BAC Information

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BAC

Clone NameB6Ng01-320E03
Chromosome3 (Build37)
Map Location 144,814,940 - 144,980,401
singlet/doubletdoublet
Overlap geneOdf2l, Col24a1
Upstream geneLmo4, LOC545572, Hs2st1, Sep15, LOC435761, Sh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448, Clca6, Clca3, Clca5
Downstream gene2410019A14Rik, Cyr61, Ddah1, LOC100040331, Bcl10, 2410004B18Rik, Syde2, Wdr63, Mcoln3, Mcoln2, Edg7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320E03.bB6Ng01-320E03.g
ACCGA109673GA109674
length4721,096
definitionB6Ng01-320E03.b B6Ng01-320E03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,979,923 - 144,980,401)(144,814,940 - 144,816,043)
sequence
atgctcccaaatattattttcaccccacacatttagctcatgaaattatg
tctttcagaagcttatggtttattttaatgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgcgtgtgtgtgtgtgtgtgcatgtgtgcgtgtgtgtgtgtg
cctgctttcatgagtgcagtgccttcagtggccacaggtttcagataccc
ctggagcatggtttatagggtggatgtgagctgtccaaggtgggtctggt
aacacaccttacgataatggcaatactcactcttaccactgacccacctg
tcctgcacctaacacgatgcactgtgcctcagcacaagatacagttacac
atgtacattcaattacttatcgaaacgtaggttcctttggaatagacact
gtttttctgccttagctaaacattgtcaaacgaaatgatttttgaccaca
ttattactccacaaatccagat
gaattctgagcctaatttagagatagctagaaataaacgaatgtcttggg
tgccatccaggcacagacagttcagtgagtaattagcatccgcgtgcaca
tacattagccagaccgagttgtgagtgctcagacagcctgaacctaaccc
tggccacatgactatcttcacagtacatggtgtaccctgcaggctgtgag
gtgggggggatgcacactttgaagggtgacctcacagcttcacaatcgtg
gcaaccctactgaagtcacagtgtctttcagaccttactgtcccgaagct
catttgcgtttacattctgccctgcagtgagtaattgtgtagctactgtt
ctctccaaacggatgcgccataaagcccagctccattcagtctaatatgt
gagcagtccagtctagggctttgccacgcaattccctgcatctcctgctg
ggcactgctcagttttgggtgctggtgtctataatacctgctatgagaaa
cacaaaaggagttcttggagtgtgtgggttttagctggaaaccagtctta
cctaaaacatttgcagtaagcagcctacctagaaatctgtatacaaccaa
aggtcaaaatttgtatgagtttactaaatcttctccctcaatggacatga
attaagttctttttagtttttaaaatagtttaggagaaaatgttcatgtt
atcaaagttgaaattctagccgggcgtggtggtgcacgccttaatcccag
cactcggaaggcggaggcactcggatttctgagttcaaggccagcctggt
ctacaaagtgagttccaggacagccagggctacacagggaaaccctgtct
cgaaaaacaaaacaaaacaaaacaaacaaaacaaacaatcaaacaaagag
ctgaaattgctgaaattctgtcagttcttaaaacactttcctttcaaaac
gtgtattctaatggtacagattattaaactttgggtctagttaattttgg
tgtttgctgtttttatttgcaagttttttttaatagtagttgtttataaa
aataagtttagacagtgacgtctttattggataaacatgatatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_144979923_144980401
seq2: B6Ng01-320E03.b_42_519 (reverse)

seq1  ATCTGGATTTGTAGAGTAATAATGTGCTCAGAAAACATTTCCTTTGACAC  50
      |||||||||||| ||||||||||||| ||| ||| |||||| ||||||| 
seq2  ATCTGGATTTGTGGAGTAATAATGTGGTCAAAAATCATTTCGTTTGACAA  50

seq1  TGCTTAGCTTGAGGCAGAAGAACAGTGTCTATTCCAAAGGAACCTACGTT  100
      || ||||| | |||||||| ||||||||||||||||||||||||||||||
seq2  TGTTTAGC-TAAGGCAGAAAAACAGTGTCTATTCCAAAGGAACCTACGTT  99

seq1  TCGATAAGAAATTGAATGTACATGTGTAACTGTATCTTGTGCTGAGGCAC  150
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TCGATAAGTAATTGAATGTACATGTGTAACTGTATCTTGTGCTGAGGCAC  149

seq1  AGTGCATCCTGTTAGGTGCTGGACAGGTGGCTCAGTGGTAAGAGTGAGTA  200
      |||||||| |||||||||| |||||||||| |||||||||||||||||||
seq2  AGTGCATCGTGTTAGGTGCAGGACAGGTGGGTCAGTGGTAAGAGTGAGTA  199

seq1  CTGCCATTATCCTCAGGTCTGTTACCAGACCCACCTTGGACAGCTCACAA  250
       |||||||||| | |||| |||||||||||||||||||||||||||||| 
seq2  TTGCCATTATCGTAAGGTGTGTTACCAGACCCACCTTGGACAGCTCACAT  249

seq1  CCACCCTATAAACCATGCTCCAGGGGTATCTGAAACCTCTGGCCACTGAA  300
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CCACCCTATAAACCATGCTCCAGGGGTATCTGAAACCTGTGGCCACTGAA  299

seq1  GGCACTGCACTCATGAAAGCAGGCACACACACACACGCACACATGCACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTGCACTCATGAAAGCAGGCACACACACACACGCACACATGCACAC  349

seq1  ACACACACACACGCACACACACACACACACACACACACACACACATTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACGCACACACACACACACACACACACACACACACATTAAA  399

seq1  ATAAACCATAAGCTTCTGAAAGACATAATTTCATGAGCTAAATGTGTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACCATAAGCTTCTGAAAGACATAATTTCATGAGCTAAATGTGTGGG  449

seq1  GTGAAAATAATATTTGGGAGCATGAATTC  479
      |||||||||||||||||||||||||||||
seq2  GTGAAAATAATATTTGGGAGCATGAATTC  478

seq1: chr3_144814940_144816043
seq2: B6Ng01-320E03.g_69_1164

seq1  GAATTCTGAGCCTAATTTAGAGATAGCTAGAAATAAACGAATGTCTTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGCCTAATTTAGAGATAGCTAGAAATAAACGAATGTCTTGGG  50

seq1  TGCCATCCAGGCACAGACAGTTCAGTGAGTAATTAGCATCCGCGTGCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATCCAGGCACAGACAGTTCAGTGAGTAATTAGCATCCGCGTGCACA  100

seq1  TACATTAGCCAGACCGAGTTGTGAGTGCTCAGACAGCCTGAACCTAACCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTAGCCAGACCGAGTTGTGAGTGCTCAGACAGCCTGAACCTAACCC  150

seq1  TGGCCACATGACTATCTTCACAGTACATGGTGTACCCTGCAGGCTGTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCACATGACTATCTTCACAGTACATGGTGTACCCTGCAGGCTGTGAG  200

seq1  GTGGGGGGGATGCACACTTTGAAGGGTGACCTCACAGCTTCACAATCGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGGGGATGCACACTTTGAAGGGTGACCTCACAGCTTCACAATCGTG  250

seq1  GCAACCCTACTGAAGTCACAGTGTCTTTCAGACCTTACTGTCCCGAAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCCTACTGAAGTCACAGTGTCTTTCAGACCTTACTGTCCCGAAGCT  300

seq1  CATTTGCGTTTACATTCTGCCCTGCAGTGAGTAATTGTGTAGCTACTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCGTTTACATTCTGCCCTGCAGTGAGTAATTGTGTAGCTACTGTT  350

seq1  CTCTCCAAACGGATGCGCCATAAAGCCCAGCTCCATTCAGTCTAATATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAAACGGATGCGCCATAAAGCCCAGCTCCATTCAGTCTAATATGT  400

seq1  GAGCAGTCCAGTCTAGGGCTTTGCCACGCAATTCCCTGCATCTCCTGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGTCCAGTCTAGGGCTTTGCCACGCAATTCCCTGCATCTCCTGCTG  450

seq1  GGCACTGCTCAGTTTTGGGTGCTGGTGTCTATAATACCTGCTATGAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTGCTCAGTTTTGGGTGCTGGTGTCTATAATACCTGCTATGAGAAA  500

seq1  CACAAAAGGAGTTCTTGGAGTGTGTGGGTTTTAGCTGGAAACCAGTCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAGGAGTTCTTGGAGTGTGTGGGTTTTAGCTGGAAACCAGTCTTA  550

seq1  CCTAAAACATTTGCAGTAAGCAGCCTACCTAGAAATCTGTATACAACCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAACATTTGCAGTAAGCAGCCTACCTAGAAATCTGTATACAACCAA  600

seq1  AGGTCAAAATTTGTATGAGTTTACTAAATCTTCTCCCTCAATGGACATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAAAATTTGTATGAGTTTACTAAATCTTCTCCCTCAATGGACATGA  650

seq1  ATTAAGTTCTTTTTAGTTTTTAAAATAGTTTAGGAGAAAATGTTCATGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTTCTTTTTAGTTTTTAAAATAGTTTAGGAGAAAATGTTCATGTT  700

seq1  ATCAAAGTTGAAATTCTAGCCGGGCGTGGTGGTGCACGCCTTAATCCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGTTGAAATTCTAGCCGGGCGTGGTGGTGCACGCCTTAATCCCAG  750

seq1  CACTCGGAAGGCGGAGGCACTCGGATTTCTGAGTTCAAGGCCAGCCTGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCGGAAGGCGGAGGCACTCGGATTTCTGAGTTCAAGGCCAGCCTGGT  800

seq1  CTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGGGAAACCCTGTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGGGAAACCCTGTCT  850

seq1  CGAAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAA  900
      ||||||||||||||||||||||| ||||||||||||   || ||||   |
seq2  CGAAAAACAAAACAAAACAAAAC-AAACAAAACAAA--CAATCAAA--CA  895

seq1  AAGAGCTGAAATTGCTGAAATTCTGTCAGTTCTTAAAACACTTTCCTTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTGAAATTGCTGAAATTCTGTCAGTTCTTAAAACACTTTCCTTTC  945

seq1  AAAACGTGTATTCTAATGGTAACAGATTATTAAACTTTGGGTCTAGTTAA  1000
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AAAACGTGTATTCTAATGGT-ACAGATTATTAAACTTTGGGTCTAGTTAA  994

seq1  TTTTGGTGTTTGCTGTTTTTTATTTGCAAGGTTTTTTTTATAGTAG-TGT  1049
      ||||||||||||||| |||||||||||||| ||||||| ||||||| |||
seq2  TTTTGGTGTTTGCTG-TTTTTATTTGCAAGTTTTTTTTAATAGTAGTTGT  1043

seq1  TTATAAAATAAAGTTTAAGACAGTGAAGGTCTTATGGGATAAAACATGAT  1099
      ||||||||  |||||| ||||||||| |   |||| |||| |||||||||
seq2  TTATAAAAATAAGTTT-AGACAGTGACGTCTTTATTGGAT-AAACATGAT  1091

seq1  ATTTT  1104
      |||||
seq2  ATTTT  1096