BAC Information

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BAC

Clone NameB6Ng01-319F02
Chromosome3 (Build37)9 (Build37)
Map Location 71,665,874 - 71,666,416118,057,347 - 118,058,446
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG667377, LOC667385
Downstream geneLOC100041459
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319F02.bB6Ng01-319F02.g
ACCGA108977GA108978
length1,1551,104
definitionB6Ng01-319F02.b B6Ng01-319F02.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(71,665,874 - 71,666,416)(118,057,347 - 118,058,446)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtctttttccttgcagaaactttggagtttca
ttaggtcccatttgtcgattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctggatcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattccgccagaagttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagaca
aatttgcaaattgctccttccaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagatttgaagtttttatcata
cagatctttcacctccttagttagagtcacgccaagatattttatattat
tgtgactattgagaaggtgttgttcctaatttcttctcagcctgtttatt
ctttgtatagagaacgccatgactgtttgagtttatttttatatcagcta
cttcacccgagcctgtttatcaagttaggagttctctgttagaattttaa
ggttcacaaaatatactatcatatcatctgccaaaaggaaatttggactt
cctct

gaattcagaaatccgcctgcctctgcctcccaagtgctgggattaaaggc
gtgcacctccactgtccggcgagtctagtctttatggctaggaaaactca
aggtattggtaggttagagactttcagacctttgaaggttctgaattgaa
agatcacacgtggccctcaaataggatggaaactaggtatagcattcaaa
taactggtcactttattatcaagctaagtgtattcaattgttccagaata
gcatttgcatggttggttcttttaactccattttcacggagtaggaagca
ggctcagaaaggttaagccactgcttgtagtcaccacccctagctcgttc
ctagatgcacgtccatcagatgtgaattcaaatgtcccttcctcatagaa
cttagcactgtctaaagcaaacgtctgttcatctgctgcagcaccctgca
tactctccacctaatgtaataggccagagtctacaagtgcctgtctatat
catgtctgagcacagataatggtagactcggggacttctataatttcaag
catgaagcagttgtagaacaccgctccatcctaccagtttgaggcaaaat
atttggactggactctgaagcagcagtagacccaggtttgaagcagcaac
atgagcagcgattatgtggtaaagcatactgagtcttccttggtttgagg
gctttgattggaaggaggaggcagtaatgaggaatggggtaagggaagtt
caggtaaagtgcatatgattttggtattgtatgaccttgaagataatctc
atgcaagatagggatggggcactcaaggttaaagcagtggttttcatcct
tcctaatgccgagaccctgtaacagtttcttcatgttgtggtgacccctc
caaaccacagaatcaatttcatttgctacttcataactgcaatttcacta
ctgttaagaaaacataatatacatttcttgagatagaagcttgccaaaag
ggatgtgacccccacagtgggagccactgggttaaagcctgcatggatct
tatttagacagaatgaaaaaatgctagaaaacaaccattcatattgctct
cagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_71665874_71666416
seq2: B6Ng01-319F02.b_675_1207 (reverse)

seq1  AGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAA  50
      |||||||||| |||| || ||||| ||||||||||||||||||||| |  
seq2  AGAGGAAGTCCAAATTTC-CTTTTGGCAGATGATATGATAGTATAT-TTT  48

seq1  GTGACCCTAAAAATTCCAACAGAGAACTCCTAAACCTGATAAACA-GCTT  99
      |||| ||| ||||||| |||||||||||||| ||| ||||||||| ||| 
seq2  GTGAACCTTAAAATTCTAACAGAGAACTCCT-AACTTGATAAACAGGCTC  97

seq1  CGGTGAAGTAGCTGGATAT-AAAATAAACTCAAACAAGTCAATGGCCTTT  148
       |||||||||||| ||||| ||||||||||||||| |||| |||| | ||
seq2  GGGTGAAGTAGCT-GATATAAAAATAAACTCAAAC-AGTC-ATGG-CGTT  143

seq1  CTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACC  198
      ||||||||||||||||||||||||||| |||||||||||  ||||||| |
seq2  CTCTATACAAAGAATAAACAGGCTGAG-AAGAAATTAGG--AACAACA-C  189

seq1  CTTCTCAATAGTCACAAATAATATAAAATATCTTGGCGTGACTCTAACTA  248
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTTCTCAATAGTCAC-AATAATATAAAATATCTTGGCGTGACTCTAACTA  238

seq1  AGGAGGTGAAAGATCTGTATGATAAAAACTTCAAATCTCTGAAGAAAGAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTGAAAGATCTGTATGATAAAAACTTCAAATCTCTGAAGAAAGAA  288

seq1  ATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTGG  338

seq1  CAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGAT  388

seq1  TCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATTGGAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATTGGAA  438

seq1  GGAGCAATTTGCAAATTTGTCTGGAATAACAAAAAACCTAGGATAGCAAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAATTTGCAAATTTGTCTGGAATAACAAAAAACCTAGGATAGCAAA  488

seq1  AAGTCTTCTCAAGGATAAAAGAACTTCTGGCGGAATCACCATGCC  543
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTCTCAAGGATAAAAGAACTTCTGGCGGAATCACCATGCC  533


seq1: chr9_118057347_118058446
seq2: B6Ng01-319F02.g_69_1172 (reverse)

seq1  GCTGAGAGCAAATATGAAGTGTTTGTTTCTTACATTTTCTCA-TCTGTCT  49
      ||||||||| ||||||||  |||  |||||  |||||| ||| |||||||
seq2  GCTGAGAGC-AATATGAATGGTTGTTTTCTAGCATTTTTTCATTCTGTCT  49

seq1  AATTAAGATCCATGCAGGCCTTTAACCCAGTGGCTCCCAACCTGT-GGGG  98
      || ||||||||||||||| ||||||||||||||||||||  |||| ||||
seq2  AAATAAGATCCATGCAGG-CTTTAACCCAGTGGCTCCCA--CTGTGGGGG  96

seq1  TCACCATCCCTTTTGGCAAGCTTCTATCTCCAAGAAATGTATATTATG-T  147
      ||| ||||||||||||||||||||||||| |||||||||||||||||| |
seq2  TCA-CATCCCTTTTGGCAAGCTTCTATCT-CAAGAAATGTATATTATGTT  144

seq1  TTCCTAACAGTAGTGAAATTGCAGTTATGAAGTAGC-AATGAAA-TGATT  195
      ||| |||||||||||||||||||||||||||||||| ||||||| |||||
seq2  TTCTTAACAGTAGTGAAATTGCAGTTATGAAGTAGCAAATGAAATTGATT  194

seq1  CTGTGGTT--GGGGGGTCACCACAACATG-AGGAACTGTTACAGGGTCTC  242
      ||||||||  | ||||||||||||||||| || |||||||||||||||||
seq2  CTGTGGTTTGGAGGGGTCACCACAACATGAAGAAACTGTTACAGGGTCTC  244

seq1  GGCATTAGGAAGGATGAAAACCACTGCTTTAACC-TGAGTGCCCCATCCC  291
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGCATTAGGAAGGATGAAAACCACTGCTTTAACCTTGAGTGCCCCATCCC  294

seq1  TATC-TGCATGAGATTATCTTCAAGGTCATACAATACCAAAATCATATGC  340
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTGCATGAGATTATCTTCAAGGTCATACAATACCAAAATCATATGC  344

seq1  ACTTTACCTGAACTTCCCTTACCCCATTCCTCATTACTGCCTCCTCCTTC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTACCTGAACTTCCCTTACCCCATTCCTCATTACTGCCTCCTCCTTC  394

seq1  CAATCAAAGCCCTCAAACCAAGGAAGACTCAGTATGCTTTACCACATAAT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAAAGCCCTCAAACCAAGGAAGACTCAGTATGCTTTACCACATAAT  444

seq1  CGCTGCTCATGTTGCTGCTTCAAACCTGGGTCTACTGCTGCTTCAGAGTC  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGCTCATGTTGCTGCTTCAAACCTGGGTCTACTGCTGCTTCAGAGTC  494

seq1  CAGTCCAAATATTTTGCCTCAAACTGGTAGGATGGAGCGGTGTTCTACAA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCAAATATTTTGCCTCAAACTGGTAGGATGGAGCGGTGTTCTACAA  544

seq1  CTGCTTCATGCTTGAAATTATAGAAGTCCCCGAGTCTACCATTATCTGTG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCATGCTTGAAATTATAGAAGTCCCCGAGTCTACCATTATCTGTG  594

seq1  CTCAGACATGATATAGACAGGCACTTGTAGACTCTGGCCTATTACATTAG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGACATGATATAGACAGGCACTTGTAGACTCTGGCCTATTACATTAG  644

seq1  GTGGAGAGTATGCAGGGTGCTGCAGCAGATGAACAGACGTTTGCTTTAGA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGAGTATGCAGGGTGCTGCAGCAGATGAACAGACGTTTGCTTTAGA  694

seq1  CAGTGCTAAGTTCTATGAGGAAGGGACATTTGAATTCACATCTGATGGAC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTAAGTTCTATGAGGAAGGGACATTTGAATTCACATCTGATGGAC  744

seq1  GTGCATCTAGGAACGAGCTAGGGGTGGTGACTACAAGCAGTGGCTTAACC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATCTAGGAACGAGCTAGGGGTGGTGACTACAAGCAGTGGCTTAACC  794

seq1  TTTCTGAGCCTGCTTCCTACTCCGTGAAAATGGAGTTAAAAGAACCAACC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAGCCTGCTTCCTACTCCGTGAAAATGGAGTTAAAAGAACCAACC  844

seq1  ATGCAAATGCTATTCTGGAACAATTGAATACACTTAGCTTGATAATAAAG  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAATGCTATTCTGGAACAATTGAATACACTTAGCTTGATAATAAAG  894

seq1  TGACCAGTTATTTGAATGCTATACCTAGTTTCCATCCTATTTGAGGGCCA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAGTTATTTGAATGCTATACCTAGTTTCCATCCTATTTGAGGGCCA  944

seq1  CGTGTGATCTTTCAATTCAGAACCTTCAAAGGTCTGAAAGTCTCTAACCT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGATCTTTCAATTCAGAACCTTCAAAGGTCTGAAAGTCTCTAACCT  994

seq1  ACCAATACCTTGAGTTTTCCTAGCCATAAAGACTAGACTCGCCGGACAGT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATACCTTGAGTTTTCCTAGCCATAAAGACTAGACTCGCCGGACAGT  1044

seq1  GGAGGTGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGAT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGAT  1094

seq1  TTCTGAATTC  1100
      ||||||||||
seq2  TTCTGAATTC  1104


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