattaagatgagagaaagttttaaaaaggaaat
aaacaaatcccttaaataaatacaggaaaacagaataaaaaaggtaaaga
aaatgaaaaaaaaatgttcaaaacctaaaaatgaaaatagaatcaataaa
gaaaagaaaagagaagaggaactatagacacaagcatcaccaacagaata
caagagacaaaagacagaatctgatgtatagaagatacaatagaaggaat
tgatatgatatggccaaagaagataacaaatgtaaaacgtttttaactaa
aaacatccagaaatttttggggtcactaagtatatgatcttatcatctgc
aaatagtgatattttgtcttctttctttccaatttgtatccttttgactt
ccttttcttgccttattgctctagctataacttcaaatactatattaaat
agaaaaggagagggtgaccagccttttctagcctcttttagggggattgc
ttcaagtttctctccatttagtttgatgttggctatgggttttctgcata
ttgcctttactatgtttaggtatgggccttgaattcctgatctttccaag
acttttaacaacatgacaccccagagctcccaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_22574783_22575911
seq2: B6Ng01-316F03.b_51_1165 (reverse)

seq1  GGCTCGAGTCACGAG-TCGAGCGGAAGGGACTTGTGCCCCAGATCAGGCC  49
      ||||||||||||||| |||||| ||| |||| |||||||||||||||  |
seq2  GGCTCGAGTCACGAGTTCGAGC-GAAAGGAC-TGTGCCCCAGATCAG--C  46

seq1  CGGGTAGCCTGCTTCCCTATGTACCGCAGTCTCAAGTTCCGAGCGATTGG  99
      ||||||| |||| |||||||||| |||||||||| ||  ||||||||| |
seq2  CGGGTAG-CTGC-TCCCTATGTA-CGCAGTCTCAGGT--CGAGCGATT-G  90

seq1  ATTGGGGCAGGCGCTGTGTTCCACTCACCGGAGGACTTAGGGTCCCGTGG  149
      ||  ||||| |||||||| ||||||||||||||||||||||||||||| |
seq2  AT--GGGCA-GCGCTGTG-TCCACTCACCGGAGGACTTAGGGTCCCGT-G  135

seq1  GGAGTCCTGTGTGGGCCCTTGCGGGTGTTGGGCAAGACTCTGCTGGCAAG  199
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GGAGTCCTGTGTGGG-CCTTGCGGGTGTTGGGCAAGACTCTGCTGGCAAG  184

seq1  GTAGCCCGGGGCTCGAGTCTCCCATTTCTCTTTCATCATCAGTTGATGTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCCGGGGCTCGAGTCTCCCATTTCTCTTTCATCATCAGTTGATGTT  234

seq1  ATCTTTGTCTAGTGACTCAGGAAGCC-TTATCACCTTTAACATTGCAGAC  298
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATCTTTGTCTAGTGACTCAGGAAGCCTTTATCACCTTTAACATTGCAGAC  284

seq1  AGTGATCAGGGAAATGAATGACACTTTTACTCATGAGTCACTGGCTTAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATCAGGGAAATGAATGACACTTTTACTCATGAGTCACTGGCTTAAA  334

seq1  CTTACCGATTTACTCATGCTTAGTTGGAAAGGAAGTTGGGAAGCAAAGTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCGATTTACTCATGCTTAGTTGGAAAGGAAGTTGGGAAGCAAAGTT  384

seq1  TTTATTATATCTTGTCCTGAAACTACGTGAAACCACTATAAGGATAACAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTATATCTTGTCCTGAAACTACGTGAAACCACTATAAGGATAACAT  434

seq1  TCTATTGCTATGGGAAAGGTACTTGGTAATTGGAAGTCCATCAAAGACTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTGCTATGGGAAAGGTACTTGGTAATTGGAAGTCCATCAAAGACTT  484

seq1  CCCTGGGGGTTTTAATATACCATGATCTTCTTGCTTCCTTTTAATAAGGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGGGTTTTAATATACCATGATCTTCTTGCTTCCTTTTAATAAGGA  534

seq1  TTTTAGTGTTCTGAGAGGCAACAGAAATTAACAAAGACTATATATAATGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTGTTCTGAGAGGCAACAGAAATTAACAAAGACTATATATAATGT  584

seq1  GGCAGCATAGCAAGTTCTAAACCAAATTTTCCTAACCCCAGGATTATGTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCATAGCAAGTTCTAAACCAAATTTTCCTAACCCCAGGATTATGTC  634

seq1  TTAACTACCACCTCACTTATCTGTCAAGCTTTAGTATTTTTGGTGAGAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTACCACCTCACTTATCTGTCAAGCTTTAGTATTTTTGGTGAGAAA  684

seq1  AAGGAACCTATCCTGACCAATTTGGAGAGTGTTTCCAAATTATGTCATAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACCTATCCTGACCAATTTGGAGAGTGTTTCCAAATTATGTCATAT  734

seq1  AAGTTATTTTCAGGGCTTTAAAGATATTTTACACTTTTTTCTATAAGTTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTATTTTCAGGGCTTTAAAGATATTTTACACTTTTTTCTATAAGTTA  784

seq1  AATTTAAAATACATAAATCTTTATATTTTTTGTACTTCATAGAATGTTTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAAATACATAAATCTTTATATTTTTTGTACTTCATAGAATGTTTT  834

seq1  TTCAAAGAAAATTTGAAAAAAGGTTTTATCATAGCTGAAAAATGTAGTAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGAAAATTTGAAAAAAGGTTTTATCATAGCTGAAAAATGTAGTAT  884

seq1  ATGACAGTATAAATTTTCTTGTAGAATTAATCTCAGATTTTATAATACTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGTATAAATTTTCTTGTAGAATTAATCTCAGATTTTATAATACTG  934

seq1  TAAACTTCATCTGGATTATCTGACAGATCAATGAAGTTTAATTTTAATTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTCATCTGGATTATCTGACAGATCAATGAAGTTTAATTTTAATTA  984

seq1  AAAAATATGATCCAACATAGGCTGATCATCTAGAGCCCCACATTGTCATG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATGATCCAACATAGGCTGATCATCTAGAGCCCCACATTGTCATG  1034

seq1  TAGACTTTAGAAGAGTGGCACATGGAAATCATTCCTGGGTACTGAAATAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTTTAGAAGAGTGGCACATGGAAATCATTCCTGGGTACTGAAATAT  1084

seq1  TTTGTTCCCTTCCCATCAGCCAATTCAAAAG  1129
      |||||||||||||||||||||||||||||||
seq2  TTTGTTCCCTTCCCATCAGCCAATTCAAAAG  1115


seq1: chr3_22453006_22453736
seq2: B6Ng01-316F03.g_66_796

seq1  GAATTCCAGTCCATAAACCTACGAACATGGATTAGCACACCACTCTCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTCCATAAACCTACGAACATGGATTAGCACACCACTCTCCAC  50

seq1  CCCACAGCTCTGCCTAATTCCTGAGAGGGCTGCTCCCAACTGAGACACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGCTCTGCCTAATTCCTGAGAGGGCTGCTCCCAACTGAGACACTT  100

seq1  AGGACCCCAGCAAGCCCAGTAGCCACAAGGTCTGTCCTATTTGGCTTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCCCAGCAAGCCCAGTAGCCACAAGGTCTGTCCTATTTGGCTTTGA  150

seq1  GTTTATACTCTTCTTTCTGGTTCACATCTTTACCTGCATTCTTGGATTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATACTCTTCTTTCTGGTTCACATCTTTACCTGCATTCTTGGATTGG  200

seq1  CACTCTACTCTCCAGCCCAGAGCTCTACAAAATGGCAATATCAGAACCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTACTCTCCAGCCCAGAGCTCTACAAAATGGCAATATCAGAACCTA  250

seq1  GCTCTCCTACTAGAGCAAACCCTGGATATCCTAAAACACCTCAAGAGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCCTACTAGAGCAAACCCTGGATATCCTAAAACACCTCAAGAGCAA  300

seq1  GACCTTAAGTTTTATCTTATTAAGATGAGAGAAAGTTTTAAAAAGGAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTAAGTTTTATCTTATTAAGATGAGAGAAAGTTTTAAAAAGGAAAT  350

seq1  AAACAAATCCCTTAAATAAATACAGGAAAACAGAATAAAAAAGGTAAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAATCCCTTAAATAAATACAGGAAAACAGAATAAAAAAGGTAAAGA  400

seq1  AAATGAAAAAAAAATGTTCAAAACCTAAAAATGAAAATAGAATCAATAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAAAAAAAATGTTCAAAACCTAAAAATGAAAATAGAATCAATAAA  450

seq1  GAAAAGAAAAGAGAAGAGGAACTATAGACACAAGCATCACCAACAGAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAAAAGAGAAGAGGAACTATAGACACAAGCATCACCAACAGAATA  500

seq1  CAAGAGACAAAAGACAGAATCTGATGTATAGAAGATACAATAGAAGGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGACAAAAGACAGAATCTGATGTATAGAAGATACAATAGAAGGAAT  550

seq1  TGATATGATATGGCCAAAGAAGATAACAAATGTAAAACGTTTTTAACTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATGATATGGCCAAAGAAGATAACAAATGTAAAACGTTTTTAACTAA  600

seq1  AAACATCCAGAAATTTTTGGGGTCACTAAGTATATGATCTTATCATCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCCAGAAATTTTTGGGGTCACTAAGTATATGATCTTATCATCTGC  650

seq1  AAATAGTGATATTTTGTCTTCTTTCTTTCCAATTTGTATCCTTTTGACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTGATATTTTGTCTTCTTTCTTTCCAATTTGTATCCTTTTGACTT  700

seq1  CCTTTTCTTGCCTTATTGCTCTAGCTATAAC  731
      |||||||||||||||||||||||||||||||
seq2  CCTTTTCTTGCCTTATTGCTCTAGCTATAAC  731


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