BAC Information

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BAC

Clone NameB6Ng01-317F11
Chromosome3 (Build37)
Map Location 128,387,170 - 128,388,311
singlet/doubletsinglet
Overlap genenone
Upstream geneAlpk1, T2bp, BC002199, 5730508B09Rik, LOC100043382, EG668828
Downstream geneLOC100043393, EG668831, Pitx2, Enpep, LOC100043415, LOC435755, LOC668840, Elovl6, LOC100043758, Egf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317F11.bB6Ng01-317F11.g
ACCGA107511GA107512
length1,1161,146
definitionB6Ng01-317F11.b B6Ng01-317F11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagctctgagccccatttttaatggggttatttggttc
tctcaagtctaacttctggagctctttgtatatattggttattagtcctc
tatcgaatgtagggttagtaaagaaagatcttttcccaatccgttggttg
tcattttgtcctattgacagtgtcctttgccttacagaagcattgcaatt
ttatgaggtcccatttgtcaattcttgatcttagagcataagctattggt
gttctattcaggacattttcccctgtgccaatgtgcccaaggctcttccc
cactttcttttcttttagtttcagtgtatctgattttatgtggagatcct
tgattcacttagacttgagctttgtacaaggagataagagtagattgatt
tgcattcttctacatgctaaccaccagttgaaccagcactatttgttgaa
aatgctgtcttttttccactggatggttttagctcctttgtcaaagatca
agaatacctaagatacaattctcagaccacatgaagctcaagaagaagga
agaccatagtgtggatacttcagtcctcctgagaagggggatcaaaatac
ccatgggaggagatacagagggaaaatttggagcagaaactgaaggaaag
gccatccatccagtgactgtcctacctggggatctatcctatatacagtt
accaaacccagacactattgtggatgtcaacaagtgcttgctgacaggag
cctgcctgatatatctgtctcctgagaggttctgccagtgcctgagaata
cagaagtggatgctcacagccatccattggactgagcacaggtttcccaa
tggaggagctagagaaaggaccaagggagctgaaagggtttgcagctcca
taggaggaacaacaactaacaagtaaccccagagctctcagggacaaaac
cactaacggtaagagtacacaaggagggactcaaggctccagccacataa
tgttgcaaaagatgatctgtgagacatcatgagagagaggaccttaggtc
ttgtgatgcttgatgccccagggtatggtaatgacgggacagggaaagtt
ggaattggtatggctt
gaattcctacacaccaagtcaaaaacactaatccaaaagtgttttcaata
acttccatgattttttatttatttttttccatttacatgtgtgtggttat
catacacctttgaatgcatgggcacgtggaaacccagatttgatgttagt
aataattttggttgctcttaagcctcattttctgagtcaaggtctctcaa
ttaagctcagagctcattgctacaactattcctgccagctagttcactct
ctttagccccttactctagcttcatctttagagtctgaacctacagatta
gttgtcacccccattcaacatttactgagcatattctgtcctgttgcttg
catggcaagtgttttgactgctgagtgattttcctaatcctctagtttat
attttagaacttttacagcatatccatttgggccaccaaaacatcccaat
tatatttatattttaaatatttataaggctatttatcatcagaaagagga
gaatgagacaagtaaacctctgagtttcttcatgcatgttcaaaattgaa
catttcctacaattctctttgaataagatgaaccaaatgtctcctaggag
aaactatgtgattctgaaacaaacagacttgtcaaatcaatgatttctgg
actggaggcttatgtccttgggcacccccagttttcctacttataaaata
acagcagtaattttaatagtgcatatgaattacatacagcataaacacag
tgggattgtgtaaaacactgtattataccagttcagtagatgacctttca
tagataatcccactactgtttttgtatgtatgcataaacttttctcatca
agatgactgttcacattcccaaccttctgaatgtgtaactgagacacata
ggaattgtttttgtcatttattggattatatgaagctaatgtttcctcta
agtctagattttcctttagtgatatcaactagctttgcatttatttcaaa
catgtctaaatgagcactgttctggcaattgcttactgactgatagtgac
tcattccacatgttttctaaacaaaatttgtaactaatatttttctggat
gtggtgtgttctacatggaagaattactattctttgaaatacctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_128387170_128388311
seq2: B6Ng01-317F11.g_64_1209 (reverse)

seq1  AGAGGTATTTCAAAGATAAGTTAATCTT-CATGTAGGA-ACA-CACATCC  47
      ||||||||||||||||  ||| | |||| ||||||| | ||| |||||||
seq2  AGAGGTATTTCAAAGAATAGTAATTCTTCCATGTAGAACACACCACATCC  50

seq1  AG-AAAATATTAGTTACAAATTTTGTTTAG-AAACATGT-GAATGAGTCA  94
      || ||||||||||||||||||||||||||| |||||||| ||||||||||
seq2  AGAAAAATATTAGTTACAAATTTTGTTTAGAAAACATGTGGAATGAGTCA  100

seq1  CTATCAGTCAGTAAGCAATTGCCAGAACAGTGCTCATTTAGACATGTTTG  144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAGTCAGTAAGCAATTGCCAGAACAGTGCTCATTTAGACATGTTTG  150

seq1  AAATAAATGCAAAGCTAGTTGATATCACTAAAGGAAAATCTTAGACTTAG  194
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AAATAAATGCAAAGCTAGTTGATATCACTAAAGGAAAATC-TAGACTTAG  199

seq1  AGGAAACATTAGCTTCATATAATCCAATAAATGACAAAAACAATTCCTAT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACATTAGCTTCATATAATCCAATAAATGACAAAAACAATTCCTAT  249

seq1  GTTGTCTCAGTTACACATTCAGAAGGTTGGGAATGTGAACAGTCATCTTG  294
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  G-TGTCTCAGTTACACATTCAGAAGGTTGGGAATGTGAACAGTCATCTTG  298

seq1  ATGAGAAAAGTTTATGCATACATACAAAAACAGTAGTGGGATTATCTATG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAAAAGTTTATGCATACATACAAAAACAGTAGTGGGATTATCTATG  348

seq1  AAAGGTCATCTACTGAACTGGTATAATACAGTGTTTTACACAATCCCACT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTCATCTACTGAACTGGTATAATACAGTGTTTTACACAATCCCACT  398

seq1  GTGTTTATGCTGTATGTAATTCATATGCACTATTAAAATTACTGCTGTTA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTATGCTGTATGTAATTCATATGCACTATTAAAATTACTGCTGTTA  448

seq1  TTTTATAAGTAGGAAAACTGGGGGTGCCCAAGGACATAAGCCTCCAGTCC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAAGTAGGAAAACTGGGGGTGCCCAAGGACATAAGCCTCCAGTCC  498

seq1  AGAAATCATTGATTTGACAAGTCTGTTTGTTTCAGAATCACATAGTTTCT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCATTGATTTGACAAGTCTGTTTGTTTCAGAATCACATAGTTTCT  548

seq1  CCTAGGAGACATTTGGTTCATCTTATTCAAAGAGAATTGTAGGAAATGTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGAGACATTTGGTTCATCTTATTCAAAGAGAATTGTAGGAAATGTT  598

seq1  CAATTTTGAACATGCATGAAGAAACTCAGAGGTTTACTTGTCTCATTCTC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTGAACATGCATGAAGAAACTCAGAGGTTTACTTGTCTCATTCTC  648

seq1  CTCTTTCTGATGATAAATAGCCTTATAAATATTTAAAATATAAATATAAT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCTGATGATAAATAGCCTTATAAATATTTAAAATATAAATATAAT  698

seq1  TGGGATGTTTTGGTGGCCCAAATGGATATGCTGTAAAAGTTCTAAAATAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATGTTTTGGTGGCCCAAATGGATATGCTGTAAAAGTTCTAAAATAT  748

seq1  AAACTAGAGGATTAGGAAAATCACTCAGCAGTCAAAACACTTGCCATGCA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAGAGGATTAGGAAAATCACTCAGCAGTCAAAACACTTGCCATGCA  798

seq1  AGCAACAGGACAGAATATGCTCAGTAAATGTTGAATGGGGGTGACAACTA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACAGGACAGAATATGCTCAGTAAATGTTGAATGGGGGTGACAACTA  848

seq1  ATCTGTAGGTTCAGACTCTAAAGATGAAGCTAGAGTAAGGGGCTAAAGAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTAGGTTCAGACTCTAAAGATGAAGCTAGAGTAAGGGGCTAAAGAG  898

seq1  AGTGAACTAGCTGGCAGGAATAGTTGTAGCAATGAGCTCTGAGCTTAATT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAACTAGCTGGCAGGAATAGTTGTAGCAATGAGCTCTGAGCTTAATT  948

seq1  GAGAGACCTTGACTCAGAAAATGAGGCTTAAGAGCAACCAAAATTATTAC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACCTTGACTCAGAAAATGAGGCTTAAGAGCAACCAAAATTATTAC  998

seq1  TAACATCAAATCTGGGTTTCCACGTGCCCATGCATTCAAAGGTGTATGAT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATCAAATCTGGGTTTCCACGTGCCCATGCATTCAAAGGTGTATGAT  1048

seq1  AACCACACACATGTAAATGGAAAAAAATAAATAAAAAATCATGGAAGTTA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACACACATGTAAATGGAAAAAAATAAATAAAAAATCATGGAAGTTA  1098

seq1  TTGAAAACACTTTTGGATTAGTGTTTTTGACTTGGTGTGTAGGAATTC  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAACACTTTTGGATTAGTGTTTTTGACTTGGTGTGTAGGAATTC  1146