BAC Information

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BAC

Clone NameB6Ng01-316H06
Chromosome3 (Build37)
Map Location 71,801,773 - 71,949,835
singlet/doubletdoublet
Overlap geneLOC100041459
Upstream geneEG667377, LOC667385
Downstream gene2010204N08Rik, Slitrk3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316H06.bB6Ng01-316H06.g
ACCGA106847GA106848
length342979
definitionB6Ng01-316H06.b B6Ng01-316H06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,949,494 - 71,949,835)(71,801,773 - 71,802,756)
sequence
tttcctttgtgttccttgatatacttataaggtaaatctaaccttccctt
ctaatttttttttcatcctggtgtttatgacaacagaaagtgaattagag
tatttgttataagtcttactgcttttgatattgcaaggtattctcagaaa
ctctggcttctttccatttttgttttatgtttactttttatttctgtcta
tggtgtgtgtgaatgtatgtatgtatgtatgtatgtatgtatgtttgtat
gtatgtatgcatacagatgtgtattcacaagtatatgcatgtacttgtag
attccatttaggtcattggcacctctagagttaaaggtacat
gaattccaagaagaaatttgaaggtggagaagaagaagaagaagaagaag
aagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaa
gaagaagaagaagaagaagaagaagaagaagaacaagaagaacaagaaga
acaagaagaacaagaagaagaacaagaagaagaagaacaagaagaagaag
aagaagacactacagtcaaaatctcatctattcttaacacatttcttcca
tgaaaacagtattatggacaaagatgtaagttcttgtataagcactttta
ttttttgaatcttattgcctcctggaaatataatttatcaaaagcaatta
tatgaaaaaaattaaacactaaagtaaggatctatgagttttatcgaatc
tgcagggattgatgaatacattttccagccagaactgtttttgtaaaatt
gaaatacagtttttttctcatataagatatcctcattataaatataacca
aatgtcattaggaggtattgtattgctctgtttatcctcatttgtctgct
tgtcttagaaaagtattgttgggttttctccttagtccatgagctatcta
gtgttaggttcttggtcagataagcagtgcctcgtatgattatacctcat
gaagtaggccttaagtcaaacaagatatttgtcagttactttcaccacag
tctttgtgttactattgcagtaacacaccttacaggaatgacaccattat
gaatcaaaacatttttgtctgagtggatgcttatgtttctgcttaagatg
ctattatgtagctgtgaagactgtgtatgtgtaccagctcaattcactat
gttcaatgagttgcttagtgttggcttcagcaatggggacatgaaatcag
agtgtggaaggaaacctttacacttagtaacattgagagtagtttgggat
ttccatggacttctttggccaaagatgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_71949494_71949835
seq2: B6Ng01-316H06.b_51_392 (reverse)

seq1  ATGTTCCTTTAACTCTAGAGGTGCCAATGACCTCACTGGAATCTACAAGT  50
      |||| |||||||||||||||||||||||||||| | ||||||||||||||
seq2  ATGTACCTTTAACTCTAGAGGTGCCAATGACCTAAATGGAATCTACAAGT  50

seq1  ACATGCATATACTTGTGAATACACATCTGTCTGCATACATACATACAAAC  100
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ACATGCATATACTTGTGAATACACATCTGTATGCATACATACATACAAAC  100

seq1  ATACATACATACATACATACATACATACATTCACACACACCATAGACAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATACATACATACATACATACATACATTCACACACACCATAGACAGA  150

seq1  AATAAAAAGTAAACATAAAACAAAAATGGAAAGAAGCCAGAGTTTCTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAAGTAAACATAAAACAAAAATGGAAAGAAGCCAGAGTTTCTGAG  200

seq1  AATACCTTGCAATATCAAAAGCAGTAAGACTTATAACAAATACTCTAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCTTGCAATATCAAAAGCAGTAAGACTTATAACAAATACTCTAATT  250

seq1  CACTTTCTGTTGTCATAAACACCAGGATGAAAAAAAAATTAGAAGGGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTCTGTTGTCATAAACACCAGGATGAAAAAAAAATTAGAAGGGAAG  300

seq1  GTTAGATTTACCTTATAAGTATATCAAGGAACACAAAGGAAA  342
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGATTTACCTTATAAGTATATCAAGGAACACAAAGGAAA  342

seq1: chr3_71801773_71802756
seq2: B6Ng01-316H06.g_65_1043

seq1  GAATTCCAAGAAGAAA-AAGAAGGTGGAGAAGAAGAAGAAGAAGAAGAAG  49
      ||||||||||||||||   ||||||||   ||||||||||||||||||||
seq2  GAATTCCAAGAAGAAATTTGAAGGTGG---AGAAGAAGAAGAAGAAGAAG  47

seq1  AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA  97

seq1  GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAACAAGAAGAACAAGA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAACAAGAAGAACAAGA  147

seq1  AGAACAAGAAGAACAAGAAGAAGAACAAGAAGAAGAAGAACAAGAAGAAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAAGAAGAACAAGAAGAAGAACAAGAAGAAGAAGAACAAGAAGAAG  197

seq1  AAGAAGAAGACACTACAGTCAAAATCTCATCTATTCTTAACACATTTCTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAGACACTACAGTCAAAATCTCATCTATTCTTAACACATTTCTT  247

seq1  CCATGAAAACAGTATTATGGACAAAGATGTAAGTTCTTGTATAAGCACTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAAAACAGTATTATGGACAAAGATGTAAGTTCTTGTATAAGCACTT  297

seq1  TTATTTTTTGAATCTTATTGCCTCCTGGAAATATAATTTATCAAAAGCAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTTGAATCTTATTGCCTCCTGGAAATATAATTTATCAAAAGCAA  347

seq1  TTATATGAAAAAAATTAAACACTAAAGTAAGGATCTATGAGTTTTATCGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGAAAAAAATTAAACACTAAAGTAAGGATCTATGAGTTTTATCGA  397

seq1  ATCTGCAGGGATTGATGAATACATTTTCCAGCCAGAACTGTTTTTGTAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCAGGGATTGATGAATACATTTTCCAGCCAGAACTGTTTTTGTAAA  447

seq1  ATTGAAATACAGTTTTTTTCTCATATAAGATATCCTCATTATAAATATAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAATACAGTTTTTTTCTCATATAAGATATCCTCATTATAAATATAA  497

seq1  CCAAATGTCATTAGGAGGTATTGTATTGCTCTGTTTATCCTCATTTGTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGTCATTAGGAGGTATTGTATTGCTCTGTTTATCCTCATTTGTCT  547

seq1  GCTTGTCTTAGAAAAGTATTGTTGGGTTTTCTCCTTAGTCCATGAGCTAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTCTTAGAAAAGTATTGTTGGGTTTTCTCCTTAGTCCATGAGCTAT  597

seq1  CTAGTGTTAGGTTCTTGGTCAGATAAGCAGTGCCTCGTATGATTATACCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGTTAGGTTCTTGGTCAGATAAGCAGTGCCTCGTATGATTATACCT  647

seq1  CATGAAGTAGGCCTTAAGTCAAACAAGATATTTGTCAGTTACTTTCACCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGTAGGCCTTAAGTCAAACAAGATATTTGTCAGTTACTTTCACCA  697

seq1  CAGTCTTTGTGTTACTATTGCAGTAACACACCTTACAGGAATGACACCAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTTGTGTTACTATTGCAGTAACACACCTTACAGGAATGACACCAT  747

seq1  TATGAATCAAAACATTTTTGTCTGAGTGGATGCTTATGTTTCTGCTTAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATCAAAACATTTTTGTCTGAGTGGATGCTTATGTTTCTGCTTAAG  797

seq1  ATGCTATTATGTAGCTGTGAAGACTGTGTATGTGTACCAGCTCAATTCAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATTATGTAGCTGTGAAGACTGTGTATGTGTACCAGCTCAATTCAC  847

seq1  TATGTTCAATGAGTTGCTTAGTTGTTGGCTTCAGCAATGGGGACATGAAA  899
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TATGTTCAATGAGTTGCTTAG-TGTTGGCTTCAGCAATGGGGACATGAAA  896

seq1  TCAGAGTGTGGAAGGAAACCTTTACACTTAGTAACATTGAGAGTAGTTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCAGAGTGTGGAAGGAAACCTTTACACTTAGTAACATTGAGAGTAGTTTG  946

seq1  GGATTTCCATGGGACTTCTTTGGCCAAAAGATGTA  984
      |||||||||| |||||||||||||| |||||||||
seq2  GGATTTCCAT-GGACTTCTTTGGCC-AAAGATGTA  979