BAC Information

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BAC

Clone NameB6Ng01-316F11
Chromosome3 (Build37)
Map Location 92,002,488 - 92,003,660
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042463, Pglyrp3, EG619750, Lor, A030004J04Rik
Downstream geneSprr2a, LOC100042999, LOC545543, LOC100043005, LOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316F11.bB6Ng01-316F11.g
ACCGA106761GA106762
length1,1791,161
definitionB6Ng01-316F11.b B6Ng01-316F11.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatttataggttacagtgtctacaatagacaccctgattttcaat
cttttgtgtgcattcactgtgatgtgcttatatatgtgtgcatttactgt
gaagtgcttatatatgtgtgtatgtctgtgtgtgcatgtgggagcgggag
gtatatggtgcatgtacatgaatgtacaagcacatgttctggtgaaagtt
agagccgagtattggatgcatttctctatccatctccactttactgcttg
gcttggctttttgagatgcttacattttatataactgtgagacctatgtc
aaaagccaataactttacatacaaactgcattaatcttaattaagctaga
gactttattcagatacattcacatttttctaatgtcttctttctatttca
agatccaatttagggtctccccttgcatttacttggaatttctttgccag
tttcttaagttatctttttttattttcttagaataattcttttttttctt
ttggttagatattttcttatttacattttaaatgttatcctctttcctag
tttcccctccaaaaatcccctatccccttcccttgctccaaaagccaaat
actcccattcctggccctggcattcccttatattggggcatagattaggt
tatctttttatttaataactttaagacacttgaatatttcagatattgtt
ttgaattatagataatattgcaaaatcatctacagaggcacttgctgagt
tcaagcctcagctacttactaatctatcaagataggggagcattggcttc
ttaattgagcatctcatacttctgtttcttcatctttaatttgggggaaa
taaccatgataggcactgttaaaatttagtggttttttttttgtgtgtgt
gtaatacaacatgcagaattatatttaaatgggatggctagcctgcttat
gatttcaaataatacttttatagttcacaaaggtctgtgatgtaggaagc
aagggaattgggaaaatcatgaatatgaatacttgcccacctctaggtca
tttgcacatttatgatagttttaagtatgtttgtcgtaggtagaaagagc
ttgaccttaagcctgaaggttgtgttagagattcatttcaacttggtaag
aactctggatgacctagaaaggtttaccc
gaattctcacccgaggaataccgaatggctgataatcacctgaaaaagtg
ctcagcatccttaatcatcagagaaatgcaatcaaaacaaccctgagatt
ccatctcataccagtcagaatggctaagatcaaaaattcaggtgacagca
gatgctggctaggatgtggagaaagaggaacactcctccattgttggtgg
gattgcaagcttatacaaccactccggaaatcagtctggcagttactcag
aaaattggacatagtactaccagagcatccagcaatacctctcctgggca
tatatccagaagatgtcccaaccggtaagtaggacacatgctctactatg
ttcatagcagccttatttataatagccagaagctggaaagaacccagatg
cccccaacagaggaatggatacaaaaaatgtggtacatttacacaatgga
gtactactcagctattaaaaagaatgaatttatgaaattcctaggcaaat
ggttggacctggaggggatcatcctgagtgaggtaacacaatcacaaaag
aactcaaatgatatgtactcactgataagtggatattagcccagaaactt
agtatatcagagatataagacacaatttgccaaacacatgaaactgaaga
agaacgaagactaaagtgtggacactttgccccttcttagagttggaaat
aaacacccatggaaggagttacagagacaaagtttggagctgagacaaaa
ggatggaccatctagaggctgccatatccagggatccatcccataattag
cctccaaatgatgacaccattgcatacactagcgagcgttggctgaaagg
accctgacatagctgaatcttgtgagactaggccggggcctagcaaacac
agaagtggatgctcacagtcagctattggatggagcacaggtccccaatg
gaggagctagagaaagtatccaaggagctaaagagatctgcaaccctata
ggtggaacaacactattgaactaaccagtacccagatctctgactctagc
tgcatatgtatcaaagattgcctagtggccatcactgaagaagaggccat
gtacacgcaactaatgccagtcaggcatgcagtcaaaaaatgggaatggc
tttggatagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_92002488_92003660
seq2: B6Ng01-316F11.b_44_1222

seq1  GAATTCATTTATAGGTTACAGTGTCTACAATAGACACCCTGATTTTCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTATAGGTTACAGTGTCTACAATAGACACCCTGATTTTCAAT  50

seq1  CTTTTGTGTGCATTCACTGTGATGTGCTTATATATGTGTGCATTTACTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTGTGCATTCACTGTGATGTGCTTATATATGTGTGCATTTACTGT  100

seq1  GAAGTGCTTATATATGTGTGTATGTCTGTGTGTGCATGTGGGAGCGGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGCTTATATATGTGTGTATGTCTGTGTGTGCATGTGGGAGCGGGAG  150

seq1  GTATATGGTGCATGTACATGAATGTACAAGCACATGTTCTGGTGAAAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATGGTGCATGTACATGAATGTACAAGCACATGTTCTGGTGAAAGTT  200

seq1  AGAGCCGAGTATTGGATGCATTTCTCTATCCATCTCCACTTTACTGCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCGAGTATTGGATGCATTTCTCTATCCATCTCCACTTTACTGCTTG  250

seq1  GCTTGGCTTTTTGAGATGCTTACATTTTATATAACTGTGAGACCTATGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGCTTTTTGAGATGCTTACATTTTATATAACTGTGAGACCTATGTC  300

seq1  AAAAGCCAATAACTTTACATACAAACTGCATTAATCTTAATTAAGCTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCAATAACTTTACATACAAACTGCATTAATCTTAATTAAGCTAGA  350

seq1  GACTTTATTCAGATACATTCACATTTTTCTAATGTCTTCTTTCTATTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTATTCAGATACATTCACATTTTTCTAATGTCTTCTTTCTATTTCA  400

seq1  AGATCCAATTTAGGGTCTCCCCTTGCATTTACTTGGAATTTCTTTGCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCAATTTAGGGTCTCCCCTTGCATTTACTTGGAATTTCTTTGCCAG  450

seq1  TTTCTTAAGTTATCTTTTTTTATTTTCTTAGAATAATTCTTTTTTTTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAAGTTATCTTTTTTTATTTTCTTAGAATAATTCTTTTTTTTCTT  500

seq1  TTGGTTAGATATTTTCTTATTTACATTTTAAATGTTATCCTCTTTCCTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTAGATATTTTCTTATTTACATTTTAAATGTTATCCTCTTTCCTAG  550

seq1  TTTCCCCTCCAAAAATCCCCTATCCCCTTCCCTTGCTCCAAAAGCCAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCTCCAAAAATCCCCTATCCCCTTCCCTTGCTCCAAAAGCCAAAT  600

seq1  ACTCCCATTCCTGGCCCTGGCATTCCCTTATATTGGGGCATAGATTAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCATTCCTGGCCCTGGCATTCCCTTATATTGGGGCATAGATTAGGT  650

seq1  TATCTTTTTATTTAATAACTTTAAGACACTTGAATATTTCAGATATTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTTTATTTAATAACTTTAAGACACTTGAATATTTCAGATATTGTT  700

seq1  TTGAATTATAGATAATATTGCAAAATCATCTACAGAGGCACTTGCTGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTATAGATAATATTGCAAAATCATCTACAGAGGCACTTGCTGAGT  750

seq1  TCAAGCCTCAGCTACTTACTAATCTATCAAGATAGGGGAGCATTGGCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCCTCAGCTACTTACTAATCTATCAAGATAGGGGAGCATTGGCTTC  800

seq1  TTAATTGAGCATCTCATACTTCTGTTTCTTCATCTTTAATTTGGGGGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGAGCATCTCATACTTCTGTTTCTTCATCTTTAATTTGGGGGAAA  850

seq1  TAACCATGATAGGCACTGTTAAAATTTAGTGG-TTTTTTTTTGTGTGTGT  899
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TAACCATGATAGGCACTGTTAAAATTTAGTGGTTTTTTTTTTGTGTGTGT  900

seq1  GTAATACAACATGCAGAATTATATTTAAATGGGATGGCTAGCCTGCTTAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATACAACATGCAGAATTATATTTAAATGGGATGGCTAGCCTGCTTAT  950

seq1  GATTTCAAAT-ATAC-TTTATAGTTCACAAAGGTCTGTGATGTAGGAAGC  997
      |||||||||| |||| ||||||||||||||||||||||||||||||||||
seq2  GATTTCAAATAATACTTTTATAGTTCACAAAGGTCTGTGATGTAGGAAGC  1000

seq1  AAGGGA--TTGGAAATTCATGAATATG-ATACTTGCCCA-CTCTAGGTCC  1043
      ||||||  | ||||| ||||||||||| ||||||||||| ||||||||| 
seq2  AAGGGAATTGGGAAAATCATGAATATGAATACTTGCCCACCTCTAGGTCA  1050

seq1  TTTGCACATTTAATGAATAGTTTTTAAAGTATGTTTGTCGTAAGTAGAAA  1093
      ||||||||||| ||| ||||||||  |||||||||||||||| |||||||
seq2  TTTGCACATTT-ATG-ATAGTTTT--AAGTATGTTTGTCGTAGGTAGAAA  1096

seq1  GAGCCTGACATTTAAGCTG-AGGTGGTG-TAGAGAATCATTTCAAACTGG  1141
      |||| |||| || |  ||| |||| ||| |||||| |||||||||  |||
seq2  GAGCTTGACCTTAAGCCTGAAGGTTGTGTTAGAGATTCATTTCAACTTGG  1146

seq1  AGAAGACTCTTGATGACCTAGAAAAG-TTACCC  1173
        |  ||||| ||||||||||||| | ||||||
seq2  TAAGAACTCTGGATGACCTAGAAAGGTTTACCC  1179