BAC Information

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BAC

Clone NameB6Ng01-319B13
Chromosome3 (Build37)
Map Location 81,182,473 - 81,183,563
singlet/doubletsinglet
Overlap genenone
Upstream geneEG626797, Gria2, Glrb, EG626841, Pdgfc
Downstream geneLOC229443, LOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3, Mtap9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319B13.bB6Ng01-319B13.g
ACCGA108817GA108818
length1,2081,080
definitionB6Ng01-319B13.b B6Ng01-319B13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctatcagaccttcaaagaatacctagtaccaatacttctcaaaat
attccacaaaatgggaatagaaggaatgctacccaatttgttttataaag
tcacagttatgctgccatctaaaccacacaaagacccaacagaaaaggaa
tacttcagacccatcttgcttctgaatacaaatgcaaaaatatactcagt
aaaattcttgcaagacaaatataagaacatatcatgaacattattcacca
agatcaagtagacctcatctcatggatgcattaatggttcaatataagga
aatccatcaatgtacaatccactatataaacaaactcaagggaaaaaaat
tccaaggtcatctcattagatgttgaaaactcctttgacacatacaatat
cccttcatgttaaaagtcttggaaatatcaggaattcaagacacatatct
aaacacaagaaagcaatatacagcaaaccaatggccaacatcaatttaaa
tggagagaaacttgaatcaatcctattaaaatcagggacaagacaaggca
gcttactctcaccctatttattcaatatagtagttgaagttctaactaga
acaattagaccacaaatgaggtcaaagtgatacaaattggaaaggaagaa
atcaaggtactactatttatttgcacatgacatgatagtatacataagca
acctcaaaaattctaccagagaaatcctacaactgaaaaacaacgtcagc
aaagtggttggacataaaattaagtcaagcaaaccagtagctttcctcta
tacaaaggataaatgggctgagaaagaaattaaaggtaacaatacccttc
ataatagtcacaaatattataaaacatcttggtgtaactctaaccaatca
agtgaaagatatgtatgataagaacttcaagtctctaaagaaagagattg
aagaagacctcaaaatacagaaagctcttccatgctcatgcatcagtagg
attaacaatagtaaaaatggtcattttaacagtagtaatctacagaattc
aatgaaatccccattgaattctaactcaatacttcatctggaacaacagc
aacaacgacaaccaaatccccgacctcaagctatactaacgagccatagt
gaacttaagaacaaacaattgcaatgctattggtacacagtgtgtccgga
acacgaga
gaattcccagttgtctggggcatggcaggcaaggccacaatgtcaggagt
gtgtagtaaaatgtgcactgatctcatggccaggaagctaaagaccaaga
aggattgatgaaggtcatataatcttcctagagttgttctagtaacttga
agaccttcccccccccccacccagaccccacatactatggatttcagcag
atcctaacagtactctgcattctgggaactctgaagtctttgggagacat
tccatgtctgagggacattatcttgttttaccttacttggttttgaaaat
ggacagagaaggttgtatttgctgtgacttttgtttcaacactttttttc
tgttctgcattagtagacagattgagagggagctccatcgaaaggtggaa
atttccccctggggaagtaagaagcatccgcagagcagggatcttggaag
attcttatctgaactctgtgggtgtgtgaacttcaagttcaagacttttg
agaacagattgaggcacagtcctgttatttctctccagtgggaacagaaa
tacccatggagaaagtttctcatacactctttgccaagatatcatactcc
aaactcccacagtgctcccttctgtgaggaattctaatttgcttcaaaaa
taaatacattacttacatggaagaaaaccccatccatccctccattcgac
aaatgacattgagagaagaatgaaatgatgagcaagatatggtagcttag
atgataaaattgctctacttttctttttacagaagtaaatagcgtctgac
tacatgtttctttttgcttctttttctaaaaagaaattctctgttgaatg
caagcgttggttcaattatttgtattgcagctactatatttctaggatac
ccagagtctctaaacacattcaaacacacacacacacacacacacacaca
cacacacacactcactcacacacacacatacacacacacaggtacgtgag
tacccacaccccatcattgtcatgacatatctgtgcatagtcaggaacag
tgtattactctcttcgtaattaccccaccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_81182473_81183563
seq2: B6Ng01-319B13.g_72_1151 (reverse)

seq1  GGGTGGGGTAAATCTACGAAAGAGAGTAATACACTGTTCCCTGACTTTAT  50
      |||||||||||   |||| ||||||||||||||||||| ||||||  |||
seq2  GGGTGGGGTAA--TTACG-AAGAGAGTAATACACTGTT-CCTGAC--TAT  44

seq1  GCACAGATATGTTTCATGACATATGATGGGGTGTTGGGTACTCACGTTCC  100
      |||||||||||  |||||||| ||||||||||| |||||||||||| | |
seq2  GCACAGATATG--TCATGACA-ATGATGGGGTG-TGGGTACTCACG-TAC  89

seq1  CTGTGTGTGTGTATGTGTGTGTGT--GTGTGTGTGTGTGTGTGTGTGTGT  148
      ||||||||||||||||||||||||  ||| ||||||||||||||||||||
seq2  CTGTGTGTGTGTATGTGTGTGTGTGAGTGAGTGTGTGTGTGTGTGTGTGT  139

seq1  GTGTGTGTGTGTGTGTGTTTGAATGTGTTTAGAGACTCTTGGGTATCCTA  198
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GTGTGTGTGTGTGTGTGTTTGAATGTGTTTAGAGACTC-TGGGTATCCTA  188

seq1  GAAATATAGTAGCTGCAATACAAATAATTGAACCAACGCTTGCATTCAAC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATAGTAGCTGCAATACAAATAATTGAACCAACGCTTGCATTCAAC  238

seq1  AGAGAATTTCTTTTTTAGAAAAAGAAGCAAAAAGAAACATGTAGTCAGAC  298
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATTTC-TTTTTAGAAAAAGAAGCAAAAAGAAACATGTAGTCAGAC  287

seq1  GCTATTTACTTCTGTAAAAAGAAAAGTAGAGCAATTTTATCATCTAAGCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTACTTCTGTAAAAAGAAAAGTAGAGCAATTTTATCATCTAAGCT  337

seq1  ACCATATCTTGCTCATCATTTCATTCTTCTCTCAATGTCATTTGTCGAAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATATCTTGCTCATCATTTCATTCTTCTCTCAATGTCATTTGTCGAAT  387

seq1  GGAGGGATGGATGGGGTTTTCTTCCATGTAAGTAATGTATTTATTTTTGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGATGGATGGGGTTTTCTTCCATGTAAGTAATGTATTTATTTTTGA  437

seq1  AGCAAATTAGAATTCCTCACAGAAGGGAGCACTGTGGGAGTTTGGAGTAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATTAGAATTCCTCACAGAAGGGAGCACTGTGGGAGTTTGGAGTAT  487

seq1  GATATCTTGGCAAAGAGTGTATGAGAAACTTTCTCCATGGGTATTTCTGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCTTGGCAAAGAGTGTATGAGAAACTTTCTCCATGGGTATTTCTGT  537

seq1  TCCCACTGGAGAGAAATAACAGGACTGTGCCTCAATCTGTTCTCAAAAGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACTGGAGAGAAATAACAGGACTGTGCCTCAATCTGTTCTCAAAAGT  587

seq1  CTTGAACTTGAAGTTCACACACCCACAGAGTTCAGATAAGAATCTTCCAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACTTGAAGTTCACACACCCACAGAGTTCAGATAAGAATCTTCCAA  637

seq1  GATCCCTGCTCTGCGGATGCTTCTTACTTCCCCAGGGGGAAATTTCCACC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCTGCTCTGCGGATGCTTCTTACTTCCCCAGGGGGAAATTTCCACC  687

seq1  TTTCGATGGAGCTCCCTCTCAATCTGTCTACTAATGCAGAACAGAAAAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGATGGAGCTCCCTCTCAATCTGTCTACTAATGCAGAACAGAAAAAA  737

seq1  AGTGTTGAAACAAAAGTCACAGCAAATACAACCTTCTCTGTCCATTTTCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTGAAACAAAAGTCACAGCAAATACAACCTTCTCTGTCCATTTTCA  787

seq1  AAACCAAGTAAGGTAAAACAAGATAATGTCCCTCAGACATGGAATGTCTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAGTAAGGTAAAACAAGATAATGTCCCTCAGACATGGAATGTCTC  837

seq1  CCAAAGACTTCAGAGTTCCCAGAATGCAGAGTACTGTTAGGATCTGCTGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGACTTCAGAGTTCCCAGAATGCAGAGTACTGTTAGGATCTGCTGA  887

seq1  AATCCATAGTATGTGGGGTCTGGGTGGGGGGGGGGGAAGGTCTTCAAGTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCATAGTATGTGGGGTCTGGGTGGGGGGGGGGGAAGGTCTTCAAGTT  937

seq1  ACTAGAACAACTCTAGGAAGATTATATGACCTTCATCAATCCTTCTTGGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAACAACTCTAGGAAGATTATATGACCTTCATCAATCCTTCTTGGT  987

seq1  CTTTAGCTTCCTGGCCATGAGATCAGTGCACATTTTACTACACACTCCTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGCTTCCTGGCCATGAGATCAGTGCACATTTTACTACACACTCCTG  1037

seq1  ACATTGTGGCCTTGCCTGCCATGCCCCAGACAACTGGGAATTC  1091
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTGGCCTTGCCTGCCATGCCCCAGACAACTGGGAATTC  1080