BAC Information

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BAC

Clone NameB6Ng01-317H15
Chromosome3 (Build37)
Map Location 27,402,745 - 27,547,688
singlet/doubletdoublet
Overlap geneFndc3b
Upstream geneSpata16, LOC665258, Ect2, Aadacl1, LOC100040527, Tnfsf10, Ghsr
Downstream geneE030011K20Rik, Pld1, Tnik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317H15.bB6Ng01-317H15.g
ACCGA107611GA107612
length1,048974
definitionB6Ng01-317H15.b B6Ng01-317H15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,402,745 - 27,403,785)(27,546,715 - 27,547,688)
sequence
gaattcctcccttaagctctgtcagcagctggcctccggcttctgctctt
cagcctctggctctctgcgggagagagtgttgggcctccctttggacttg
gaaatcacttctacctcaagacagactcctggaaactatagtgtatcttt
gaggacaatgttcccatgggtcagtcctctacctcagatctatttacttc
acatgggtcaggggtgagttggtgaggtgagatctctgggttcaagcccc
gctctaggtggcagcacatgtgtacttgactgtcgtattgcaacctctcg
ctctgtgcccaaactctgtcaccagtgctgcttactgcgacctaggatgt
ggtcatttgttcactgcagtgatctccacagcacacattctctcaaagag
aataaatcacaactccttatggatgtgcaagaggtctgccaccactacaa
gtcagtgtctttggaatcagtgataggcgcgatttccaggtctgaataac
tacacatggtacgatctgacttccgtaccactaatataaaagggtctttg
gaaagtatatgagctaaatttgcaaagaaattagttaactggttaaaaat
accctgggagcttataaacctactaactacttgttagttagtaggccaca
catcagttagaactcagtctttcctgtttgttacaggttctaacttgaga
gtagctgtatgtgtgtacagtaaaatatattaacttgtagcaattatcat
accttttctctctgtcccttctgtccagtatttgaactaacctgtaaaat
cctacttttccctttttttttttttttttgtattctcagaatttgtggct
atgtgggataaccacaaaattttggtgaaagaatatgctaaggaattact
accacagaaatttggtaaatttcaaaagcaagtcttcatgatgaaatacc
caaagaaaaactacaagagaggaaagggtagaggtgttacattcaaatcg
acagctttcggctcctctgctttccagctctgatttggtgtctattgc

gaattcttagttgtccccttactccctggcctacatgtcagcacattgct
ccctcggggggttggggagctgagtgagggggcctgagcctttgcttggc
tgtgattgtctagctgttcatcccccttaatgtgccttggcccagctcct
gagttctgctggccttgctttgctctgggtggtgctctcctgttgttctt
tctcttgtcatctgaaactgattcgtgtacagaactgccaactcacatct
tgaaataatgtaaggaaatttgggtcattggcccactgagtaaggatcag
gacattttgttactaatttgaaggccaggttcacagacgtaagaactccc
agcagtgattagggccttggcttttgcgaaggatgctcttcctagtagat
agttgctctggcctctggagatggatcagcagttcttccctgcaagtcag
ggttttcatgaatttggcttttttatgtttcagagaataggctagtgcca
aaatacttttttacacttggaggaaggcaggcaaagaaagaagaaaagta
ccaaaccaaatgcctagagagatggagagactggcatacctgtttgagat
gattgcaaactatgtttcttcaaaggagttcattatagccatgaggatcc
gctcctttcatctctaaaatgccctttccccactcttgcctagcagctca
ggagctaactccgactggcatagcatggccagcagtgcaccagggacttg
ctctcctaggagaatggctatgaaccacaagggctcacgtggcggctgtc
tctttcattcagaacagaaggttgggcacaaagcacttgtggctttagtg
ttttgatgtgtggttaaggggaaagggttgtgaggtcctgtggctgttcc
cagaatctcagagctggacatctagtaaagagttaaattgaggtagggaa
ctttgggtacctgtgtgtcatgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_27402745_27403785
seq2: B6Ng01-317H15.b_48_1095

seq1  GAATTCCTCCCTTAAGCTCTGTCAGCAGCTGGCCTCCGGCTTCTGCTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCCTTAAGCTCTGTCAGCAGCTGGCCTCCGGCTTCTGCTCTT  50

seq1  CAGCCTCTGGCTCTCTGCGGGAGAGAGTGTTGGGCCTCCCTTTGGACTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCTGGCTCTCTGCGGGAGAGAGTGTTGGGCCTCCCTTTGGACTTG  100

seq1  GAAATCACTTCTACCTCAAGACAGACTCCTGGAAACTATAGTGTATCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCACTTCTACCTCAAGACAGACTCCTGGAAACTATAGTGTATCTTT  150

seq1  GAGGACAATGTTCCCATGGGTCAGTCCTCTACCTCAGATCTATTTACTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACAATGTTCCCATGGGTCAGTCCTCTACCTCAGATCTATTTACTTC  200

seq1  ACATGGGTCAGGGGTGAGTTGGTGAGGTGAGATCTCTGGGTTCAAGCCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGGTCAGGGGTGAGTTGGTGAGGTGAGATCTCTGGGTTCAAGCCCC  250

seq1  GCTCTAGGTGGCAGCACATGTGTACTTGACTGTCGTATTGCAACCTCTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAGGTGGCAGCACATGTGTACTTGACTGTCGTATTGCAACCTCTCG  300

seq1  CTCTGTGCCCAAACTCTGTCACCAGTGCTGCTTACTGCGACCTAGGATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGCCCAAACTCTGTCACCAGTGCTGCTTACTGCGACCTAGGATGT  350

seq1  GGTCATTTGTTCACTGCAGTGATCTCCACAGCACACATTCTCTCAAAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATTTGTTCACTGCAGTGATCTCCACAGCACACATTCTCTCAAAGAG  400

seq1  AATAAATCACAACTCCTTATGGATGTGCAAGAGGTCTGCCACCACTACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATCACAACTCCTTATGGATGTGCAAGAGGTCTGCCACCACTACAA  450

seq1  GTCAGTGTCTTTGGAATCAGTGATAGGCGCGATTTCCAGGTCTGAATAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTGTCTTTGGAATCAGTGATAGGCGCGATTTCCAGGTCTGAATAAC  500

seq1  TACACATGGTACGATCTGACTTCCGTACCACTAATATAAAAGGGTCTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATGGTACGATCTGACTTCCGTACCACTAATATAAAAGGGTCTTTG  550

seq1  GAAAGTATATGAGCTAAATTTGCAAAGAAATTAGTTAACTGGTTAAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTATATGAGCTAAATTTGCAAAGAAATTAGTTAACTGGTTAAAAAT  600

seq1  ACCCTGGGAGCTTATAAACCTACTAACTACTTGTTAGTTAGTAGGCCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGGGAGCTTATAAACCTACTAACTACTTGTTAGTTAGTAGGCCACA  650

seq1  CATCAGTTAGAACTCAGTCTTTCCTGTTTGTTACAGGTTCTAACTTGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTTAGAACTCAGTCTTTCCTGTTTGTTACAGGTTCTAACTTGAGA  700

seq1  GTAGCTGTATGTGTGTACAGTAAAATATATTAACTTGTAGCAATTATCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTGTATGTGTGTACAGTAAAATATATTAACTTGTAGCAATTATCAT  750

seq1  ACCTTTTCTCTCTGTCCCTTCTGTCCAGTATTTGAACTAACCTGTAAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTCTCTCTGTCCCTTCTGTCCAGTATTTGAACTAACCTGTAAAAT  800

seq1  CCTACTTTTCC---TTTTTTTTTTTTTTTGTATTCTCAGAATTTGTGGCT  847
      |||||||||||   ||||||||||||||||||||||||||||||||||||
seq2  CCTACTTTTCCCTTTTTTTTTTTTTTTTTGTATTCTCAGAATTTGTGGCT  850

seq1  ATGTGGGATAACCACAAA--TTTGGTGAAAGAATATGCTAAGGAAATACT  895
      ||||||||||||||||||  ||||||||||||||||||||||||| ||||
seq2  ATGTGGGATAACCACAAAATTTTGGTGAAAGAATATGCTAAGGAATTACT  900

seq1  ACCACAGAAA-TTGGTAAA-TTCAAAAGC-AGTCTTCATGATGAATAACC  942
      |||||||||| |||||||| ||||||||| ||||||||||||||| |  |
seq2  ACCACAGAAATTTGGTAAATTTCAAAAGCAAGTCTTCATGATGAA-ATAC  949

seq1  CCAAAGAAAAAC-ACAGGAGAGGAAAGGGTAAGAGGTG-TACATTCAAAT  990
      |||||||||||| ||| ||||||||||||| ||||||| |||||||||||
seq2  CCAAAGAAAAACTACAAGAGAGGAAAGGGT-AGAGGTGTTACATTCAAAT  998

seq1  CGACAGCTTTCGGCTCCTCTGCTTTCCAGCTCCTGATTTGGTGTCTATTG  1040
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CGACAGCTTTCGGCTCCTCTGCTTTCCAGCT-CTGATTTGGTGTCTATTG  1047

seq1  C  1041
      |
seq2  C  1048


seq1: chr3_27546715_27547688
seq2: B6Ng01-317H15.g_65_1038 (reverse)

seq1  TTCATGGACACACAGCTCCCCAAAGTTCCCT-CCTCTATTTAACTCTTTA  49
      ||||| ||||||||| | ||||||||||||| |||| |||||||||||||
seq2  TTCAT-GACACACAGGTACCCAAAGTTCCCTACCTCAATTTAACTCTTTA  49

seq1  CCTAGATGTCCAGCTCTGAGAATCTGGGAACAGCCACAGGCCCTCACAA-  98
       |||||||||||||||||||| |||||||||||||||||| |||||||| 
seq2  -CTAGATGTCCAGCTCTGAGATTCTGGGAACAGCCACAGGACCTCACAAC  98

seq1  CCTTTCCCCTTAACCACACATCAAAACACTAAAGCCACAAGTGCTTTGTG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCCCTTAACCACACATCAAAACACTAAAGCCACAAGTGCTTTGTG  148

seq1  CCCAACCTTCTGTTCTGAATGAAAGAGACAGCCGCCACGTGAGCCCTTGT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACCTTCTGTTCTGAATGAAAGAGACAGCCGCCACGTGAGCCCTTGT  198

seq1  GGTTCATAGCCATTCTCCTAGGAGAGCAAGTCCCTGGTGCACTGCTGGCC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCATAGCCATTCTCCTAGGAGAGCAAGTCCCTGGTGCACTGCTGGCC  248

seq1  ATGCTATGCCAGTCGGAGTTAGCTCCTGAGCTGCTAGGCAAGAGTGGGGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATGCCAGTCGGAGTTAGCTCCTGAGCTGCTAGGCAAGAGTGGGGA  298

seq1  AAGGGCATTTTAGAGATGAAAGGAGCGGATCCTCATGGCTATAATGAACT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCATTTTAGAGATGAAAGGAGCGGATCCTCATGGCTATAATGAACT  348

seq1  CCTTTGAAGAAACATAGTTTGCAATCATCTCAAACAGGTATGCCAGTCTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGAAGAAACATAGTTTGCAATCATCTCAAACAGGTATGCCAGTCTC  398

seq1  TCCATCTCTCTAGGCATTTGGTTTGGTACTTTTCTTCTTTCTTTGCCTGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTCTCTAGGCATTTGGTTTGGTACTTTTCTTCTTTCTTTGCCTGC  448

seq1  CTTCCTCCAAGTGTAAAAAAGTATTTTGGCACTAGCCTATTCTCTGAAAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCCAAGTGTAAAAAAGTATTTTGGCACTAGCCTATTCTCTGAAAC  498

seq1  ATAAAAAAGCCAAATTCATGAAAACCCTGACTTGCAGGGAAGAACTGCTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAAGCCAAATTCATGAAAACCCTGACTTGCAGGGAAGAACTGCTG  548

seq1  ATCCATCTCCAGAGGCCAGAGCAACTATCTACTAGGAAGAGCATCCTTCG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCTCCAGAGGCCAGAGCAACTATCTACTAGGAAGAGCATCCTTCG  598

seq1  CAAAAGCCAAGGCCCTAATCACTGCTGGGAGTTCTTACGTCTGTGAACCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCCAAGGCCCTAATCACTGCTGGGAGTTCTTACGTCTGTGAACCT  648

seq1  GGCCTTCAAATTAGTAACAAAATGTCCTGATCCTTACTCAGTGGGCCAAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTCAAATTAGTAACAAAATGTCCTGATCCTTACTCAGTGGGCCAAT  698

seq1  GACCCAAATTTCCTTACATTATTTCAAGATGTGAGTTGGCAGTTCTGTAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAAATTTCCTTACATTATTTCAAGATGTGAGTTGGCAGTTCTGTAC  748

seq1  ACGAATCAGTTTCAGATGACAAGAGAAAGAACAACAGGAGAGCACCACCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAATCAGTTTCAGATGACAAGAGAAAGAACAACAGGAGAGCACCACCC  798

seq1  AGAGCAAAGCAAGGCCAGCAGAACTCAGGAGCTGGGCCAAGGCACATTAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAAAGCAAGGCCAGCAGAACTCAGGAGCTGGGCCAAGGCACATTAA  848

seq1  GGGGGATGAACAGCTAGACAATCACAGCCAAGCAAAGGCTCAGGCCCCCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGATGAACAGCTAGACAATCACAGCCAAGCAAAGGCTCAGGCCCCCT  898

seq1  CACTCAGCTCCCCAACCCCCCGAGGGAGCAATGTGCTGACATGTAGGCCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGCTCCCCAACCCCCCGAGGGAGCAATGTGCTGACATGTAGGCCA  948

seq1  GGGAGTAAGGGGACAACTAAGAATTC  974
      ||||||||||||||||||||||||||
seq2  GGGAGTAAGGGGACAACTAAGAATTC  974


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