BAC Information

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BAC

Clone NameB6Ng01-316K13
Chromosome3 (Build37)
Map Location 119,566,883 - 119,700,206
singlet/doubletdoublet
Overlap genenone
Upstream geneDpyd, LOC100043275, LOC100043278, Ptbp2
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316K13.bB6Ng01-316K13.g
ACCGA107000GA107001
length1,1051,188
definitionB6Ng01-316K13.b B6Ng01-316K13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,566,883 - 119,567,986)(119,699,040 - 119,700,206)
sequence
gaattctaatcatccatcttttagcactgagaagtagctgatgacaaggt
ttcaaatagtgaccatgtgttctcattgaaaaagaaaatgtcctttgtag
gcaacaatgcgtcaaactgtttttcccatgttatacataaaaatagtttg
aagtgtgaagacagaactaaaaataacctattaccttatatttagctgta
catagtgtgtgtttaaattaatgtttttacacaaaggaaacgaaaacata
atgccaatctttctgactgggagggattgtcctctctctgtggctactca
tatcttagaggctgaagtgtcccagatcttgccctgtctctcaagtacag
actaacaactatagagcctcacctttcatctgattggttctccctaggaa
gcaatcctccttttccttcatccccagacacagagatactagatacctgc
cttacagattttcaggacgccgaagcaattcaaactagctgttcccaaac
tgagcaccctgccatgcttttaaaatgtaattttatccattatttttctg
tgtcatggtatatggatattgcctatgtccacatagaagtggtgcacgca
tacagagtccagagagcacgtatacagagcacgctgggtgtgctactctg
cctctgtcaagattattccgttgagacaggctcagcaagcccagacagtc
ttcctgttacagcaactccctcctctcccacaacacacaccagtgctgga
gttatgagtgtgtttttgtggatgctaggaatttgaactcaggtcatcat
agctgtgcactgcacacctttcttcagtctgctgctgtgatttccataag
gactgtgacccagactttcccatgctcttgcttctgatctggcatgtttc
tcacttggccctgtttagtgtttgatgctaaactcctttgttttatgata
tggctgtacttcagtagctatctcgtaaatgatgcagacatttgatgcag
aggaagcttaagaccggaaatgttgggtgtttgtcatggcttctgttatt
tctctttgaaaaaaatagttactgtctttagttagcgttttactgcccta
tgaac

gaattccagggtacagttttgacattgggtttaggatatgagctttttgt
tgattagtgactttgctgcccatttgtttcttaaaaggacttatgcaaag
gggagggggatacttccatagaaatgtcacctggagtggatacaaagttc
aggctcagatgggaagggtcagtgtaatcctctggaaacccagcctgggg
agacagcaacagagtagaaagaagcctgggcacttctgagttatgtgact
gtgctcgttgttttgtatcattattctcctcttagtttccaataaagaat
tgagagccactacaggcaaagaagatcctgtggttcaataatgtggcaat
gtgtcactggtggcaggaatctgcaggacctcaacgccgacccaggtggc
agcttgtgactttgccttggacaaagggaatcactctttgacggatgcct
catgatgatttttagtttctgctattcctcccagacagctactgtaacaa
aagcctgtagggagagctcaagtctcacctatttccgacatccacacacc
ggctctctgttttaattttaaaagaaagaaaaaaaaaacactcagagctt
caatcactctcatgtttaatattttattctaaaatagttctgttttgttt
tgcttcttaaaattaaaactgtggttttttttccatgatgggcaacagaa
aaatcaaaggaggacagagaaacagtggtatggagaaggaacgggcttta
aacacacgagctcattctttctccttttgaggtaaagaatgtggtccagg
ctgtcctctttcctgttttctggcatggaacagcagctatagcccaggcc
gttgatagaatccatctctgtaagcctattaagaaacacacacacacacg
cacacacacacacgcacacactcatacacacacacatataacacagacaa
agagaattattttaactaaataattcttattcatgagacactttgtctgt
taaggaacgaccataccaaaagcctataataggattctttattcgagttt
ttctctttcagtcctctttaaaagaagaacaaatcagggagcccacctgt
agatcccagaacctgtcccccacccccttcctgggctttttctactctaa
tagtagccgaaatccaccgcccatggggtcaagctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_119566883_119567986
seq2: B6Ng01-316K13.b_49_1153

seq1  GAATTCTAATCATCCATCTTTTAGCACTGAGAAGTAGCTGATGACAAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAATCATCCATCTTTTAGCACTGAGAAGTAGCTGATGACAAGGT  50

seq1  TTCAAATAGTGACCATGTGTTCTCATTGAAAAAGAAAATGTCCTTTGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATAGTGACCATGTGTTCTCATTGAAAAAGAAAATGTCCTTTGTAG  100

seq1  GCAACAATGCGTCAAACTGTTTTTCCCATGTTATACATAAAAATAGTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAATGCGTCAAACTGTTTTTCCCATGTTATACATAAAAATAGTTTG  150

seq1  AAGTGTGAAGACAGAACTAAAAATAACCTATTACCTTATATTTAGCTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGAAGACAGAACTAAAAATAACCTATTACCTTATATTTAGCTGTA  200

seq1  CATAGTGTGTGTTTAAATTAATGTTTTTACACAAAGGAAACGAAAACATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTGTGTGTTTAAATTAATGTTTTTACACAAAGGAAACGAAAACATA  250

seq1  ATGCCAATCTTTCTGACTGGGAGGGATTGTCCTCTCTCTGTGGCTACTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAATCTTTCTGACTGGGAGGGATTGTCCTCTCTCTGTGGCTACTCA  300

seq1  TATCTTAGAGGCTGAAGTGTCCCAGATCTTGCCCTGTCTCTCAAGTACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTAGAGGCTGAAGTGTCCCAGATCTTGCCCTGTCTCTCAAGTACAG  350

seq1  ACTAACAACTATAGAGCCTCACCTTTCATCTGATTGGTTCTCCCTAGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACAACTATAGAGCCTCACCTTTCATCTGATTGGTTCTCCCTAGGAA  400

seq1  GCAATCCTCCTTTTCCTTCATCCCCAGACACAGAGATACTAGATACCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCCTCCTTTTCCTTCATCCCCAGACACAGAGATACTAGATACCTGC  450

seq1  CTTACAGATTTTCAGGACGCCGAAGCAATTCAAACTAGCTGTTCCCAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAGATTTTCAGGACGCCGAAGCAATTCAAACTAGCTGTTCCCAAAC  500

seq1  TGAGCACCCTGCCATGCTTTTAAAATGTAATTTTATCCATTATTTTTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACCCTGCCATGCTTTTAAAATGTAATTTTATCCATTATTTTTCTG  550

seq1  TGTCATGGTATATGGATATTGCCTATGTCCACATAGAAGTGGTGCACGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATGGTATATGGATATTGCCTATGTCCACATAGAAGTGGTGCACGCA  600

seq1  TACAGAGTCCAGAGAGCACGTATACAGAGCACGCTGGGTGTGCTACTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGTCCAGAGAGCACGTATACAGAGCACGCTGGGTGTGCTACTCTG  650

seq1  CCTCTGTCAAGATTATTCCGTTGAGACAGGCTCAGCAAGCCCAGACAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTCAAGATTATTCCGTTGAGACAGGCTCAGCAAGCCCAGACAGTC  700

seq1  TTCCTGTTACAGCAACTCCCTCCTCTCCCACAACACACACCAGTGCTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTTACAGCAACTCCCTCCTCTCCCACAACACACACCAGTGCTGGA  750

seq1  GTTATGAGTGTGTTTTTGTGGATGCTAGGAATTTGAACTCAGGTCATCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGAGTGTGTTTTTGTGGATGCTAGGAATTTGAACTCAGGTCATCAT  800

seq1  AGCTGTGCACTGCACACCTTTCTTCAGTCTGCTGCTGTGATTTCCATAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGCACTGCACACCTTTCTTCAGTCTGCTGCTGTGATTTCCATAAG  850

seq1  GACTGTGACCCAGACTTTCCCATGCTCTTGCTTCTGATCTGGCATGTTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTGACCCAGACTTTCCCATGCTCTTGCTTCTGATCTGGCATGTTTC  900

seq1  TCACTTGGCCCTGTTTAGTGTTTGATGCTAAACTCCTTTGTTTTATGATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTGGCCCTGTTTAGTGTTTGATGCTAAACTCCTTTGTTTTATGATA  950

seq1  TGGCTGTACTTCAGTAGCTATCTCGTAAATGATGCAGAACATTTGATGCA  1000
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGGCTGTACTTCAGTAGCTATCTCGTAAATGATGCAG-ACATTTGATGCA  999

seq1  GAGGAAGGCTTAAGACGGGAAATGTTGGGTGTTTGTCATGGCTTCTGTTA  1050
      |||||| ||||||||| |||||||||||||||||||||||||||||||||
seq2  GAGGAA-GCTTAAGACCGGAAATGTTGGGTGTTTGTCATGGCTTCTGTTA  1048

seq1  TTTCTCTTGGAAAAAATTAGTTACTGTC-TTAGTTAGCGTTTTACTG--C  1097
      |||||||| ||||||| ||||||||||| ||||||||||||||||||  |
seq2  TTTCTCTTTGAAAAAAATAGTTACTGTCTTTAGTTAGCGTTTTACTGCCC  1098

seq1  TATGAAC  1104
      |||||||
seq2  TATGAAC  1105


seq1: chr3_119699040_119700206
seq2: B6Ng01-316K13.g_72_1259 (reverse)

seq1  AAAAGCTTGACCCCA-GGGCGGTG--ATTCTGCTACTAATTTTGAGTTGG  47
      ||||||||||||||| ||||||||   ||| |||||||  || ||||   
seq2  AAAAGCTTGACCCCATGGGCGGTGGATTTCGGCTACTA--TTAGAGT--A  46

seq1  GAAAAAAGCCAGGA--GGGGT-GGGGACAGGGTCTGGAATCTACAGGT-G  93
      ||||||  ||||||  ||||| ||||||||| ||||| |||||||||| |
seq2  GAAAAAGCCCAGGAAGGGGGTGGGGGACAGGTTCTGGGATCTACAGGTGG  96

seq1  GCT-CCTGATTTGT--CTCTTTT-AAGA-GACTGGAAG-GGAAAACTCGA  137
      ||| ||||||||||   |||||| |||| ||||| ||| | |||||||||
seq2  GCTCCCTGATTTGTTCTTCTTTTAAAGAGGACTGAAAGAGAAAAACTCGA  146

seq1  --TAAGAATCTTA-TATA-GCTTTT-GTATGGTCG-TCCTTAACAGAC-A  180
         ||||||| || |||| |||||| ||||||||| |||||||||||| |
seq2  ATAAAGAATCCTATTATAGGCTTTTGGTATGGTCGTTCCTTAACAGACAA  196

seq1  AGTGTCTCATG-ATAGGATTTATTTAGTTTAAATATTTCTCTTTGTCTGT  229
      ||||||||||| ||| || |||||||||| ||||| ||||||||||||||
seq2  AGTGTCTCATGAATAAGAATTATTTAGTTAAAATAATTCTCTTTGTCTGT  246

seq1  GTTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  279
      ||||| ||||||||||| || ||||||| ||||||||||||| |||||||
seq2  GTTATATGTGTGTGTGTATGAGTGTGTGCGTGTGTGTGTGTGCGTGTGTG  296

seq1  TGTGTGTTTCTTAATAGGCTTACAGAGATGGATTCTATCAAC-GCCTGGG  328
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGTGTGTTTCTTAATAGGCTTACAGAGATGGATTCTATCAACGGCCTGGG  346

seq1  CTATAGCTGCTGTTCCATGCCAG-AAACAGG-AAGAGGACAGCCTGGACC  376
      ||||||||||||||||||||||| ||||||| ||||||||||||||||||
seq2  CTATAGCTGCTGTTCCATGCCAGAAAACAGGAAAGAGGACAGCCTGGACC  396

seq1  ACATTCTTTACCTCAAAAGGAGAAAGAATGAGCTCGTGTG-TTAAAGCCC  425
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ACATTCTTTACCTCAAAAGGAGAAAGAATGAGCTCGTGTGTTTAAAGCCC  446

seq1  GTTCCTTCTCCATACCACTGTTTCTCTGTCCTCCTTTGATTTTTCTGTTG  475
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTTCTCCATACCACTGTTTCTCTGTCCTCCTTTGATTTTTCTGTTG  496

seq1  CCCATCATGGAAAAAAAACCACAGTTTTAATTTTAAGAAGCAAAACAAAA  525
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCATGGAAAAAAAACCACAGTTTTAATTTTAAGAAGCAAAACAAAA  546

seq1  CAGAACTATTTTAGAATAAAATATTAAACATGAGAGTGATTGAAGCTCTG  575
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTATTTTAGAATAAAATATTAAACATGAGAGTGATTGAAGCTCTG  596

seq1  AGTGTTTTTTTTTTCTTTCTTTTAAAATTAAAACAGAGAGCCGGTGTGTG  625
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTTTTTTTTCTTTCTTTTAAAATTAAAACAGAGAGCCGGTGTGTG  646

seq1  GATGTCGGAAATAGGTGAGACTTGAGCTCTCCCTACAGGCTTTTGTTACA  675
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCGGAAATAGGTGAGACTTGAGCTCTCCCTACAGGCTTTTGTTACA  696

seq1  GTAGCTGTCTGGGAGGAATAGCAGAAACTAAAAATCATCATGAGGCATCC  725
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTGTCTGGGAGGAATAGCAGAAACTAAAAATCATCATGAGGCATCC  746

seq1  GTCAAAGAGTGATTCCCTTTGTCCAAGGCAAAGTCACAAGCTGCCACCTG  775
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAGAGTGATTCCCTTTGTCCAAGGCAAAGTCACAAGCTGCCACCTG  796

seq1  GGTCGGCGTTGAGGTCCTGCAGATTCCTGCCACCAGTGACACATTGCCAC  825
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGGCGTTGAGGTCCTGCAGATTCCTGCCACCAGTGACACATTGCCAC  846

seq1  ATTATTGAACCACAGGATCTTCTTTGCCTGTAGTGGCTCTCAATTCTTTA  875
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTGAACCACAGGATCTTCTTTGCCTGTAGTGGCTCTCAATTCTTTA  896

seq1  TTGGAAACTAAGAGGAGAATAATGATACAAAACAACGAGCACAGTCACAT  925
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAACTAAGAGGAGAATAATGATACAAAACAACGAGCACAGTCACAT  946

seq1  AACTCAGAAGTGCCCAGGCTTCTTTCTACTCTGTTGCTGTCTCCCCAGGC  975
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGAAGTGCCCAGGCTTCTTTCTACTCTGTTGCTGTCTCCCCAGGC  996

seq1  TGGGTTTCCAGAGGATTACACTGACCCTTCCCATCTGAGCCTGAACTTTG  1025
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTCCAGAGGATTACACTGACCCTTCCCATCTGAGCCTGAACTTTG  1046

seq1  TATCCACTCCAGGTGACATTTCTATGGAAGTATCCCCCTCCCCTTTGCAT  1075
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCACTCCAGGTGACATTTCTATGGAAGTATCCCCCTCCCCTTTGCAT  1096

seq1  AAGTCCTTTTAAGAAACAAATGGGCAGCAAAGTCACTAATCAACAAAAAG  1125
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCTTTTAAGAAACAAATGGGCAGCAAAGTCACTAATCAACAAAAAG  1146

seq1  CTCATATCCTAAACCCAATGTCAAAACTGTACCCTGGAATTC  1167
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATATCCTAAACCCAATGTCAAAACTGTACCCTGGAATTC  1188


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