BAC Information

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BAC

Clone NameB6Ng01-319M19
Chromosome3 (Build37)
Map Location 26,644,358 - 26,771,582
singlet/doubletdoublet
Overlap geneSpata16
Upstream geneNlgn1, LOC229152
Downstream geneLOC665258, Ect2, Aadacl1, LOC100040527, Tnfsf10, Ghsr, Fndc3b, E030011K20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319M19.bB6Ng01-319M19.g
ACCGA109341GA109342
length1,0981,084
definitionB6Ng01-319M19.b B6Ng01-319M19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,770,483 - 26,771,582)(26,644,358 - 26,645,446)
sequence
gaattcagtcaaatgcttttcctgcatttattgaagtttacttcttcatc
gtgtttttatttatcaactgcttaaaaatatccttgttacttatttaatg
tgcgaaagagacacacacagagagaaacaagacttggaagcatacagagg
cagagacattgcattgtgtatggaggtcagagggcagttggaagtcagga
cttagtatttagttatttttactgtacaggttccggggattgagcaccgg
tcttcagattaggcatcaggtaacatcctgctagggctcccagtgagcaa
ctttaaaattagtgattacttaatatgaaaatctcacaaatgtgcatagt
agtacttgcttatttcactccagtactatatttgcctgccttcctctagc
tgatctcctacttatccctaaccagctccctctgcttctctcgctctctc
cctccctcccatctgtcttacgatatattattgttacaactagattgcac
atatgaacaaggacatgatgtttcctcctctcccatcaccctttcttatt
cctcatctccctccttttagaccccttcctcctcccatggatttcctcat
tcttctttcaagtcacatatgtattcaaatatatattgcacatattaggg
aaacatgcagtgcttgcctttctgagtcggacttattttgcttaacacaa
ttctatctattttcctgaaaatgaaataattttgtttttcttacagttga
atgaaatgtattttatctatatagctagatattggcatttaggataactt
ctgtgctagcatctttgggttatgttaatctaggttccttcagatttatt
ctcaggaacagtaacactctacttttcttcttctttttcttttttctttc
tgtttaagtactttatgacaaagtactttatgacatctaaaatagatttt
ttctcatcaaaatagcttaaatggttttatatttttctgcttctagactt
gcatgtatattagatttaatattatctactccataaacagactccaaagg
aacacctcttatctgttcttatattactagcagtttataaacatgcat

gaattccaagcccagggtcagctcaaggactacctagggcattggtgaaa
gccaggaagcaaagttcaaatttgcttaggtatttggcaagtcattgctt
ggagtcacctacaataaaacaacactgaaagaaagcacacagatccattt
gcaaggacaagtttggagcattcgttatatggaatgccacagttccagga
gactaagttaccataaactcttctccttggggctgtgtccaggtttctag
gcctgtcatgtgagtcactactagagtgggtgtagcaggctggtatgtac
tggaatttttctctggaattttaaaacccaagttcagctattacttcact
aattcctacttccctggtataaactaattaattaatttatactgaagttt
tagaaaacctatttttcagttctgctgcaacacaactataaaatagcgct
agatattccattctaagatcctctttcactacattccttccctgtcttac
ccctggagccctactcctcctctggggtcatcacatgaataagtgggaca
gccaggcaatgtaggcatgtagctatattatataaaaggtaggggttagg
gggaaactattattctgctatgtagacatgtttgtagaacacacctctaa
acatttataggcctacttagagattaatgcttcagtcacctttggtcaga
gaagctttgttggacagtgggcagcagttaacgtaaagattcataactgg
tcaaagtgccaagaataagtgatttctccatgtttagccacaaacaggac
atatgtattacctcttttaatgttcaggggacattatgggaaatgaaaga
gaaaaaaaatatatgacccagaggatgggaaaggagtgctgaaatgtcat
ttctgaatatgatatgggccattgcacttgtggcctagagcagctggggt
acaatgtttgccctgtcaactgtccagcatagatgacagagacctcacga
gtctgcctctccatgaagggctgaatgagatagtttaataaaaatgtctt
ccatggatcagctccagcacactggttcctcagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_26770483_26771582
seq2: B6Ng01-319M19.b_48_1145 (reverse)

seq1  ATGCATGTTTATAAATTGCTAGT-ATATAAGGAACAGATAAGA-GTGTTC  48
      ||||||||||||||| ||||||| |||||| |||||||||||| ||||||
seq2  ATGCATGTTTATAAACTGCTAGTAATATAA-GAACAGATAAGAGGTGTTC  49

seq1  CTCTGGAGTCTG-TTAT-GAGTAAGATTAATAATTAAATCTAATATACAT  96
      || ||||||||| |||| |||| ||| |||| ||||||||||||||||||
seq2  CTTTGGAGTCTGTTTATGGAGT-AGA-TAAT-ATTAAATCTAATATACAT  96

seq1  GCAAGTCTAGAAGCAG-AAAATATAAAACCATTTAAGCTATTTTGATGAG  145
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GCAAGTCTAGAAGCAGAAAAATATAAAACCATTTAAGCTATTTTGATGAG  146

seq1  -AAAAATCTATTTTTAGATGTCATAAAGTACTTTGTCATAAAGTACTTTA  194
       ||||||||| |||||||||||||||||||||||||||||||||||||  
seq2  AAAAAATCTA-TTTTAGATGTCATAAAGTACTTTGTCATAAAGTACTT--  193

seq1  AAACAGAAAGAAAAAAGAAAAAGAAAGAAGAAAAGTAGAGTGTTACTGTT  244
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAACAGAAAGAAAAAAGAAAAAG-AAGAAGAAAAGTAGAGTGTTACTGTT  242

seq1  CCTGAGAATAAATCTGAAGGAACCTAGATTAACATAACCCAAAGATGCTA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGAATAAATCTGAAGGAACCTAGATTAACATAACCCAAAGATGCTA  292

seq1  GCACAGAAGTTATCCTAAATGCCAATATCTAGCTATATAGATAAAATACA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGAAGTTATCCTAAATGCCAATATCTAGCTATATAGATAAAATACA  342

seq1  TTTCATTCAACTGTAAGAAAAACAAAATTATTTCATTTTCAGGAAAATAG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTCAACTGTAAGAAAAACAAAATTATTTCATTTTCAGGAAAATAG  392

seq1  ATAGAATTGTGTTAAGCAAAATAAGTCCGACTCAGAAAGGCAAGCACTGC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAATTGTGTTAAGCAAAATAAGTCCGACTCAGAAAGGCAAGCACTGC  442

seq1  ATGTTTCCCTAATATGTGCAATATATATTTGAATACATATGTGACTTGAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCCCTAATATGTGCAATATATATTTGAATACATATGTGACTTGAA  492

seq1  AGAAGAATGAGGAAATCCATGGGAGGAGGAAGGGGTCTAAAAGGAGGGAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAATGAGGAAATCCATGGGAGGAGGAAGGGGTCTAAAAGGAGGGAG  542

seq1  ATGAGGAATAAGAAAGGGTGATGGGAGAGGAGGAAACATCATGTCCTTGT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGAATAAGAAAGGGTGATGGGAGAGGAGGAAACATCATGTCCTTGT  592

seq1  TCATATGTGCAATCTAGTTGTAACAATAATATATCGTAAGACAGATGGGA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATGTGCAATCTAGTTGTAACAATAATATATCGTAAGACAGATGGGA  642

seq1  GGGAGGGAGAGAGCGAGAGAAGCAGAGGGAGCTGGTTAGGGATAAGTAGG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGAGAGAGCGAGAGAAGCAGAGGGAGCTGGTTAGGGATAAGTAGG  692

seq1  AGATCAGCTAGAGGAAGGCAGGCAAATATAGTACTGGAGTGAAATAAGCA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAGCTAGAGGAAGGCAGGCAAATATAGTACTGGAGTGAAATAAGCA  742

seq1  AGTACTACTATGCACATTTGTGAGATTTTCATATTAAGTAATCACTAATT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTACTATGCACATTTGTGAGATTTTCATATTAAGTAATCACTAATT  792

seq1  TTAAAGTTGCTCACTGGGAGCCCTAGCAGGATGTTACCTGATGCCTAATC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTTGCTCACTGGGAGCCCTAGCAGGATGTTACCTGATGCCTAATC  842

seq1  TGAAGACCGGTGCTCAATCCCCGGAACCTGTACAGTAAAAATAACTAAAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACCGGTGCTCAATCCCCGGAACCTGTACAGTAAAAATAACTAAAT  892

seq1  ACTAAGTCCTGACTTCCAACTGCCCTCTGACCTCCATACACAATGCAATG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGTCCTGACTTCCAACTGCCCTCTGACCTCCATACACAATGCAATG  942

seq1  TCTCTGCCTCTGTATGCTTCCAAGTCTTGTTTCTCTCTGTGTGTGTCTCT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCCTCTGTATGCTTCCAAGTCTTGTTTCTCTCTGTGTGTGTCTCT  992

seq1  TTCGCACATTAAATAAGTAACAAGGATATTTTTAAGCAGTTGATAAATAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCACATTAAATAAGTAACAAGGATATTTTTAAGCAGTTGATAAATAA  1042

seq1  AAACACGATGAAGAAGTAAACTTCAATAAATGCAGGAAAAGCATTTGACT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACGATGAAGAAGTAAACTTCAATAAATGCAGGAAAAGCATTTGACT  1092

seq1  GAATTC  1100
      ||||||
seq2  GAATTC  1098


seq1: chr3_26644358_26645446
seq2: B6Ng01-319M19.g_69_1152

seq1  GAATTCCAAGCCCAGGGTCAGCTCAAGGACTACCTAGGGCATTGGTGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGCCCAGGGTCAGCTCAAGGACTACCTAGGGCATTGGTGAAA  50

seq1  GCCAGGAAGCAAAGTTCAAATTTGCTTAGGTATTTGGCAAGTCATTGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGAAGCAAAGTTCAAATTTGCTTAGGTATTTGGCAAGTCATTGCTT  100

seq1  GGAGTCACCTACAATAAAACAACACTGAAAGAAAGCACACAGATCCATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCACCTACAATAAAACAACACTGAAAGAAAGCACACAGATCCATTT  150

seq1  GCAAGGACAAGTTTGGAGCATTCGTTATATGGAATGCCACAGTTCCAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGACAAGTTTGGAGCATTCGTTATATGGAATGCCACAGTTCCAGGA  200

seq1  GACTAAGTTACCATAAACTCTTCTCCTTGGGGCTGTGTCCAGGTTTCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAGTTACCATAAACTCTTCTCCTTGGGGCTGTGTCCAGGTTTCTAG  250

seq1  GCCTGTCATGTGAGTCACTACTAGAGTGGGTGTAGCAGGCTGGTATGTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTCATGTGAGTCACTACTAGAGTGGGTGTAGCAGGCTGGTATGTAC  300

seq1  TGGAATTTTTCTCTGGAATTTTAAAACCCAAGTTCAGCTATTACTTCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTTTTCTCTGGAATTTTAAAACCCAAGTTCAGCTATTACTTCACT  350

seq1  AATTCCTACTTCCCTGGTATAAACTAATTAATTAATTTATACTGAAGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTACTTCCCTGGTATAAACTAATTAATTAATTTATACTGAAGTTT  400

seq1  TAGAAAACCTATTTTTCAGTTCTGCTGCAACACAACTATAAAATAGCGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAACCTATTTTTCAGTTCTGCTGCAACACAACTATAAAATAGCGCT  450

seq1  AGATATTCCATTCTAAGATCCTCTTTCACTACATTCCTTCCCTGTCTTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTCCATTCTAAGATCCTCTTTCACTACATTCCTTCCCTGTCTTAC  500

seq1  CCCTGGAGCCCTACTCCTCCTCTGGGGTCATCACATGAATAAGTGGGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGAGCCCTACTCCTCCTCTGGGGTCATCACATGAATAAGTGGGACA  550

seq1  GCCAGGCAATGTAGGCATGTAGCTATATTATATAAAAGGTAGGGGTTAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGCAATGTAGGCATGTAGCTATATTATATAAAAGGTAGGGGTTAGG  600

seq1  GGGAAACTATTATTCTGCTATGTAGACATGTTTGTAGAACACACCTCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAACTATTATTCTGCTATGTAGACATGTTTGTAGAACACACCTCTAA  650

seq1  ACATTTATAGGCCTACTTAGAGATTAATGCTTCAGTCACCTTTGGTCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTATAGGCCTACTTAGAGATTAATGCTTCAGTCACCTTTGGTCAGA  700

seq1  GAAGCTTTGTTGGACAGTGGGCAGCAGTTAACGTAAAGATTCATAACTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTTTGTTGGACAGTGGGCAGCAGTTAACGTAAAGATTCATAACTGG  750

seq1  TCAAAGTGCCAAGAATAAGTGATTTCTCCATGTTTAGCCACAAACAGGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTGCCAAGAATAAGTGATTTCTCCATGTTTAGCCACAAACAGGAC  800

seq1  ATATGTATTACCTCTTTTAATGTTCAGGGGACATTATGGGAAATGAAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTATTACCTCTTTTAATGTTCAGGGGACATTATGGGAAATGAAAGA  850

seq1  GAAAAAAAATATATGACCCAGAGGATGGG-AAGGAGTGCTGAAATGTCAT  899
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GAAAAAAAATATATGACCCAGAGGATGGGAAAGGAGTGCTGAAATGTCAT  900

seq1  TTCTGAATATGATAT-GGCCATTGCACTTGTGGGCCTAGAGCAGCTGGGG  948
      ||||||||||||||| ||||||||||||||| ||||||||||||||||||
seq2  TTCTGAATATGATATGGGCCATTGCACTTGT-GGCCTAGAGCAGCTGGGG  949

seq1  TACAATGTTTGCCCTGTCAACTGTCCAGCATAGATGACAGAGGACCTCAC  998
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TACAATGTTTGCCCTGTCAACTGTCCAGCATAGATGACAGA-GACCTCAC  998

seq1  GAGGTCCTGCCTCTCCATGAGGGGCTGAATGAGATAGTTTAAATAAAAAA  1048
      |||   |||||||||||||| |||||||||||||||||||||   |||||
seq2  GAG--TCTGCCTCTCCATGAAGGGCTGAATGAGATAGTTTAA--TAAAAA  1044

seq1  TGTC-TCCATGGGATCAAGCTCCAGCACACTTGGTCCTCAAG  1089
      |||| ||||| ||||| |||||||||||||| | |||||| |
seq2  TGTCTTCCAT-GGATC-AGCTCCAGCACACTGGTTCCTCAGG  1084


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