BAC Information

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BAC

Clone NameB6Ng01-320G18
Chromosome3 (Build37)
Map Location 105,272,578 - 105,431,915
singlet/doubletdoublet
Overlap geneKcnd3
Upstream geneLrig2, Slc16a1, EG624251, 7530404M11Rik, Ppm1j, Rhoc, Mov10, Capza1, St7l, LOC100043572, Wnt2b, Cttnbp2nl, 4930564D02Rik, 1700095B22Rik
Downstream geneDdx20, 6530418L21Rik, Rap1a, EG433637, Adora3, I830077J02Rik, Atp5f1, Wdr77, Ovgp1, 1700027A23Rik, LOC100043591, Bclp2, LOC100043594, LOC670819, LOC100043129, Chia, Chi3l3, Chi3l4, EG624696, BC051070, 2010016I18Rik, Dennd2d, Cept1, Tmem77, LOC100043608
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320G18.bB6Ng01-320G18.g
ACCGA109791GA109792
length1,0721,097
definitionB6Ng01-320G18.b B6Ng01-320G18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,272,578 - 105,273,650)(105,430,819 - 105,431,915)
sequence
gaattcttcttggcctgtgtcttacttgagtgcacagccatttggtacca
tttgcaaataactttactaaaacttctatcttatctttctccttggccta
tggaaattcacttccatactgggtttctgctatcactaaaagggaagatt
gatcctctgagttttatttatttatttatttattattattattattatta
ttattttagtgtcctacagtgataagtaaataacaacacccatcaggaga
aaaaaaattgttcatgggttttgcaatagaaaataaataaatataccctt
atgttggcacgtggataggagatgagattgaaatagtcacagacagacca
aaagccatctctgcctggcggagggctacagttttttgccagtcttttgc
attgtcagaccctgggacaatgtttcaagaacttgagatttcttctcccc
cccccccgccccgggatgaaatatgttagctgaatgtgttggatcaccgg
gacctgcctatcctctgacatggcacccacctctcatttgggtcttgggg
aagcagctaggggaaatgatgctttcataattcagtagacatgcctcaca
gcaaacaagacacaaaccaagttcatattagaagcttcagtgggagagaa
gggaaataaggctccaaccccgtgaggtggatgttcgatcccaccctgca
catgggaaggccatgatgctgggctcaagctcccacattgcagtcacatt
gaggtcttttaattccatttgagttaactgggcctcctaatgagccttgc
cccactaaaagatgtctgtgttcacagagctgtattgcaggcctcagtaa
ggaaagagacatgagtgagacacaagaagaaggggacattggaagtggta
tgttaatgagggcctccatggaggctgtagcatttcagctagaccttgaa
gatcctgatggaaaaatgaaatgcattaatggccatttatttaacagtat
agtgagaattgtcatgcattatacgagggcagtgttttctcaactgtggg
tcgtgactctctggtggggggg
gaattccagtcctgacttcctttagtgatgaacagcagtgtggaagtgta
aactgaataaaccccttccttcccaacttgcttcttggtcatgaggtttt
gtgtaggaatagaaaccctgattaacacaatgccctatttactgaagaaa
ctgcaggcttctgagaatccagtcattttgtgaagaactcacaggggcac
agtggggtggggcttttgggaatgggtcacagtggacttagaggaggagc
cccaggtcacttccagaacctagcaagaatctgaagcaaacattttcgac
tgggggcgggtacccttatcagactccagctgcttagactactgcacagt
ccaatgcactggtaagaagagagaaaaagaaaagcatcctctgcgaatcc
agtatgatgcacatgagcgagacctgagcagaacagagcggacacgaccc
agcagcagaagagctgcgaacagcaggctcttgctaaacacacactgtac
caaggattagcagggagacgagtaattgaggcgcctctgtcatcctcaca
ttttcttatcactcagatgaatcaggttttaacaaatgctcaaagcagag
acttcattaccacagaaaccccaattgctggataaagatctgctttactt
atgagcctgaagtttccgccagagaagtgatgctaatattatggtttgtg
tttcttccaatgtcctcctggtaggagtggagacaagctctacagccagg
acagtgaccagatttctggatggacagacacatttccacagcctttagct
ttgctattcaagacagacacttgtttatctttcttgcctgagtcgtcagg
atgtgtctgtttcggccatatgacggaagccctgagaatgaatatcttta
tcaagctatatcgttatgcctgacaatatttacacccggatagctttgta
actagaacccaaagtacaggcaggagacatctcatcagtttaacactggg
ggagaaaacaagctaattcgctcattgtggtaatgaggcagaaaggttca
atgaggagtgaggcagagcctgaccacatcattgaggtggggttgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_105272578_105273650
seq2: B6Ng01-320G18.b_50_1121

seq1  GAATTCTTCTTGGCCTGTGTCTTACTTGAGTGCACAGCCATTTGGTACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTTGGCCTGTGTCTTACTTGAGTGCACAGCCATTTGGTACCA  50

seq1  TTTGCAAATAACTTTACTAAAACTTCTATCTTATCTTTCTCCTTGGCCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAAATAACTTTACTAAAACTTCTATCTTATCTTTCTCCTTGGCCTA  100

seq1  TGGAAATTCACTTCCATACTGGGTTTCTGCTATCACTAAAAGGGAAGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATTCACTTCCATACTGGGTTTCTGCTATCACTAAAAGGGAAGATT  150

seq1  GATCCTCTGAGTTTTATTTATTTATTTATTTATTATTATTATTATTATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTCTGAGTTTTATTTATTTATTTATTTATTATTATTATTATTATTA  200

seq1  TTATTTTAGTGTCCTACAGTGATAAGTAAATAACAACACCCATCAGGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTAGTGTCCTACAGTGATAAGTAAATAACAACACCCATCAGGAGA  250

seq1  AAAAAAATTGTTCATGGGTTTTGCAATAGAAAATAAATAAATATACCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATTGTTCATGGGTTTTGCAATAGAAAATAAATAAATATACCCTT  300

seq1  ATGTTGGCACGTGGATAGGAGATGAGATTGAAATAGTCACAGACAGACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGGCACGTGGATAGGAGATGAGATTGAAATAGTCACAGACAGACCA  350

seq1  AAAGCCATCTCTGCCTGGCGGAGGGCTACAGTTTTTTGCCAGTCTTTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCATCTCTGCCTGGCGGAGGGCTACAGTTTTTTGCCAGTCTTTTGC  400

seq1  ATTGTCAGACCCTGGGACAATGTTTCAAGAACTTGAGATTTCTTCTCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCAGACCCTGGGACAATGTTTCAAGAACTTGAGATTTCTTCTCCCC  450

seq1  CCCCCCCGCCCCGGGATGAAATATGTTAGCTGAATGTGTTGGATCACCGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCGCCCCGGGATGAAATATGTTAGCTGAATGTGTTGGATCACCGG  500

seq1  GACCTGCCTATCCTCTGACATGGCACCCACCTCTCATTTGGGTCTTGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGCCTATCCTCTGACATGGCACCCACCTCTCATTTGGGTCTTGGGG  550

seq1  AAGCAGCTAGGGGAAATGATGCTTTCATAATTCAGTAGACATGCCTCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCTAGGGGAAATGATGCTTTCATAATTCAGTAGACATGCCTCACA  600

seq1  GCAAACAAGACACAAACCAAGTTCATATTAGAAGCTTCAGTGGGAGAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACAAGACACAAACCAAGTTCATATTAGAAGCTTCAGTGGGAGAGAA  650

seq1  GGGAAATAAGGCTCCAACCCCGTGAGGTGGATGTTCGATCCCACCCTGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATAAGGCTCCAACCCCGTGAGGTGGATGTTCGATCCCACCCTGCA  700

seq1  CATGGGAAGGCCATGATGCTGGGCTCAAGCTCCCACATTGCAGTCACATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGAAGGCCATGATGCTGGGCTCAAGCTCCCACATTGCAGTCACATT  750

seq1  GAGGTCTTTTAATTCCATTTGAGTTAACTGGGCCTCCTAATGAGCCTTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCTTTTAATTCCATTTGAGTTAACTGGGCCTCCTAATGAGCCTTGC  800

seq1  CCCACTAAAAGATGTCTGTGTTCACAGAGCTGTATTGCAGGCCTCAGTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTAAAAGATGTCTGTGTTCACAGAGCTGTATTGCAGGCCTCAGTAA  850

seq1  GGAAAGAGACATGAGTGAGACACAAGAAGAAGGGGACATTGGAAGTGGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAGACATGAGTGAGACACAAGAAGAAGGGGACATTGGAAGTGGTA  900

seq1  TGTTAATGAGGG-CTCCATGGAGGCTGTAGCATTTCAGCTAGACCTTGAA  949
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGTTAATGAGGGCCTCCATGGAGGCTGTAGCATTTCAGCTAGACCTTGAA  950

seq1  GATCCTGATGGAAAAATGAAATGCATTAATTGGCCATTTATTTAACAGGT  999
      ||||||||||||||||||||||||||||| ||||||||||||||||| ||
seq2  GATCCTGATGGAAAAATGAAATGCATTAA-TGGCCATTTATTTAACA-GT  998

seq1  ATAGTGAGAA-TGTCATGCATTATACGAGGGCAGTG-TTTCTCAACCTGT  1047
      |||||||||| ||||||||||||||||||||||||| |||||||| ||||
seq2  ATAGTGAGAATTGTCATGCATTATACGAGGGCAGTGTTTTCTCAA-CTGT  1047

seq1  GGGTCGTGACCTCTCTGTTGGGGGGG  1073
      ||||||||| ||||||| ||||||||
seq2  GGGTCGTGA-CTCTCTGGTGGGGGGG  1072

seq1: chr3_105430819_105431915
seq2: B6Ng01-320G18.g_65_1161 (reverse)

seq1  CACAACCCCACCTTCAAAGGTTGTGGTCCAGGCTCTGCCTCACTCCTCCT  50
      |||||||||||||   || | |||||| |||||||||||||||||||| |
seq2  CACAACCCCACCT--CAATGATGTGGT-CAGGCTCTGCCTCACTCCTCAT  47

seq1  TTGACCTTTCTGCCTCATTTACCACATTGAGCGAATTAGCT--GTTTCT-  97
      |  |||||||||||||| |||||||| ||||||||||||||   ||||| 
seq2  TGAACCTTTCTGCCTCA-TTACCACAATGAGCGAATTAGCTTGTTTTCTC  96

seq1  CCCCAGTGTTAAACTGATGAGATGTCTCCTGCCTGTACTTTGGGTTCTAG  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGTGTTAAACTGATGAGATGTCTCCTGCCTGTACTTTGGGTTCTAG  146

seq1  TTACAAAGCTATCCGGGTGTAAATATTGTCAGGCATAACGATATAGCTTG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAAGCTATCCGGGTGTAAATATTGTCAGGCATAACGATATAGCTTG  196

seq1  ATAAAGATATTCATTCTCAGGGCTTCCGTCATATGGCCG-AACAGACACA  246
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATAAAGATATTCATTCTCAGGGCTTCCGTCATATGGCCGAAACAGACACA  246

seq1  TCCTGACGACTCAGGCAAGAAAGATAAACAAGTGTCTGTCTTGAATAGCA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGACGACTCAGGCAAGAAAGATAAACAAGTGTCTGTCTTGAATAGCA  296

seq1  AAGCTAAAGGCTGTGGAAATGTGTCTGTCCATCCAGAAATCTGGTCACTG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAAAGGCTGTGGAAATGTGTCTGTCCATCCAGAAATCTGGTCACTG  346

seq1  TCCTGGCTGTAGAGCTTGTCTCCACTCCTACCAGGAGGACATTGGAAGAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCTGTAGAGCTTGTCTCCACTCCTACCAGGAGGACATTGGAAGAA  396

seq1  ACACAAACCATAATATTAGCATCACTTCTCTGGCGGAAACTTCAGGCTCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAACCATAATATTAGCATCACTTCTCTGGCGGAAACTTCAGGCTCA  446

seq1  TAAGTAAAGCAGATCTTTATCCAGCAATTGGGGTTTCTGTGGTAATGAAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAAAGCAGATCTTTATCCAGCAATTGGGGTTTCTGTGGTAATGAAG  496

seq1  TCTCTGCTTTGAGCATTTGTTAAAACCTGATTCATCTGAGTGATAAGAAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCTTTGAGCATTTGTTAAAACCTGATTCATCTGAGTGATAAGAAA  546

seq1  ATGTGAGGATGACAGAGGCGCCTCAATTACTCGTCTCCCTGCTAATCCTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAGGATGACAGAGGCGCCTCAATTACTCGTCTCCCTGCTAATCCTT  596

seq1  GGTACAGTGTGTGTTTAGCAAGAGCCTGCTGTTCGCAGCTCTTCTGCTGC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACAGTGTGTGTTTAGCAAGAGCCTGCTGTTCGCAGCTCTTCTGCTGC  646

seq1  TGGGTCGTGTCCGCTCTGTTCTGCTCAGGTCTCGCTCATGTGCATCATAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCGTGTCCGCTCTGTTCTGCTCAGGTCTCGCTCATGTGCATCATAC  696

seq1  TGGATTCGCAGAGGATGCTTTTCTTTTTCTCTCTTCTTACCAGTGCATTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTCGCAGAGGATGCTTTTCTTTTTCTCTCTTCTTACCAGTGCATTG  746

seq1  GACTGTGCAGTAGTCTAAGCAGCTGGAGTCTGATAAGGGTACCCGCCCCC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTGCAGTAGTCTAAGCAGCTGGAGTCTGATAAGGGTACCCGCCCCC  796

seq1  AGTCGAAAATGTTTGCTTCAGATTCTTGCTAGGTTCTGGAAGTGACCTGG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGAAAATGTTTGCTTCAGATTCTTGCTAGGTTCTGGAAGTGACCTGG  846

seq1  GGCTCCTCCTCTAAGTCCACTGTGACCCATTCCCAAAAGCCCCACCCCAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCTCCTCTAAGTCCACTGTGACCCATTCCCAAAAGCCCCACCCCAC  896

seq1  TGTGCCCCTGTGAGTTCTTCACAAAATGACTGGATTCTCAGAAGCCTGCA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCCCTGTGAGTTCTTCACAAAATGACTGGATTCTCAGAAGCCTGCA  946

seq1  GTTTCTTCAGTAAATAGGGCATTGTGTTAATCAGGGTTTCTATTCCTACA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTCAGTAAATAGGGCATTGTGTTAATCAGGGTTTCTATTCCTACA  996

seq1  CAAAACCTCATGACCAAGAAGCAAGTTGGGAAGGAAGGGGTTTATTCAGT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCTCATGACCAAGAAGCAAGTTGGGAAGGAAGGGGTTTATTCAGT  1046

seq1  TTACACTTCCACACTGCTGTTCATCACTAAAGGAAGTCAGGACTGGAATT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACTTCCACACTGCTGTTCATCACTAAAGGAAGTCAGGACTGGAATT  1096

seq1  C  1097
      |
seq2  C  1097