BAC Information

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BAC

Clone NameB6Ng01-318L11
Chromosome3 (Build37)
Map Location 94,201,035 - 94,202,132
singlet/doubletsinglet
Overlap geneRorc
Upstream geneRptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659
Downstream geneLingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318L11.bB6Ng01-318L11.g
ACCGA108532GA108533
length1,1561,100
definitionB6Ng01-318L11.b B6Ng01-318L11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccagaacttttatgatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctatcttgtgaaaaagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactatttataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcagctt
tggtgcctggtatctgtccagtaatttgttcatttcatccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcagttctgattttgttaat
taggattttgtctctgtgccctctagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttcttgtttccacttggttgatttcacccctgagtttgattat
ttcctgccctctactcctcttgggtgaatttgcttcccttttttttctag
agcttttagatgtgttgtcaagctgctagtatgtgctctctcccgttttc
ttcttggaggcactcagagctatgagtttccctcttagaaatgcctttca
ttgtgtccaaagtttggtacgttgtggcttcattttcattaactctaaaa
aggtcttaattttttcttatcctccttgcccaaggtatcattgagaagag
tgttggttcagttccacgtgacgttgcttcctgtaactttttgcattatt
gcagac
gaattctggtgtcctgtatgaattagaacctcaggcttctcagagctgca
acctcaaggaagagattgtgtgccagagggaaagtctacagaatggtgtc
actgggggcagagcctctgtgtgctccacctgtgtggatgtgtgtctctg
attagactgctaacgaatctgacacttttaaagtgtgcaaagaggtttcc
attctaatttttccagtgatgtttttcttcatacccaaaccccataaaac
agttatcttgggaccttatctccaccccaccctcattctttacacatcca
ggcattttaggtcccagaaaacaggcagagggggtcaacaacatttctta
actaggaagaagaaaggcagaaaagtctcaggaatctatattcttattat
atacaggtccttctgggggcttgccaccagtctctgagctagatccatgt
ccccccaggaggacccatggggaaatacaatgaggtattgaaaggactgt
tattagctttcaagcctagatttgagttctccttatcccaggtacctgga
tttatccctgctgattgtcagtctgttttttatttgacttggtcatccta
tctctatcccatctaccccacagcttccagaagccagggtggaacttatg
ggaaatcaaacataacaagccttttctccatcacttgctgctgttgtcct
acaaggcaagcctaggggcagaaaatcagtcttaggatttgcttactcct
agggataccacccttcatagagtgcagaaagggaaaggctgggtgaaggg
agtccagggagacgggtcagagggctgaaaggaaatagaaagttgtcctt
cctccagatcactttgacagcccctcagggattcaacatcagtgctgaag
agttccttatagagtggagggaaggcggcttggaccacgatgggggtggg
aggtgctgggaagatctgcagcttttcacatgtggctgcacagctcggag
ttttccttgggtggcagctgaggatagttaggagggtatgagtacttcgg
tgctttagcagagctaacacatctcacctggttaactggagctaggatga

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_94201035_94202132
seq2: B6Ng01-318L11.g_68_1167 (reverse)

seq1  TCATCCTAGCT-CAG-TAAC--AGTGAGATGTGTTTGCTCTGCT-AAGCA  45
      ||||||||||| ||| ||||   |||||||||||| |||||||| |||||
seq2  TCATCCTAGCTCCAGTTAACCAGGTGAGATGTGTTAGCTCTGCTAAAGCA  50

seq1  CCGAAGTACTCATTCCCTCCTAACCTATCCTCAGCTGCCACCCAAAGGAA  95
      ||||||||||||| ||||||||| ||||||||||||||||||| ||||||
seq2  CCGAAGTACTCATACCCTCCTAA-CTATCCTCAGCTGCCACCC-AAGGAA  98

seq1  AACTCCGGAGCCTGTGCAGCCAACATGTGGAAAAGCTGCAGATCTT-CCA  144
      |||||| ||| |||||||||| |||||| ||||||||||||||||| |||
seq2  AACTCC-GAG-CTGTGCAGCC-ACATGT-GAAAAGCTGCAGATCTTCCCA  144

seq1  GCACCTCC--ACCCCATCGTGGTCCAAGCCGCCTTCCCTCCACTCTATAA  192
      ||||||||   |||||||||||||||||||||||||||||||||||||||
seq2  GCACCTCCCACCCCCATCGTGGTCCAAGCCGCCTTCCCTCCACTCTATAA  194

seq1  GGAACTCTTCAGCACTGATGTTGAATCCCCTGAGGGGCTGTCAAAGTGAT  242
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GGAACTCTTCAGCACTGATGTTGAAT-CCCTGAGGGGCTGTCAAAGTGAT  243

seq1  CTGGAGGAAGGACAACTTTCTATTTCC-TTCAGCCCTCTGACCCGTCTCC  291
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTGGAGGAAGGACAACTTTCTATTTCCTTTCAGCCCTCTGACCCGTCTCC  293

seq1  CTGGACTCCCTTCACCCAGCCTTTCCCTTTCTGCACTCTATGAAGGGTGG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACTCCCTTCACCCAGCCTTTCCCTTTCTGCACTCTATGAAGGGTGG  343

seq1  TATCCCTAGGAGTAAGCAAATCCTAAGACTGATTTTCTGCCCCTAGGCTT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCTAGGAGTAAGCAAATCCTAAGACTGATTTTCTGCCCCTAGGCTT  393

seq1  GCCTTGTAGGACAACAGCAGCAAGTGATGGAGAAAAGGCTTGTTATGTTT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGTAGGACAACAGCAGCAAGTGATGGAGAAAAGGCTTGTTATGTTT  443

seq1  GATTTCCCATAAGTTCCACCCTGGCTTCTGGAAGCTGTGGGGTAGATGGG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCCCATAAGTTCCACCCTGGCTTCTGGAAGCTGTGGGGTAGATGGG  493

seq1  ATAGAGATAGGATGACCAAGTCAAATAAAAAACAGACTGACAATCAGCAG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGATAGGATGACCAAGTCAAATAAAAAACAGACTGACAATCAGCAG  543

seq1  GGATAAATCCAGGTACCTGGGATAAGGAGAACTCAAATCTAGGCTTGAAA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAATCCAGGTACCTGGGATAAGGAGAACTCAAATCTAGGCTTGAAA  593

seq1  GCTAATAACAGTCCTTTCAATACCTCATTGTATTTCCCCATGGGTCCTCC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATAACAGTCCTTTCAATACCTCATTGTATTTCCCCATGGGTCCTCC  643

seq1  TGGGGGGACATGGATCTAGCTCAGAGACTGGTGGCAAGCCCCCAGAAGGA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGGACATGGATCTAGCTCAGAGACTGGTGGCAAGCCCCCAGAAGGA  693

seq1  CCTGTATATAATAAGAATATAGATTCCTGAGACTTTTCTGCCTTTCTTCT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTATATAATAAGAATATAGATTCCTGAGACTTTTCTGCCTTTCTTCT  743

seq1  TCCTAGTTAAGAAATGTTGTTGACCCCCTCTGCCTGTTTTCTGGGACCTA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGTTAAGAAATGTTGTTGACCCCCTCTGCCTGTTTTCTGGGACCTA  793

seq1  AAATGCCTGGATGTGTAAAGAATGAGGGTGGGGTGGAGATAAGGTCCCAA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCCTGGATGTGTAAAGAATGAGGGTGGGGTGGAGATAAGGTCCCAA  843

seq1  GATAACTGTTTTATGGGGTTTGGGTATGAAGAAAAACATCACTGGAAAAA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACTGTTTTATGGGGTTTGGGTATGAAGAAAAACATCACTGGAAAAA  893

seq1  TTAGAATGGAAACCTCTTTGCACACTTTAAAAGTGTCAGATTCGTTAGCA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATGGAAACCTCTTTGCACACTTTAAAAGTGTCAGATTCGTTAGCA  943

seq1  GTCTAATCAGAGACACACATCCACACAGGTGGAGCACACAGAGGCTCTGC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAATCAGAGACACACATCCACACAGGTGGAGCACACAGAGGCTCTGC  993

seq1  CCCCAGTGACACCATTCTGTAGACTTTCCCTCTGGCACACAATCTCTTCC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGTGACACCATTCTGTAGACTTTCCCTCTGGCACACAATCTCTTCC  1043

seq1  TTGAGGTTGCAGCTCTGAGAAGCCTGAGGTTCTAATTCATACAGGACACC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGTTGCAGCTCTGAGAAGCCTGAGGTTCTAATTCATACAGGACACC  1093

seq1  AGAATTC  1098
      |||||||
seq2  AGAATTC  1100