BAC Information

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BAC

Clone NameB6Ng01-317L24
Chromosome3 (Build37)
Map Location 45,362,027 - 45,489,137
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC676484, LOC100039296, Pcdh10, LOC100039282
Downstream geneLOC433580, LOC671801, EG241989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317L24.bB6Ng01-317L24.g
ACCGA107817GA107818
length1,1531,049
definitionB6Ng01-317L24.b B6Ng01-317L24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,362,027 - 45,363,192)(45,488,080 - 45,489,137)
sequence
gaattcactgtgcagtgcaaagtgggtgtggatattgttcagggtccagc
tagcaaacaaatagcatcaacccccaaggttgactgtccaagtactcgcc
attggatttttattttactttttgtgtgacatcaaagcccttgatcattc
acttcaaaagacggtgagacctccctggactgagactccttgacctcagg
tttttcttccccctcttgtggatatgctcaaatgttgtcttctttgtcat
agatgctactatcatgtgtttcttgttacttaattttttaaaatatagca
ttctgtttgaaaagacacccagtatttaaactcttaacaacccctagcac
acagattagcaatctttatcctctttaaatggttttgtcatatacttcca
attctagactttatcatcttgcaaagtctgtatcagtgtttctcaacctt
cctaaagctgtgatccctcaagatacttcctcatattgtggaacttccaa
ccaaaaaaaattatttttgttactacctcctaattgcaattttcttattg
ttgtgaaccataatgtaaataaactattttccaatggtcatagggtacct
aggtgaaaatgtcttttgaccccatggggttgtgaactacaggttgataa
ccatttctctataatatcaatctgcagctaattttttttctatgagtttg
actactctatgtgtgttgaataaaattaatagtcttctgaaattattttc
atttatttttatttgtggtgtgtgcacacatctgtgacaagtgtgtggca
tgtgtacatatgaaacagacacaagagtagcacagcataggtacacgtga
ggccataggaatattttcaggagtcagttctctctgagtgtgggatcctg
agattaaactcaaattatcatgtttacttgccaagtgctttatgacatga
ttcaacataatgcccataaaatacttatttgagggctaacagtaatggct
ttgtgttagagcagttgcagcttcttcaaggtccacgtcaatccagtttt
ctttttcaggagtctgcaatatctgtgctgcagacctctgggttcctttg
tcctgtgtgacggttcctaagtctggttggcaagcgtaggtatgacagac
aga

gaattcttttgtatttcttaattcagagagagttagatggaatgtataaa
agcaaacatgtagaaggcagagggcaacttgggagactcagttttctact
tctaacatgtagggcccaggaatcattcaagttaccaggttcagcagtag
gagcctttatttgatgagcatgttgtttggcctaaataggaatgacattt
gactaccaattactgaactaagttttctattttgacattttatgtgaacc
catcacccaataaacaaaatgcactaaaggtaggtgtagcagaattttct
ctgttcagttaatttaaatattaatacaacaaggagcctctgactggaca
gagaaaagggaggaggagctaagggtttcagagagggacagagacagaga
gaggaggaaggaagatgacgcgagaggaagatgatccagattctgcaggg
ctataaatagccacaggtagctgtgaatatcataaaggatagaaaatttg
aaataactcgtctaatctagatgggcagctttaatcattatcaattgact
ctgaaattattgtatgggcatcttgtgaattgagaatttattgacatata
aatctgactgattaattataaatttctagagttttgatttactggtttaa
ggggatttgtaacaactagccacagagggtaggtggctgagaaggtatgg
atggctctgaggcaggcaaaccagagctgggaagactgcagcccggggct
ggcctagtggtggttagaccaccagggcagagagtagcttgggatggtgc
caatcttttttaatatttcccacaacaagtaggtagagaaaataggagaa
agtcatgatttttccacacatagtgtcttagagacagcatgaccaagaca
acatttttacaagaaagtctttgattggagcttgcttagagcttcagaga
tttagtccattgtcattgaaatgtggacatgtttgcttgcaggtatgtgc
tagagtagtgagaagctacatctttatccatagacatcagatagagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_45362027_45363192
seq2: B6Ng01-317L24.b_50_1202

seq1  GAATTCACTGTGCAGTGCAAAGTGGGTGTGGATATTGTTCAGGGTCCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTGCAGTGCAAAGTGGGTGTGGATATTGTTCAGGGTCCAGC  50

seq1  TAGCAAACAAATAGCATCAACCCCCAAGGTTGACTGTCCAAGTACTCGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAACAAATAGCATCAACCCCCAAGGTTGACTGTCCAAGTACTCGCC  100

seq1  ATTGGATTTTTATTTTACTTTTTGTGTGACATCAAAGCCCTTGATCATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGATTTTTATTTTACTTTTTGTGTGACATCAAAGCCCTTGATCATTC  150

seq1  ACTTCAAAAGACGGTGAGACCTCCCTGGACTGAGACTCCTTGACCTCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAAAAGACGGTGAGACCTCCCTGGACTGAGACTCCTTGACCTCAGG  200

seq1  TTTTTCTTCCCCCTCTTGTGGATATGCTCAAATGTTGTCTTCTTTGTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTCCCCCTCTTGTGGATATGCTCAAATGTTGTCTTCTTTGTCAT  250

seq1  AGATGCTACTATCATGTGTTTCTTGTTACTTAATTTTTTAAAATATAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTACTATCATGTGTTTCTTGTTACTTAATTTTTTAAAATATAGCA  300

seq1  TTCTGTTTGAAAAGACACCCAGTATTTAAACTCTTAACAACCCCTAGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTTGAAAAGACACCCAGTATTTAAACTCTTAACAACCCCTAGCAC  350

seq1  ACAGATTAGCAATCTTTATCCTCTTTAAATGGTTTTGTCATATACTTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTAGCAATCTTTATCCTCTTTAAATGGTTTTGTCATATACTTCCA  400

seq1  ATTCTAGACTTTATCATCTTGCAAAGTCTGTATCAGTGTTTCTCAACCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGACTTTATCATCTTGCAAAGTCTGTATCAGTGTTTCTCAACCTT  450

seq1  CCTAAAGCTGTGATCCCTCAAGATACTTCCTCATATTGTGGAACTTCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAGCTGTGATCCCTCAAGATACTTCCTCATATTGTGGAACTTCCAA  500

seq1  CCAAAAAAAATTATTTTTGTTACTACCTCCTAATTGCAATTTTCTTATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAAAATTATTTTTGTTACTACCTCCTAATTGCAATTTTCTTATTG  550

seq1  TTGTGAACCATAATGTAAATAAACTATTTTCCAATGGTCATAGGGTACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAACCATAATGTAAATAAACTATTTTCCAATGGTCATAGGGTACCT  600

seq1  AGGTGAAAATGTCTTTTGACCCCATGGGGTTGTGAACTACAGGTTGATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAAAATGTCTTTTGACCCCATGGGGTTGTGAACTACAGGTTGATAA  650

seq1  CCATTTCTCTATAATATCAATCTGCAGCTAATTTTTTTTCTATGAGTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCTCTATAATATCAATCTGCAGCTAATTTTTTTTCTATGAGTTTG  700

seq1  ACTACTCTATGTGTGTTGAATAAAATTAATAGTCTTCTGAAATTATTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTCTATGTGTGTTGAATAAAATTAATAGTCTTCTGAAATTATTTTC  750

seq1  ATTTATTTTTATTTGTGGTGTGTGCACACATCTGTGACAAGTGTGTGGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTTTATTTGTGGTGTGTGCACACATCTGTGACAAGTGTGTGGCA  800

seq1  TGTGTACATATGAAACAGACACAAGAGTAGCACAGCATAGGTACACGTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTACATATGAAACAGACACAAGAGTAGCACAGCATAGGTACACGTGA  850

seq1  GGCCATAGGAATATTTTCAGGAGTCAGTTCTCTCTGAGTGTGGGATCCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATAGGAATATTTTCAGGAGTCAGTTCTCTCTGAGTGTGGGATCCTG  900

seq1  AGATTAAACTCAAATTATCATGTTTACTTGCCAAGTGCTTTATGACATGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAAACTCAAATTATCATGTTTACTTGCCAAGTGCTTTATGACATGA  950

seq1  TTCAACATAATGGCCCATAAAATAC-TATTTGAGGGCT-ACAGTAATGGC  998
      ||||||||||| ||||||||||||| |||||||||||| |||||||||||
seq2  TTCAACATAAT-GCCCATAAAATACTTATTTGAGGGCTAACAGTAATGGC  999

seq1  TTTGTTGTTAAGAGCAGTTGCAGCTCTTCCAAGGGTCCCACGTTCAATTC  1048
      |||| |||| |||||||||||||||  | |||||   ||||| |||||  
seq2  TTTG-TGTT-AGAGCAGTTGCAGCTTCTTCAAGG--TCCACG-TCAAT--  1042

seq1  CCAG-TATCTTTTTCAGGAGTCTTGCAAATATCTGTTGCTGCAGACCCTC  1097
      |||| | ||||||||||||||| ||| |||||||| ||||||||| ||||
seq2  CCAGTTTTCTTTTTCAGGAGTC-TGC-AATATCTG-TGCTGCAGA-CCTC  1088

seq1  TGGGTCCCTTTGT-CTGTGTGGAACGGGTCTCTAGTCGTGGGTGGGCAAA  1146
      ||||| ||||||| |||||||  |||| ||   |||| ||| |||   ||
seq2  TGGGTTCCTTTGTCCTGTGTG--ACGGTTCCTAAGTC-TGGTTGG--CAA  1133

seq1  GCGTAGGATTGACAGACAGA  1166
      |||||||  |||||||||||
seq2  GCGTAGGTATGACAGACAGA  1153


seq1: chr3_45488080_45489137
seq2: B6Ng01-317L24.g_66_1114 (reverse)

seq1  TCTCTCTTCTCTTTTTCTGATGTCTATGGATAAAGATGTAGC-TCTCAAC  49
             ||||| | ||||||||||||||||||||||||||| |||| ||
seq2  -------TCTCTCTATCTGATGTCTATGGATAAAGATGTAGCTTCTC-AC  42

seq1  TACTCTAGCACCATACCTGCAAGCAACCATGTCCCACATTTCAATGACAA  99
      |||||||||| ||||||||||||||| ||||| |||||||||||||||||
seq2  TACTCTAGCA-CATACCTGCAAGCAAACATGT-CCACATTTCAATGACAA  90

seq1  TGGACTAAATCTCTGAAGCTCTAAGCAAGCCTCCAATCAAAGACTTTCTT  149
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGGACTAAATCTCTGAAGCTCTAAGCAAG-CTCCAATCAAAGACTTTCTT  139

seq1  GTAAAAATGTTGTCTTGGTCATGCTGTCTCTAAGACACTATGTGTGG-AA  198
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTAAAAATGTTGTCTTGGTCATGCTGTCTCTAAGACACTATGTGTGGAAA  189

seq1  AATCATGACTTTCTCCTATTTTCTCTACCTACTTGTTGTGGGAAATATTA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATGACTTTCTCCTATTTTCTCTACCTACTTGTTGTGGGAAATATTA  239

seq1  AAAAAGATTGGCACCATCCCAAGCTACTCTCTGCCCTGGTGGTCTAACCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGATTGGCACCATCCCAAGCTACTCTCTGCCCTGGTGGTCTAACCA  289

seq1  CCACTAGGCCAGCCCCGGGCTGCAGTCTTCCCAGCTCTGGTTTGCCTGCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAGGCCAGCCCCGGGCTGCAGTCTTCCCAGCTCTGGTTTGCCTGCC  339

seq1  TCAGAGCCATCCATACCTTCTCAGCCACCTACCCTCTGTGGCTAGTTGTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGCCATCCATACCTTCTCAGCCACCTACCCTCTGTGGCTAGTTGTT  389

seq1  ACAAATCCCCTTAAACCAGTAAATCAAAACTCTAGAAATTTATAATTAAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATCCCCTTAAACCAGTAAATCAAAACTCTAGAAATTTATAATTAAT  439

seq1  CAGTCAGATTTATATGTCAATAAATTCTCAATTCACAAGATGCCCATACA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGATTTATATGTCAATAAATTCTCAATTCACAAGATGCCCATACA  489

seq1  ATAATTTCAGAGTCAATTGATAATGATTAAAGCTGCCCATCTAGATTAGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTCAGAGTCAATTGATAATGATTAAAGCTGCCCATCTAGATTAGA  539

seq1  CGAGTTATTTCAAATTTTCTATCCTTTATGATATTCACAGCTACCTGTGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTTATTTCAAATTTTCTATCCTTTATGATATTCACAGCTACCTGTGG  589

seq1  CTATTTATAGCCCTGCAGAATCTGGATCATCTTCCTCTCGCGTCATCTTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTATAGCCCTGCAGAATCTGGATCATCTTCCTCTCGCGTCATCTTC  639

seq1  CTTCCTCCTCTCTCTGTCTCTGTCCCTCTCTGAAACCCTTAGCTCCTCCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCCTCTCTCTGTCTCTGTCCCTCTCTGAAACCCTTAGCTCCTCCT  689

seq1  CCCTTTTCTCTGTCCAGTCAGAGGCTCCTTGTTGTATTAATATTTAAATT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTCTCTGTCCAGTCAGAGGCTCCTTGTTGTATTAATATTTAAATT  739

seq1  AACTGAACAGAGAAAATTCTGCTACACCTACCTTTAGTGCATTTTGTTTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAACAGAGAAAATTCTGCTACACCTACCTTTAGTGCATTTTGTTTA  789

seq1  TTGGGTGATGGGTTCACATAAAATGTCAAAATAGAAAACTTAGTTCAGTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTGATGGGTTCACATAAAATGTCAAAATAGAAAACTTAGTTCAGTA  839

seq1  ATTGGTAGTCAAATGTCATTCCTATTTAGGCCAAACAACATGCTCATCAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTAGTCAAATGTCATTCCTATTTAGGCCAAACAACATGCTCATCAA  889

seq1  ATAAAGGCTCCTACTGCTGAACCTGGTAACTTGAATGATTCCTGGGCCCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGGCTCCTACTGCTGAACCTGGTAACTTGAATGATTCCTGGGCCCT  939

seq1  ACATGTTAGAAGTAGAAAACTGAGTCTCCCAAGTTGCCCTCTGCCTTCTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTTAGAAGTAGAAAACTGAGTCTCCCAAGTTGCCCTCTGCCTTCTA  989

seq1  CATGTTTGCTTTTATACATTCCATCTAACTCTCTCTGAATTAAGAAATAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTGCTTTTATACATTCCATCTAACTCTCTCTGAATTAAGAAATAC  1039

seq1  AAAAGAATTC  1058
      ||||||||||
seq2  AAAAGAATTC  1049


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