BAC Information

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BAC

Clone NameB6Ng01-318I06
Chromosome3 (Build37)
Map Location 13,395,110 - 13,531,899
singlet/doubletdoublet
Overlap geneLOC100039861, 0710005M24Rik
Upstream geneEG621965, LOC100039798, EG668033, LOC668037, LOC100039823
Downstream geneLOC100041679, LOC100041667, LOC100039882, EG622229, LOC668062, Slc7a12, LOC668068
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318I06.bB6Ng01-318I06.g
ACCGA108384GA108385
length1,0031,027
definitionB6Ng01-318I06.b B6Ng01-318I06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,395,110 - 13,395,801)(13,530,870 - 13,531,899)
sequence
gaattcaacagtcctaccttgggactaggggacattttcactgaccagtg
ggggaaggagctcagctattcattggtgtttgggtaggctgcaacgtcca
cgtggtagcaggtgatgtgaacctgcaagtttctaaatccaagtcacact
gcaccaatgttgtgttttataaaaaaagaaagaaagagccaaaatatgtt
tgtagggatgatgttatcttttggtagtcctaagaaaattgagatgttga
ccaagtcttagtaaaaccagctgcatcatttgttttccagtttttgcatg
ataggaaaatgcaagagttaattgaagttctgcctaaagcagtctgtaag
gctggatcaatcagggtcagggctctgaagatgtactggaaacaagttta
tgatgaagcaggtattgcagtagtctgtggttggatcacctgagctactt
gtattctttcatgtttggtccctaaactctgcaaacatataaactttcaa
aggtaatatacatttgtgcaaaatcacatgtatggaattggcagtgtgca
cgattcagctcaagtttgcctcaaattttataagtcagtttagactgtat
ggccaaactgtaatatacaattcttccatgccatatttaaaaaatgtcac
atagttatttttgaggattctgtatccaacaagatttattggctatgcat
agcagaattcctggctggatatattcatgtctcagccattttcagaggtg
tttcagttaactattttgttcttcttcttggattcttccttcatagtgca
gccttcagatctctcccctggtcaaatctaatctttattaatttatatga
aatggatagcttctcttttcctgttgaaacaaagacaaaatatcttccct
aacacaataatttttgacctgccattctgaagttgatacatatctaggtt
gatttaatttaatcggtctttttctaaaatctagtgtttttcagaactgt
gct

gaattcatatcatcaccttgtgacattcactctttagtccttaaacttac
ctgtcaccaacatgctggcttccctgtcctaagttatttcttagaaatcg
tgttgcccttattggtactcagtaaatatcagttatcagaattgattgta
ggaaaaggccaagattcttcatacctcagatctcaggaagtcaggaggct
aaagccagcaacttctgattggcactaattagaattctacaaggagcaga
acttaggctctcaaagcttatactctttataatatgctacatgaaacatt
ttttttcagaatccacatttcacattacttaaaaactaataatattaatg
catgaaaatataatcactatctaattttatgcctttaaaatttgcttgaa
atcacagatcagccagatatttttctattatttgtttatctctgttctgc
tttatcaaacatagaaatgtaatctctctagaataatattaacaagccct
gatagattatgttagaaaatctagccactagcacaactaactcaccagtg
atcaattaaaacaccagctttctttttgtctttgtcatatttataatgta
aaactatgttgaggaaagaaattaccacatctttagcataagcatgcagt
ctcagggtgaattgctgaaggacttggagagacttcttaacactgctagg
cttcagtttcttcatctacaccagggcaacaatgccaatcattcactcat
gacaatgtcatcatggaaaagtcaggagacttaccagccctacagaaaca
taatggtaccaggtattcatataattgtgcaactagtttcagtcctgata
aaatttaaaatgttccctgggtatacatgcagggagttaattattttctc
aacataataactatgatgtgttagtgcaaatgtgttctgctcttttctgt
taaacttttttaatttcttcagaaaaatattttaatattaaaaggaaatg
ttattattattatactatcatgtagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_13395110_13395801
seq2: B6Ng01-318I06.b_43_734

seq1  GAATTCAACAGTCCTACCTTGGGACTAGGGGACATTTTCACTGACCAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACAGTCCTACCTTGGGACTAGGGGACATTTTCACTGACCAGTG  50

seq1  GGGGAAGGAGCTCAGCTATTCATTGGTGTTTGGGTAGGCTGCAACGTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAGGAGCTCAGCTATTCATTGGTGTTTGGGTAGGCTGCAACGTCCA  100

seq1  CGTGGTAGCAGGTGATGTGAACCTGCAAGTTTCTAAATCCAAGTCACACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGTAGCAGGTGATGTGAACCTGCAAGTTTCTAAATCCAAGTCACACT  150

seq1  GCACCAATGTTGTGTTTTATAAAAAAAGAAAGAAAGAGCCAAAATATGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAATGTTGTGTTTTATAAAAAAAGAAAGAAAGAGCCAAAATATGTT  200

seq1  TGTAGGGATGATGTTATCTTTTGGTAGTCCTAAGAAAATTGAGATGTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGGATGATGTTATCTTTTGGTAGTCCTAAGAAAATTGAGATGTTGA  250

seq1  CCAAGTCTTAGTAAAACCAGCTGCATCATTTGTTTTCCAGTTTTTGCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTCTTAGTAAAACCAGCTGCATCATTTGTTTTCCAGTTTTTGCATG  300

seq1  ATAGGAAAATGCAAGAGTTAATTGAAGTTCTGCCTAAAGCAGTCTGTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAAAATGCAAGAGTTAATTGAAGTTCTGCCTAAAGCAGTCTGTAAG  350

seq1  GCTGGATCAATCAGGGTCAGGGCTCTGAAGATGTACTGGAAACAAGTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGATCAATCAGGGTCAGGGCTCTGAAGATGTACTGGAAACAAGTTTA  400

seq1  TGATGAAGCAGGTATTGCAGTAGTCTGTGGTTGGATCACCTGAGCTACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAAGCAGGTATTGCAGTAGTCTGTGGTTGGATCACCTGAGCTACTT  450

seq1  GTATTCTTTCATGTTTGGTCCCTAAACTCTGCAAACATATAAACTTTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCTTTCATGTTTGGTCCCTAAACTCTGCAAACATATAAACTTTCAA  500

seq1  AGGTAATATACATTTGTGCAAAATCACATGTATGGAATTGGCAGTGTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAATATACATTTGTGCAAAATCACATGTATGGAATTGGCAGTGTGCA  550

seq1  CGATTCAGCTCAAGTTTGCCTCAAATTTTATAAGTCAGTTTAGACTGTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTCAGCTCAAGTTTGCCTCAAATTTTATAAGTCAGTTTAGACTGTAT  600

seq1  GGCCAAACTGTAATATACAATTCTTCCATGCCATATTTAAAAAATGTCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAACTGTAATATACAATTCTTCCATGCCATATTTAAAAAATGTCAC  650

seq1  ATAGTTATTTTTGAGGATTCTGTATCCAACAAGATTTATTGG  692
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTATTTTTGAGGATTCTGTATCCAACAAGATTTATTGG  692


seq1: chr3_13530870_13531899
seq2: B6Ng01-318I06.g_65_1091 (reverse)

seq1  TTCTACAATGATAGTTAATAAATAATAAATAACATTTCC-TTTAATATTA  49
      |||||| ||||||||  || |||||| |||||||||||| ||||||||||
seq2  TTCTAC-ATGATAGT--AT-AATAAT-AATAACATTTCCTTTTAATATTA  45

seq1  AAATA-TTTTCTGAAGAAATTAAAAAGTTTTAACAGAAAAGAGCAGAACA  98
      ||||| ||||||||||||||||||||  ||||||||||||||||||||||
seq2  AAATATTTTTCTGAAGAAATTAAAAAAGTTTAACAGAAAAGAGCAGAACA  95

seq1  CATTTGCACTAACACATCATAGTTATTATGTTGAGAAAATAATTAACTCC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCACTAACACATCATAGTTATTATGTTGAGAAAATAATTAACTCC  145

seq1  CTGCATGTATACCCAGGGAACATTTTAAATTTTATCAGGACTGAAACTAG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGTATACCCAGGGAACATTTTAAATTTTATCAGGACTGAAACTAG  195

seq1  TTGCACAATTATATGAATACCTGGTACCATTATGTTTCTGTAGGGCTGGT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACAATTATATGAATACCTGGTACCATTATGTTTCTGTAGGGCTGGT  245

seq1  AAGTCTCCTGACTTTTCCATGATGACATTGTCATGAGTGAATGATTGGCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTCCTGACTTTTCCATGATGACATTGTCATGAGTGAATGATTGGCA  295

seq1  TTGTTGCCCTGGTGTAGATGAAGAAACTGAAGCCTAGCAGTGTTAAGAAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGCCCTGGTGTAGATGAAGAAACTGAAGCCTAGCAGTGTTAAGAAG  345

seq1  TCTCTCCAAGTCCTTCAGCAATTCACCCTGAGACTGCATGCTTATGCTAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCAAGTCCTTCAGCAATTCACCCTGAGACTGCATGCTTATGCTAA  395

seq1  AGATGTGGTAATTTCTTTCCTCAACATAGTTTTACATTATAAATATGACA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGGTAATTTCTTTCCTCAACATAGTTTTACATTATAAATATGACA  445

seq1  AAGACAAAAAGAAAGCTGGTGTTTTAATTGATCACTGGTGAGTTAGTTGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAAAAGAAAGCTGGTGTTTTAATTGATCACTGGTGAGTTAGTTGT  495

seq1  GCTAGTGGCTAGATTTTCTAACATAATCTATCAGGGCTTGTTAATATTAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTGGCTAGATTTTCTAACATAATCTATCAGGGCTTGTTAATATTAT  545

seq1  TCTAGAGAGATTACATTTCTATGTTTGATAAAGCAGAACAGAGATAAACA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAGAGATTACATTTCTATGTTTGATAAAGCAGAACAGAGATAAACA  595

seq1  AATAATAGAAAAATATCTGGCTGATCTGTGATTTCAAGCAAATTTTAAAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAGAAAAATATCTGGCTGATCTGTGATTTCAAGCAAATTTTAAAG  645

seq1  GCATAAAATTAGATAGTGATTATATTTTCATGCATTAATATTATTAGTTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAAATTAGATAGTGATTATATTTTCATGCATTAATATTATTAGTTT  695

seq1  TTAAGTAATGTGAAATGTGGATTCTGAAAAAAAATGTTTCATGTAGCATA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTAATGTGAAATGTGGATTCTGAAAAAAAATGTTTCATGTAGCATA  745

seq1  TTATAAAGAGTATAAGCTTTGAGAGCCTAAGTTCTGCTCCTTGTAGAATT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAGAGTATAAGCTTTGAGAGCCTAAGTTCTGCTCCTTGTAGAATT  795

seq1  CTAATTAGTGCCAATCAGAAGTTGCTGGCTTTAGCCTCCTGACTTCCTGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTAGTGCCAATCAGAAGTTGCTGGCTTTAGCCTCCTGACTTCCTGA  845

seq1  GATCTGAGGTATGAAGAATCTTGGCCTTTTCCTACAATCAATTCTGATAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGAGGTATGAAGAATCTTGGCCTTTTCCTACAATCAATTCTGATAA  895

seq1  CTGATATTTACTGAGTACCAATAAGGGCAACACGATTTCTAAGAAATAAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATATTTACTGAGTACCAATAAGGGCAACACGATTTCTAAGAAATAAC  945

seq1  TTAGGACAGGGAAGCCAGCATGTTGGTGACAGGTAAGTTTAAGGACTAAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGACAGGGAAGCCAGCATGTTGGTGACAGGTAAGTTTAAGGACTAAA  995

seq1  GAGTGAATGTCACAAGGTGATGATATGAATTC  1030
      ||||||||||||||||||||||||||||||||
seq2  GAGTGAATGTCACAAGGTGATGATATGAATTC  1027


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