BAC Information

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BAC

Clone NameB6Ng01-320H05
Chromosome3 (Build37)
Map Location 64,143,372 - 64,144,392
singlet/doubletsinglet
Overlap gene4930518C23Rik, EG667031
Upstream geneMme, Plch1, LOC100040836, E130311K13Rik, Slc33a1, Gmps, LOC670032, EG56544, LOC380739, EG637004
Downstream geneEG637053, LOC672951, EG639869, EG667060, EG667069, LOC100040918, 4933425M15Rik, LOC670110, Kcnab1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320H05.bB6Ng01-320H05.g
ACCGA109813GA109814
length1,2041,035
definitionB6Ng01-320H05.b B6Ng01-320H05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttgttcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaattgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggctttttttggttgggagactattaataactgcttctatttct
ttaggtgatatgggactgtttagatggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttcttgtttccacttggttgatttcacccctgagtttgattat
ttcctgccgtctactcctcttgggtgaatttgcttccttttttctagggc
ttttagatgtgttgtcaagctgctagtatgtgctgtctcccgtttcttct
tggaggcactcagcgctatgagtttccctcttagaaatgctttcatgtgt
cccatagtttgggtacgttgtgctcatttcattaaactctaaaaagtctt
aatttctttcttattctcttgaaccaaagtatcattgaagaaagagtgta
atcagtttcaaagtgaaatgtagcttttcaacaaattagtgtattgaaga
atcagtccttagccaatgggtggatcatgaatagagataatcacatggag
caat
gaattccttgcttatgaagaggcactggggttcacccttgtcatcctttc
catctttggggcacttgtggtcttggcagtcactgttgtgtacgtaatcc
acagacacactccattggtgaaagccaatgaccgggagctgagctttttc
attcagatgtctctggtcatcactgtgctgtcttctttgctgtttatagg
caagccatgcaactggtcctgcatggcccgccagatcactctggcactgg
gcttttgcctttgtctgtcttccattctaggaaagactatttcactcttt
tttgcctacaggatttccttatccaaaacccgccttatatctatgcatcc
catttttcgaaaattaattgtactgatctgtgttataggggagatttgtg
tatgtgcagtatacttggtgttggagcctccaagcctgttcaagaacatt
gaaattcaaaatgtaaagatcatctttgaatgcaatgaaggttctataga
gtttctgtgctccatttttgggtttgatgttcttttggctctgctgtgtt
ttgttaccacctttgtggctcgccagctgccagataactattatgaaggg
aaatgtatcacttttggaatgctggtctttttcattgtctggatctcttt
tgtccctgcttacttgagcaccaaaggcaaattcaaagtggctgtggaaa
tatttgccattttggcatccagctatggcttgttaggctgtctatttctt
cccaagtgcttcattatcttgctgaggccaaagaggaacactgatgaaac
tgttggtggaagagtccccactgttgacaggagcatccagctgacctcag
cttctgtgagcagtgagcttaacagcactacagtgtccactgttctggat
gagtagagcagttgagatccatgtgacatgcaaaggatgtcactttagat
gaatattcctggctcaacctttccttttatgtttaatctgaagttagctt
ctgttggtggtaagtgtaataatttgggttggttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_64143372_64144392
seq2: B6Ng01-320H05.g_65_1099 (reverse)

seq1  CAACCAA-------TATTACAC-TACCA-CAACAGAAGCT-ACTTCAGAT  40
      |||||||       |||||||| ||||| ||||||||||| |||||||||
seq2  CAACCAACCCAAATTATTACACTTACCACCAACAGAAGCTAACTTCAGAT  50

seq1  TAAACATAAAAGGGAAGGTTGAGCCAGG-ATA-TCATCTAAGGTGACATC  88
      ||||||||||||| |||||||||||||| ||| |||||||| ||||||||
seq2  TAAACATAAAAGGAAAGGTTGAGCCAGGAATATTCATCTAAAGTGACATC  100

seq1  C-TTGCATGTCACATGGATCTC-ACTGCTCTACTCATCCAGAACAGTGGA  136
      | |||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTTTGCATGTCACATGGATCTCAACTGCTCTACTCATCCAGAACAGTGGA  150

seq1  CACTGTAGTGCTGTTAAGCTCACTGCTCACAGAAGCTGAGGTCAGCTGGA  186
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTAGTGCTGTTAAGCTCACTGCTCACAGAAGCTGAGGTCAGCTGGA  200

seq1  TGCTCCTGTCAACAGTGGGGACTCTTCCACCAACAGTTTCATCAGTGTTC  236
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTGTCAACAGTGGGGACTCTTCCACCAACAGTTTCATCAGTGTTC  250

seq1  CTCTTTGGCCTCAGCAAGATAATGAAGCACTTGGGAAGAAATAGACAGCC  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGGCCTCAGCAAGATAATGAAGCACTTGGGAAGAAATAGACAGCC  300

seq1  TAACAAGCCATAGCTGGATGCCAAAATGGCAAATATTTCCACAGCCACTT  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAGCCATAGCTGGATGCCAAAATGGCAAATATTTCCACAGCCACTT  350

seq1  TGAATTTGCCTTTGGTGCTCAAGTAAGCAGGGACAAAAGAGATCCAGACA  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTGCCTTTGGTGCTCAAGTAAGCAGGGACAAAAGAGATCCAGACA  400

seq1  ATGAAAAAGACCAGCATTCCAAAAGTGATACATTTCCCTTCATAATAGTT  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAAGACCAGCATTCCAAAAGTGATACATTTCCCTTCATAATAGTT  450

seq1  ATCTGGCAGCTGGCGAGCCACAAAGGTGGTAACAAAACACAGCAGAGCCA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGCAGCTGGCGAGCCACAAAGGTGGTAACAAAACACAGCAGAGCCA  500

seq1  AAAGAACATCAAACCCAAAAATGGAGCACAGAAACTCTATAGAACCTTCA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACATCAAACCCAAAAATGGAGCACAGAAACTCTATAGAACCTTCA  550

seq1  TTGCATTCAAAGATGATCTTTACATTTTGAATTTCAATGTTCTTGAACAG  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTCAAAGATGATCTTTACATTTTGAATTTCAATGTTCTTGAACAG  600

seq1  GCTTGGAGGCTCCAACACCAAGTATACTGCACATACACAAATCTCCCCTA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGAGGCTCCAACACCAAGTATACTGCACATACACAAATCTCCCCTA  650

seq1  TAACACAGATCAGTACAATTAATTTTCGAAAAATGGGATGCATAGATATA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACAGATCAGTACAATTAATTTTCGAAAAATGGGATGCATAGATATA  700

seq1  AGGCGGGTTTTGGATAAGGAAATCCTGTAGGCAAAAAAGAGTGAAATAGT  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGGGTTTTGGATAAGGAAATCCTGTAGGCAAAAAAGAGTGAAATAGT  750

seq1  CTTTCCTAGAATGGAAGACAGACAAAGGCAAAAGCCCAGTGCCAGAGTGA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTAGAATGGAAGACAGACAAAGGCAAAAGCCCAGTGCCAGAGTGA  800

seq1  TCTGGCGGGCCATGCAGGACCAGTTGCATGGCTTGCCTATAAACAGCAAA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCGGGCCATGCAGGACCAGTTGCATGGCTTGCCTATAAACAGCAAA  850

seq1  GAAGACAGCACAGTGATGACCAGAGACATCTGAATGAAAAAGCTCAGCTC  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACAGCACAGTGATGACCAGAGACATCTGAATGAAAAAGCTCAGCTC  900

seq1  CCGGTCATTGGCTTTCACCAATGGAGTGTGTCTGTGGATTACGTACACAA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTCATTGGCTTTCACCAATGGAGTGTGTCTGTGGATTACGTACACAA  950

seq1  CAGTGACTGCCAAGACCACAAGTGCCCCAAAGATGGAAAGGATGACAAGG  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGACTGCCAAGACCACAAGTGCCCCAAAGATGGAAAGGATGACAAGG  1000

seq1  GTGAACCCCAGTGCCTCTTCATAAGCAAGGAATTC  1021
      |||||||||||||||||||||||||||||||||||
seq2  GTGAACCCCAGTGCCTCTTCATAAGCAAGGAATTC  1035