BAC Information

Click to search

BAC

Clone NameB6Ng01-318H01
Chromosome3 (Build37)
Map Location 79,293,420 - 79,428,521
singlet/doubletdoublet
Overlap geneLOC100041793, LOC667613, Ppid, Etfdh
Upstream geneLOC383883, LOC100041748, LOC100041716, LOC100041725, LOC100041766, Rapgef2, LOC100041741
Downstream gene4930579G24Rik, Rxfp1, Tmem144, 1110032E23Rik, EG626797
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318H01.bB6Ng01-318H01.g
ACCGA108328GA108329
length1,165801
definitionB6Ng01-318H01.b B6Ng01-318H01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,293,420 - 79,294,565)(79,427,725 - 79,428,521)
sequence
gaattcaaaaataaatgaacacaggttggcaaactacaactaacacaaat
ctgattgctaccattttgtaaataaagttttattgggacccaggaatgtt
catttatttatgcattatctgttgagtgcttctgcaggacaatggcaaag
ttaggtggcagtgtagaaacccttaagagaaaaagcacaccatccctaac
ataaaaacattcatttagaaaataatgtacgagggtgtagtacccatcta
tcatgcttatggctctgtgcttgatctcaaacactgcatacacacacaca
cacacacacacacactctctctctctctctcactcacacacatacacaca
cacacacacacactctctctctctctcactcacacacacacacacacaca
cacacacacactctctctctctctctcactcacacacacacacacacaca
cacacacacacaataaaaaaggttaaaaaattcagtgtcctttttcagaa
tttataatcatttttgaaatctatttttaaatgtatgcatacaagcttag
aagccgcacaggtttctaggacatcacacagtcatttgtaggtgtttttg
tggtggtgagaatccaatcctggtctctttgcatgccatacaagcactca
atcaccgagttacattctcagctccacacagcattctcatggtaaagaaa
tacagatcaagagctgggcataccagtaatcccagcacggaagagacagg
caggaggcctgagtgtgagtgtgagtcagccagctacacagtaagactcc
atctagaataggtgggtggggcacacacagatacgcaaggacagagaaag
cacgtgctaggttgaaaatgagactgctaggtgactcaactctactgatt
tcttgttaacgtgctggctttctaaatcaaaccacctatcttgttttaga
taagaattacaacaatggctcctcctcactagcatatgcccaacttctaa
tgcagatatgtacatacttaaatggtacggtgaggatggggcaagcctct
gttttaagcttacatggccctccccaaatgtaaaacttaacctcagaacc
tctcccacggcaatataagagaatcagccctgaaatggattaaccagaaa
tcttctctcccaaat
gaattcatttgacataaagagcaatgtatacatcctttgctcattttttt
tttgagaaagcaaaacaaaagtaacaacaacaaaaaaacatatttttttc
tatttttatgccatttaatgagtaactatccccctgcatctatttttatt
atactatcagccattcattttattacactgtctctcacttgttttaagat
tgtaaattttagatgaagaggtgcattatcggttaagactgctcttccag
aggtcctgagttcaatttccagcaaccacatggtggctcacaaccatcta
taatgggattctatgccctctccttgtgtgtctgaaggcagcaacagtgt
atttacatatataaaataaataaatcttaaataaaacaacaacaaaaaaa
aaaacaacaaaaaacacattatggggctggagagatggctcagcagtcaa
gagcacctgatgctcttccagaggatccaggttcaattcccagcacccac
atgtcagctcacaactgtctgttactctaagtatagggatccaaccccct
cacacagactttgtgtgcaggcaaaacatgaatgcataaaataaaaataa
aataaatgatttaaaagagttgaaaattttgcttcatgagcaaaagttag
ctgtatcactcataagaaaaataattttccattttgatttgtgttaatta
ttaagaatattcattcagagctgggcagtggtagcacttgccttttatcc
cagcacttgggaaggcagtaggcaggtggatttctgagttctaggccagc
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_79293420_79294565
seq2: B6Ng01-318H01.b_44_1208

seq1  GAATTCAAAAATAAATGAACACAGGTTGGCAAACTACAACTAACACAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAATAAATGAACACAGGTTGGCAAACTACAACTAACACAAAT  50

seq1  CTGATTGCTACCATTTTGTAAATAAAGTTTTATTGGGACCCAGGAATGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTGCTACCATTTTGTAAATAAAGTTTTATTGGGACCCAGGAATGTT  100

seq1  CATTTATTTATGCATTATCTGTTGAGTGCTTCTGCAGGACAATGGCAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATTTATGCATTATCTGTTGAGTGCTTCTGCAGGACAATGGCAAAG  150

seq1  TTAGGTGGCAGTGTAGAAACCCTTAAGAGAAAAAGCACACCATCCCTAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTGGCAGTGTAGAAACCCTTAAGAGAAAAAGCACACCATCCCTAAC  200

seq1  ATAAAAACATTCATTTAGAAAATAATGTACGAGGGTGTAGTACCCATCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAACATTCATTTAGAAAATAATGTACGAGGGTGTAGTACCCATCTA  250

seq1  TCATGCTTATGGCTCTGTGCTTGATCTCAAACACTGCATACACACACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCTTATGGCTCTGTGCTTGATCTCAAACACTGCATACACACACACA  300

seq1  CACACACACACACACTCTCTCTCTCTCTCTCACTCACACACATACACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACTCTCTCTCTCTCTCTCACTCACACACATACACACA  350

seq1  CACACACACACACTCTCTCTCTCTCTCACTCACACACACACACACACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACTCTCTCTCTCTCTCACTCACACACACACACACACACA  400

seq1  CACACACACACTCTCTCTCTCTCTCTCACTCACACACACACACACACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACTCTCTCTCTCTCTCTCACTCACACACACACACACACACA  450

seq1  CACACACACACAATAAAAAAGGTTAAAAAATTCAGTGTCCTTTTTCAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACAATAAAAAAGGTTAAAAAATTCAGTGTCCTTTTTCAGAA  500

seq1  TTTATAATCATTTTTGAAATCTATTTTTAAATGTATGCATACAAGCTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAATCATTTTTGAAATCTATTTTTAAATGTATGCATACAAGCTTAG  550

seq1  AAGCCGCACAGGTTTCTAGGACATCACACAGTCATTTGTAGGTGTTTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCGCACAGGTTTCTAGGACATCACACAGTCATTTGTAGGTGTTTTTG  600

seq1  TGGTGGTGAGAATCCAATCCTGGTCTCTTTGCATGCCATACAAGCACTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTGAGAATCCAATCCTGGTCTCTTTGCATGCCATACAAGCACTCA  650

seq1  ATCACCGAGTTACATTCTCAGCTCCACACAGCATTCTCATGGTAAAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCGAGTTACATTCTCAGCTCCACACAGCATTCTCATGGTAAAGAAA  700

seq1  TACAGATCAAGAGCTGGGCATACCAGTAATCCCAGCACGGAAGAGACAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATCAAGAGCTGGGCATACCAGTAATCCCAGCACGGAAGAGACAGG  750

seq1  CAGGAGGCCTGAGTGTGAGTGTGAGTCAGCCAGCTACACAGTAAGACTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGCCTGAGTGTGAGTGTGAGTCAGCCAGCTACACAGTAAGACTCC  800

seq1  ATCTAGAATAGGTGGGTGGGGCACACACAGATACGC-AGGACAGAGAAAG  849
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATCTAGAATAGGTGGGTGGGGCACACACAGATACGCAAGGACAGAGAAAG  850

seq1  CACGTGCTAGGTTGAAAATGAGACTGCTAGGTGACTCAACTCTACTGATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGCTAGGTTGAAAATGAGACTGCTAGGTGACTCAACTCTACTGATT  900

seq1  TCTTGTTAACGTGCTGGCTTTCTAAATCAAA-CACCTATCTTGTTTTAGA  948
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCTTGTTAACGTGCTGGCTTTCTAAATCAAACCACCTATCTTGTTTTAGA  950

seq1  TAAGAATTAC-ACAATGGCTCCTCCTCACTAGCATATG-CCAACTTCTAA  996
      |||||||||| ||||||||||||||||||||||||||| |||||||||||
seq2  TAAGAATTACAACAATGGCTCCTCCTCACTAGCATATGCCCAACTTCTAA  1000

seq1  TGCAGATATGTACATACTT-AATGGTACGGTGAGGATGGGGC-AGGCTCT  1044
      ||||||||||||||||||| |||||||||||||||||||||| || ||||
seq2  TGCAGATATGTACATACTTAAATGGTACGGTGAGGATGGGGCAAGCCTCT  1050

seq1  GTTTTAAGC-TACATGGC---TCCCACATGTAAAAACTTA--CTCAGA--  1086
      ||||||||| ||||||||    |||| |||| ||||||||  ||||||  
seq2  GTTTTAAGCTTACATGGCCCTCCCCAAATGT-AAAACTTAACCTCAGAAC  1099

seq1  CTCT-CCACGGCATAAAAAGGAAATTCAGCCCTGAA--TGAGTAACACAG  1133
      |||| |||||||| | | | || | |||||||||||   || |||| |||
seq2  CTCTCCCACGGCA-ATATAAGAGAATCAGCCCTGAAATGGATTAAC-CAG  1147

seq1  A-----TCTCTCCCAAAT  1146
      |     ||||||||||||
seq2  AAATCTTCTCTCCCAAAT  1165

seq1: chr3_79427725_79428521
seq2: B6Ng01-318H01.g_70_870 (reverse)

seq1  GGCTGGCCTCGAACTCAGAAATCCACCTGCCT-CTGCCTT-CCAAGTGCT  48
      ||||||||| |||||||||||||||||||||| ||||||| |||||||||
seq2  GGCTGGCCTAGAACTCAGAAATCCACCTGCCTACTGCCTTCCCAAGTGCT  50

seq1  GGGATTAAAGGCAAGTGCTACCACTGCCCAGCTCTGAATGAATATTCTTA  98
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAAAAGGCAAGTGCTACCACTGCCCAGCTCTGAATGAATATTCTTA  100

seq1  ATAATTAACACAAATCAAAATGGAAAATTATTTTTCTTATGAGTGATACA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTAACACAAATCAAAATGGAAAATTATTTTTCTTATGAGTGATACA  150

seq1  GCTAACTTTTGCTCATGAAGCAAAA-TTTCAACTCTTTTAAATCATTTAT  197
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GCTAACTTTTGCTCATGAAGCAAAATTTTCAACTCTTTTAAATCATTTAT  200

seq1  TTTATTTTTATTTTATGCATTCATGTTTTGCCTGCACAC-AAGTCTGTGT  246
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTTATTTTTATTTTATGCATTCATGTTTTGCCTGCACACAAAGTCTGTGT  250

seq1  GAGGGGGTTGGATCCCTATACTTAGAGTAACAGACAGTTGTGAGCTGACA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGGTTGGATCCCTATACTTAGAGTAACAGACAGTTGTGAGCTGACA  300

seq1  TGTGGGTGCTGGGAATTGAACCTGGATCCTCTGGAAGAGCATCAGGTGCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTGCTGGGAATTGAACCTGGATCCTCTGGAAGAGCATCAGGTGCT  350

seq1  CTTGACTGCTGAGCCATCTCTCCAGCCCCATAATGTGTTTTTTGTTGTTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACTGCTGAGCCATCTCTCCAGCCCCATAATGTGTTTTTTGTTGTTT  400

seq1  TTTTTTTTGTTGTTGTTTTATTTAAGATTTATTTATTTTATATATGTAAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTGTTGTTGTTTTATTTAAGATTTATTTATTTTATATATGTAAA  450

seq1  TACACTGTTGCTGCCTTCAGACACACAAGGAGAGGGCATAGAATCCCATT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTGTTGCTGCCTTCAGACACACAAGGAGAGGGCATAGAATCCCATT  500

seq1  ATAGATGGTTGTGAGCCACCATGTGGTTGCTGGAAATTGAACTCAGGACC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATGGTTGTGAGCCACCATGTGGTTGCTGGAAATTGAACTCAGGACC  550

seq1  TCTGGAAGAGCAGTCTTAACCGATAATGCACCTCTTCATCTAAAATTTAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAGAGCAGTCTTAACCGATAATGCACCTCTTCATCTAAAATTTAC  600

seq1  AATCTTAAAACAAGTGAGAGACAGTGTAATAAAATGAATGGCTGATAGTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTAAAACAAGTGAGAGACAGTGTAATAAAATGAATGGCTGATAGTA  650

seq1  TAATAAAAATAGATGCAGGGGGATAGTTACTCATTAAATGGCATAAAAAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAAATAGATGCAGGGGGATAGTTACTCATTAAATGGCATAAAAAT  700

seq1  AGAAAAAAATATGTTTTTTTGTTGTTGTTACTTTTGTTTTGCTTTCTCAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAATATGTTTTTTTGTTGTTGTTACTTTTGTTTTGCTTTCTCAA  750

seq1  AAAAAAAATGAGCAAAGGATGTATACATTGCTCTTTATGTCAAATGAATT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAATGAGCAAAGGATGTATACATTGCTCTTTATGTCAAATGAATT  800

seq1  C  797
      |
seq2  C  801