BAC Information

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BAC

Clone NameB6Ng01-316K12
Chromosome3 (Build37)
Map Location 75,372,423 - 75,502,782
singlet/doubletdoublet
Overlap geneSerpini1
Upstream geneLOC100041551, EG667459, BC050789, Serpini2, Wdr49, Pdcd10
Downstream geneGolph4, Fstl5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316K12.bB6Ng01-316K12.g
ACCGA106998GA106999
length1,1751,115
definitionB6Ng01-316K12.b B6Ng01-316K12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,501,609 - 75,502,782)(75,372,423 - 75,373,541)
sequence
gaattccccatgggatttgaccttgtgaattattgtaagatttaactgtt
gactaaaatgtcagccaggattttcagtttgaaaaagcaatgaggggtgc
tttactgaataaaatcttccttatcttaccacctgggtcacgaatgtgaa
ggagattactaaaattcaaagcatataagggcaatatggtgttctattta
gaatttattcacttaatgaatcacagtgatggatttgttaatagtgaact
gtgagatgccataaattttaaaatataaagatgaatgggtgaaattatat
tactggaatacatttaaattttaagtacttattcctaagtaaaagaaaat
gctgtcttgggaaagctagctaggatacagaacatgtaaaatgttaactg
ttgctgtgcaaactcggcactagctgttgagcagagtagaaaagttttca
aaagacaggagtagtagggccagtaaaatatattcttttcaagaggggaa
gggcaaatgtaaatataaattatgatagccagtcatgagtttttaagtgt
taaaagagacatgtactaaacacatggttcctggacttagtaaggctgtg
cttggagcttattttatggaaaattagaaaacagtgctgatttcaaagtc
tagaggctgtaaggatggttctggagttctcagcacattctgatctctca
gaggatactagtttggttcccagcacccttggcaagggcacacacacaac
caaccacttgtaactccagttccagaagatttgacacccttctttgacct
ccaggggcaacaaaaatcacacatgtgggcacactacaaatgagagatgg
acaatagattgaaggactcgtggaatgtttaatgttactggcaagaatat
gagaggtaaaaaggagaagtaaattgtaaataaaaataaaacccacattc
atttgatatgaaacatatcaaatatagaaatgaaaaataaaagtgtcaca
tgccctatctataaaagaatacagtagggccagaacatgaaccactagaa
tggactcccagcacaaaacaaaaataatcagggggtgtggatcagaacaa
gtgaatcctgagctctgtcagcctagcagccctagttgaatcagtagctt
ccgaggttcttatgctaaaacctgt

gaattccaggacagccagggctatacagagaaaccctgtcttaaaacaaa
acaaaacaaacaaacaaacaaaaaagagaaacaatggaaattaagttaga
actagaaaatctgaagacaaactggaaaagcaaagacatataaacaaact
atcttaagaaataacctaacacaaccaagtagaatttaaccacgattact
cttgactccatattgaggctgtctcaagcaataaacaaaacaataataaa
tacccataatactttcataatcataattttagcaagctaggatgataatt
ttctcaacttcttaattttattttttactttattattaaaaatattttga
aataaattaaaacacacacacacaaaattagccagacccaaatactatac
aagttgattaagttacggcagttagaactgtcattttaaaaggaagctgt
gaagctccacattaattttatgtacttacccaccactaaaagaaaaaaac
cattttccattgcttgtatccacttttcccttattctcttatatttgctt
ttcttcatgttatactgtatatataatgtgcatttgtatacatattactg
actagattctacatgagacagaaaatgtcaagtttttaaaagaacaaatt
tatataaacgccagtgctaaaactatattaatgatgagggactaaatgca
gtttcatagtatctggcatgaacaagaatatagaacctctctcaatttgg
tcgcctgtttattgacttaaagaatctgctcaaaagtgcaaatagaaaat
ttcttgattagaaacaaataataaatgttatactatcagttgaaatgaat
tttgtatatacgaaaaccctaatatatacgaatatgtgttgtatatacga
acacatacacacaccacaacttattagaataaacaaatgcagaacgaatt
cagatacaagaccagtataaaattgaggtggaatgaggagactgctacgg
agttaaagtgcttgatgcaagcactttggactggtgttcagttcagaact
cacttaaaaccttaagatgatagtgcctattctagaattcagcattagag
taaaatagaatcaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_75501609_75502782
seq2: B6Ng01-316K12.b_45_1219 (reverse)

seq1  ACAGGTTTTACCAT-AGAACCT-GGAGCTTACTGATTCAACTAGGCTGGC  48
      |||||||||| ||| ||||||| |||   ||||||||||||||||   ||
seq2  ACAGGTTTTAGCATAAGAACCTCGGAAGCTACTGATTCAACTAGGGCTGC  50

seq1  TA-GCTGACAGAGCTCAGGGATCAACTTG-TCTGAATCCACACCCCCTGA  96
      || |||||||||||||| ||||  ||||| |||| |||||||||||||||
seq2  TAGGCTGACAGAGCTCA-GGATTCACTTGTTCTG-ATCCACACCCCCTGA  98

seq1  TTATTTATG-TTTGTGCTGGGAGTCCAATTCTAGT-GTTCATGTTCTGGC  144
      |||||| || |||||||||||||||| |||||||| ||||||||||||||
seq2  TTATTTTTGTTTTGTGCTGGGAGTCC-ATTCTAGTGGTTCATGTTCTGGC  147

seq1  CCTACTGTATTCTTTTATAGATAGGGCATGTTGACACCTTTTATTTTTTC  194
      |||||||||||||||||||||||||||||| ||||| |||||| ||||||
seq2  CCTACTGTATTCTTTTATAGATAGGGCATG-TGACA-CTTTTA-TTTTTC  194

seq1  ATTTCTATATTTGATATGTTTCATATCAAATGAATGT-GGTTTTATTTTT  243
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATTTCTATATTTGATATGTTTCATATCAAATGAATGTGGGTTTTATTTTT  244

seq1  ATTTACAATTTACTTCTCCTTTTTACCTCTCATATTCTTGCCAGTAACAT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACAATTTACTTCTCCTTTTTACCTCTCATATTCTTGCCAGTAACAT  294

seq1  TAAACATTCCACGAGTCCTTCAATCTATTGTCCATCTCTCATTTGTAGTG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATTCCACGAGTCCTTCAATCTATTGTCCATCTCTCATTTGTAGTG  344

seq1  TGCCCACATGTGTGATTTTTGTTGCCCCTGGAGGTCAAAGAAGGGTGTCA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCACATGTGTGATTTTTGTTGCCCCTGGAGGTCAAAGAAGGGTGTCA  394

seq1  AATCTTCTGGAACTGGAGTTACAAGTGGTTGGTTGTGTGTGTGCCCTTGC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTCTGGAACTGGAGTTACAAGTGGTTGGTTGTGTGTGTGCCCTTGC  444

seq1  CAAGGGTGCTGGGAACCAAACTAGTATCCTCTGAGAGATCAGAATGTGCT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGTGCTGGGAACCAAACTAGTATCCTCTGAGAGATCAGAATGTGCT  494

seq1  GAGAACTCCAGAACCATCCTTACAGCCTCTAGACTTTGAAATCAGCACTG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACTCCAGAACCATCCTTACAGCCTCTAGACTTTGAAATCAGCACTG  544

seq1  TTTTCTAATTTTCCATAAAATAAGCTCCAAGCACAGCCTTACTAAGTCCA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAATTTTCCATAAAATAAGCTCCAAGCACAGCCTTACTAAGTCCA  594

seq1  GGAACCATGTGTTTAGTACATGTCTCTTTTAACACTTAAAAACTCATGAC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCATGTGTTTAGTACATGTCTCTTTTAACACTTAAAAACTCATGAC  644

seq1  TGGCTATCATAATTTATATTTACATTTGCCCTTCCCCTCTTGAAAAGAAT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTATCATAATTTATATTTACATTTGCCCTTCCCCTCTTGAAAAGAAT  694

seq1  ATATTTTACTGGCCCTACTACTCCTGTCTTTTGAAAACTTTTCTACTCTG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTACTGGCCCTACTACTCCTGTCTTTTGAAAACTTTTCTACTCTG  744

seq1  CTCAACAGCTAGTGCCGAGTTTGCACAGCAACAGTTAACATTTTACATGT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACAGCTAGTGCCGAGTTTGCACAGCAACAGTTAACATTTTACATGT  794

seq1  TCTGTATCCTAGCTAGCTTTCCCAAGACAGCATTTTCTTTTACTTAGGAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATCCTAGCTAGCTTTCCCAAGACAGCATTTTCTTTTACTTAGGAA  844

seq1  TAAGTACTTAAAATTTAAATGTATTCCAGTAATATAATTTCACCCATTCA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTACTTAAAATTTAAATGTATTCCAGTAATATAATTTCACCCATTCA  894

seq1  TCTTTATATTTTAAAATTTATGGCATCTCACAGTTCACTATTAACAAATC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATATTTTAAAATTTATGGCATCTCACAGTTCACTATTAACAAATC  944

seq1  CATCACTGTGATTCATTAAGTGAATAAATTCTAAATAGAACACCATATTG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACTGTGATTCATTAAGTGAATAAATTCTAAATAGAACACCATATTG  994

seq1  CCCTTATATGCTTTGAATTTTAGTAATCTCCTTCACATTCGTGACCCAGG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTATATGCTTTGAATTTTAGTAATCTCCTTCACATTCGTGACCCAGG  1044

seq1  TGGTAAGATAAGGAAGATTTTATTCAGTAAAGCACCCCTCATTGCTTTTT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAGATAAGGAAGATTTTATTCAGTAAAGCACCCCTCATTGCTTTTT  1094

seq1  CAAACTGAAAATCCTGGCTGACATTTTAGTCAACAGTTAAATCTTACAAT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTGAAAATCCTGGCTGACATTTTAGTCAACAGTTAAATCTTACAAT  1144

seq1  AATTCACAAGGTCAAATCCCATGGGGAATTC  1174
      |||||||||||||||||||||||||||||||
seq2  AATTCACAAGGTCAAATCCCATGGGGAATTC  1175


seq1: chr3_75372423_75373541
seq2: B6Ng01-316K12.g_68_1182

seq1  GAATTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTTAAAACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTTAAAACAAA  50

seq1  ACAAAACAAACAAACAAACAAAAAAGAGAAACAATGGAAATTAAGTTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACAAACAAACAAACAAAAAAGAGAAACAATGGAAATTAAGTTAGA  100

seq1  ACTAGAAAATCTGAAGACAAACTGGAAAAGCAAAGACATATAAACAAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAAAATCTGAAGACAAACTGGAAAAGCAAAGACATATAAACAAACT  150

seq1  ATCTTAAGAAATAACCTAACACAACCAAGTAGAATTTAACCACGATTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAAGAAATAACCTAACACAACCAAGTAGAATTTAACCACGATTACT  200

seq1  CTTGACTCCATATTGAGGCTGTCTCAAGCAATAAACAAAACAATAATAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACTCCATATTGAGGCTGTCTCAAGCAATAAACAAAACAATAATAAA  250

seq1  TACCCATAATACTTTCATAATCATAATTTTAGCAAGCTAGGATGATAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCATAATACTTTCATAATCATAATTTTAGCAAGCTAGGATGATAATT  300

seq1  TTCTCAACTTCTTAATTTTATTTTTTACTTTATTATTAAAAATATTTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAACTTCTTAATTTTATTTTTTACTTTATTATTAAAAATATTTTGA  350

seq1  AATAAATTAAAACACACACACACAAAATTAGCCAGACCCAAATACTATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATTAAAACACACACACACAAAATTAGCCAGACCCAAATACTATAC  400

seq1  AAGTTGATTAAGTTACGGCAGTTAGAACTGTCATTTTAAAAGGAAGCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGATTAAGTTACGGCAGTTAGAACTGTCATTTTAAAAGGAAGCTGT  450

seq1  GAAGCTCCACATTAATTTTATGTACTTACCCACCACTAAAAGAAAAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTCCACATTAATTTTATGTACTTACCCACCACTAAAAGAAAAAAAC  500

seq1  CATTTTCCATTGCTTGTATCCACTTTTCCCTTATTCTCTTATATTTGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCCATTGCTTGTATCCACTTTTCCCTTATTCTCTTATATTTGCTT  550

seq1  TTCTTCATGTTATACTGTATATATAATGTGCATTTGTATACATATTACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCATGTTATACTGTATATATAATGTGCATTTGTATACATATTACTG  600

seq1  ACTAGATTCTACATGAGACAGAAAATGTCAAGTTTTTAAAAGAACAAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGATTCTACATGAGACAGAAAATGTCAAGTTTTTAAAAGAACAAATT  650

seq1  TATATAAACGCCAGTGCTAAAACTATATTAATGATGAGGGACTAAATGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAACGCCAGTGCTAAAACTATATTAATGATGAGGGACTAAATGCA  700

seq1  GTTTCATAGTATCTGGCATGAACAAGAATATAGAACCTCTCTCAATTTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATAGTATCTGGCATGAACAAGAATATAGAACCTCTCTCAATTTGG  750

seq1  TCGCCTGTTTATTGACTTAAAGAATCTGCTCAAAAGTGCAAATAGAAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCTGTTTATTGACTTAAAGAATCTGCTCAAAAGTGCAAATAGAAAAT  800

seq1  TTCTTGATTAGAAACAAATAATAAATGTTATACTATCAGTTGAAATGAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGATTAGAAACAAATAATAAATGTTATACTATCAGTTGAAATGAAT  850

seq1  TTTGTATATACGAAAA-CCTAATATATACGAATATGTGTTGTATATACGA  899
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTTGTATATACGAAAACCCTAATATATACGAATATGTGTTGTATATACGA  900

seq1  ACACATACACACACCACAAC-TATTAGAATAAACAAATGCAGAACGAATT  948
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACACATACACACACCACAACTTATTAGAATAAACAAATGCAGAACGAATT  950

seq1  CAAGATACAAGACCAGTATAAAA-TGAGGTGGAATGAGGAGACTGCTACG  997
      | ||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  C-AGATACAAGACCAGTATAAAATTGAGGTGGAATGAGGAGACTGCTACG  999

seq1  GAGTTAAAGTGCTTGATGCAAAGCACTTTGGACTGGTGTTCCAGTTTCCA  1047
      ||||||||||||||||||| |||||||||||||||||||| |||||  ||
seq2  GAGTTAAAGTGCTTGATGC-AAGCACTTTGGACTGGTGTT-CAGTT--CA  1045

seq1  GAACTCACTTAAAACCTAAGGATGGATAGTGGCTA-TCTAGAATTCCAGC  1096
      ||||||||||||||||| | ||| ||||||| ||| ||||||||| ||||
seq2  GAACTCACTTAAAACCTTAAGAT-GATAGTGCCTATTCTAGAATT-CAGC  1093

seq1  ATTTAGAGGTAAAATAG-ATCAAT  1119
      | ||||| ||||||||| ||||||
seq2  A-TTAGA-GTAAAATAGAATCAAT  1115


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