BAC Information

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BAC

Clone NameB6Ng01-320P06
Chromosome3 (Build37)
Map Location 157,832,038 - 158,004,579
singlet/doubletdoublet
Overlap geneLrrc7
Upstream geneNegr1, LOC546818, Zranb2, Ptger3, LOC433686, LOC624684, Cth, Ankrd13c, Sfrs11, Lrrc40
Downstream geneLOC100041008, LOC668905
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320P06.bB6Ng01-320P06.g
ACCGA110190GA110191
length1,1481,030
definitionB6Ng01-320P06.b B6Ng01-320P06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(158,003,427 - 158,004,579)(157,832,038 - 157,833,080)
sequence
gaattcaaaggggacgtgttaggtagcagcaagtgtcctgatgaaaataa
agcacagactttccgaaaggccagttcaggttgaaagggcagcctgtgca
tccctaagaagtgacattttgtgttctgttctgattgacaggggaaggtc
acaaggagagatctgagaataagtgtgctaggccatgagtccaaagactt
gcaagagagcttgtgatgagtgagagaaaaagtggagcagatagggcagg
aggctgacaagcactgggacaaaaatcaactgaaggattaaaaaaaaaag
caagaacatgagatcacttatttttcaagtgccaattttggtgtggtggg
tatcagtgaaaagtaaaagcaaatagattaaggttggtataatttagggg
aaagccgcaggcttcaactctaccaatgtaattttagaaactaataataa
aataaaataaaacccttcagactaggtttcataggtgaaggaaacaactt
agccagtggaactagaatatcagggcctgagaaagatctaaaaataatag
ccatttggagagctagaaaataagtatgaagtatcactgaggatgtggga
agaaaaaaaatgtgttgtcatggaagcagagaaaaaaatggaaagtgttt
aaaaataagaggcaatataaacagagactatggcagtaagaacaggaaag
aacattgtatttagtacatgggaataatagttatagtcacaaggttgaac
tgaagaaccaacaatactgactctcctgtgagatgtcactaggaagaaat
aaagcaagccagagaagcccgtgagagcagggcactgctatttcttgtta
agattggtgacatttggggatggagaaactcacaggttcagagcacttgc
tgcttctgcagaggtttcagtttgattctcagaacccacatgacagccca
caacctctgtaactccagatagttatgagacatcaaacacctcttctgac
cccaagggcacagatactccacctagtacacataggtacctcagacaaaa
caatacatacaatttaaataaaaacaaatacggttttgattgaaaatatt
ggcaacctccatgctacagtcgttgcacgaagctcattgatacataaa

gaattcactcagggttaggttttcataaccacagtgctacaaagggtgtt
gagtgtgattccatgaaatttaaatacaaagggtatgtgtgcgtgtgcgt
gtgtgtgtacacgtgcacgcgtgcacatgcgtgcgacttgctgaattctg
ctttctgtcctacttgtactattgtactatcttagatggaagactgtgac
tttgctttgatatgtgtggttatcatgtgaagaagagaccacagtggtac
ttgtaaggcaaggaaaaaaacctaaactgcagatttactttatcctcgga
aactccaggtttcatttccgtaaaagtgaaagtatgcttctcttttgtgt
ggatttgcgttctataactatgacttttttgttttgttcttacaataggg
cctcactctgtatccaaggctggccttgaaacttccagccatcctcctgt
ttcagcctcccaagtagctatgactgtttttgctcaaggtcttctccctg
tctggaatgtcctccactggttcctatgttaagggaattatgtcatcttt
aatacatggttcagtcctaatttagaacaggaaatcctggcatcacttca
tgtgtgtttctagcttagctttgaatcaatggggagcctgggacacagtt
tcttttattttagcctctcacagtgtttagcacagtgctacatatactgt
tggtgttcatatgccacaaattgattatccgaaatgcagatttgtaaaag
agttttgtgaatttagattttagagaagtaatatggaccagacatgctcg
ctccaattgtgtttctagcaaaagtaaaagatgcaactaattagctgaag
agttgatgagatagcagaggtggcataatgtagttgaattcttttcagac
acacaatcaataagactgaaattatagcttatttcccaaacataggaagc
aagcctttcatggtcagatctcacagcctgggtttacttgtcctgatcta
tatgttgtgggttcttttctcttttctctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_158003427_158004579
seq2: B6Ng01-320P06.b_50_1197 (reverse)

seq1  TTTATGTATACAAATGAGCTTCCGTGCCACTGACTGTAGCATGGAG--TT  48
      |||||||||   ||||||||| ||||| || |||||||||||||||  | 
seq2  TTTATGTAT--CAATGAGCTT-CGTGCAAC-GACTGTAGCATGGAGGTTG  46

seq1  CCCATATTTTCATTCAAAAAACGTATTTGTTTTTATTTAATGTGTATGTA  98
      || ||||||||| || |||| |||||||||||||||||||  ||||||||
seq2  CCAATATTTTCAATC-AAAACCGTATTTGTTTTTATTTAAATTGTATGTA  95

seq1  -TGTTTTGTCTGAGGTACCTATGTGTACTAGGT-GAGTATCTGGTGCCCT  146
       |||||||||||||||||||||||||||||||| |||||||| |||||| 
seq2  TTGTTTTGTCTGAGGTACCTATGTGTACTAGGTGGAGTATCT-GTGCCC-  143

seq1  TTGGGGTCAGAAGAAGGTGTTTGATGTCTCATAACTATCTGGAGTTACAG  196
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTGGGGTCAGAAG-AGGTGTTTGATGTCTCATAACTATCTGGAGTTACAG  192

seq1  AGGTTGTGGGCTGTCATGTGGGTTCTGAGAATCAAACCTGAAACCTCTGC  246
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGGTTGTGGGCTGTCATGTGGGTTCTGAGAATCAAA-CTGAAACCTCTGC  241

seq1  AGAAGCAGCAAGTGCTCTGAACCTGTGAGTTTCTCCATCCCCAAATGTCA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAGCAAGTGCTCTGAACCTGTGAGTTTCTCCATCCCCAAATGTCA  291

seq1  CCAATCTTAACAAGAAATAGCAGTGCCCTGCTCTCACGGGCTTCTCTGGC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCTTAACAAGAAATAGCAGTGCCCTGCTCTCACGGGCTTCTCTGGC  341

seq1  TTGCTTTATTTCTTCCTAGTGACATCTCACAGGAGAGTCAGTATTGTTGG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTATTTCTTCCTAGTGACATCTCACAGGAGAGTCAGTATTGTTGG  391

seq1  TTCTTCAGTTCAACCTTGTGACTATAACTATTATTCCCATGTACTAAATA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCAGTTCAACCTTGTGACTATAACTATTATTCCCATGTACTAAATA  441

seq1  CAATGTTCTTTCCTGTTCTTACTGCCATAGTCTCTGTTTATATTGCCTCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTTCTTTCCTGTTCTTACTGCCATAGTCTCTGTTTATATTGCCTCT  491

seq1  TATTTTTAAACACTTTCCATTTTTTTCTCTGCTTCCATGACAACACATTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTAAACACTTTCCATTTTTTTCTCTGCTTCCATGACAACACATTT  541

seq1  TTTTTCTTCCCACATCCTCAGTGATACTTCATACTTATTTTCTAGCTCTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTCCCACATCCTCAGTGATACTTCATACTTATTTTCTAGCTCTC  591

seq1  CAAATGGCTATTATTTTTAGATCTTTCTCAGGCCCTGATATTCTAGTTCC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGCTATTATTTTTAGATCTTTCTCAGGCCCTGATATTCTAGTTCC  641

seq1  ACTGGCTAAGTTGTTTCCTTCACCTATGAAACCTAGTCTGAAGGGTTTTA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCTAAGTTGTTTCCTTCACCTATGAAACCTAGTCTGAAGGGTTTTA  691

seq1  TTTTATTTTATTATTAGTTTCTAAAATTACATTGGTAGAGTTGAAGCCTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTATTATTAGTTTCTAAAATTACATTGGTAGAGTTGAAGCCTG  741

seq1  CGGCTTTCCCCTAAATTATACCAACCTTAATCTATTTGCTTTTACTTTTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTTTCCCCTAAATTATACCAACCTTAATCTATTTGCTTTTACTTTTC  791

seq1  ACTGATACCCACCACACCAAAATTGGCACTTGAAAAATAAGTGATCTCAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATACCCACCACACCAAAATTGGCACTTGAAAAATAAGTGATCTCAT  841

seq1  GTTCTTGCTTTTTTTTTTAATCCTTCAGTTGATTTTTGTCCCAGTGCTTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTGCTTTTTTTTTTAATCCTTCAGTTGATTTTTGTCCCAGTGCTTG  891

seq1  TCAGCCTCCTGCCCTATCTGCTCCACTTTTTCTCTCACTCATCACAAGCT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTCCTGCCCTATCTGCTCCACTTTTTCTCTCACTCATCACAAGCT  941

seq1  CTCTTGCAAGTCTTTGGACTCATGGCCTAGCACACTTATTCTCAGATCTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCAAGTCTTTGGACTCATGGCCTAGCACACTTATTCTCAGATCTC  991

seq1  TCCTTGTGACCTTCCCCTGTCAATCAGAACAGAACACAAAATGTCACTTC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGTGACCTTCCCCTGTCAATCAGAACAGAACACAAAATGTCACTTC  1041

seq1  TTAGGGATGCACAGGCTGCCCTTTCAACCTGAACTGGCCTTTCGGAAAGT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGATGCACAGGCTGCCCTTTCAACCTGAACTGGCCTTTCGGAAAGT  1091

seq1  CTGTGCTTTATTTTCATCAGGACACTTGCTGCTACCTAACACGTCCCCTT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTTTATTTTCATCAGGACACTTGCTGCTACCTAACACGTCCCCTT  1141

seq1  TGAATTC  1153
      |||||||
seq2  TGAATTC  1148


seq1: chr3_157832038_157833080
seq2: B6Ng01-320P06.g_66_1095

seq1  GAATTCACTCAGGGTTAGGTTTTCATAACCACAGTGCTACAAAGGGTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCAGGGTTAGGTTTTCATAACCACAGTGCTACAAAGGGTGTT  50

seq1  GAGTGTGATTCCATGAAATTTAAATACAAAGGGTATGTGTGCGTGTGCGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTGATTCCATGAAATTTAAATACAAAGGGTATGTGTGCGTGTGCGT  100

seq1  GTGTGTGTACACGTGCACGCGTGCACATGCGTGCGACTTGCTGAATTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTACACGTGCACGCGTGCACATGCGTGCGACTTGCTGAATTCTG  150

seq1  CTTTCTGTCCTACTTGTACTATTGTACTATCTTAGATGGAAGACTGTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGTCCTACTTGTACTATTGTACTATCTTAGATGGAAGACTGTGAC  200

seq1  TTTGCTTTGATATGTGTGGTTATCATGTGAAGAAGAGACCACAGTGGTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTTGATATGTGTGGTTATCATGTGAAGAAGAGACCACAGTGGTAC  250

seq1  TTGTAAGGCAAGGAAAAAAACCTAAACTGCAGATTTACTTTATCCTCGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAGGCAAGGAAAAAAACCTAAACTGCAGATTTACTTTATCCTCGGA  300

seq1  AACTCCAGGTTTCATTTCCGTAAAAGTGAAAGTATGCTTCTCTTTTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCAGGTTTCATTTCCGTAAAAGTGAAAGTATGCTTCTCTTTTGTGT  350

seq1  GGATTTGCGTTCTATAACTATGACTTTTTTGTTTTGTTCTTACAATAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTGCGTTCTATAACTATGACTTTTTTGTTTTGTTCTTACAATAGGG  400

seq1  CCTCACTCTGTATCCAAGGCTGGCCTTGAAACTTCCAGCCATCCTCCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACTCTGTATCCAAGGCTGGCCTTGAAACTTCCAGCCATCCTCCTGT  450

seq1  TTCAGCCTCCCAAGTAGCTATGACTGTTTTTGCTCAAGGTCTTCTCCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCCTCCCAAGTAGCTATGACTGTTTTTGCTCAAGGTCTTCTCCCTG  500

seq1  TCTGGAATGTCCTCCACTGGTTCCTATGTTAAGGGAATTATGTCATCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAATGTCCTCCACTGGTTCCTATGTTAAGGGAATTATGTCATCTTT  550

seq1  AATACATGGTTCAGTCCTAATTTAGAACAGGAAATCCTGGCATCACTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATGGTTCAGTCCTAATTTAGAACAGGAAATCCTGGCATCACTTCA  600

seq1  TGTGTGTTTCTAGCTTAGCTTTGAATCAATGGGGAGCCTGGGACACAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTTTCTAGCTTAGCTTTGAATCAATGGGGAGCCTGGGACACAGTT  650

seq1  TCTTTTATTTTAGCCTCTCACAGTGTTTAGCACAGTGCTACATATACTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTATTTTAGCCTCTCACAGTGTTTAGCACAGTGCTACATATACTGT  700

seq1  TGGTGTTCATATGCCACAAATTGATTATCCGAAATGCAGATTTGTAAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTTCATATGCCACAAATTGATTATCCGAAATGCAGATTTGTAAAAG  750

seq1  AGTTTTGTGAATTTAGATTTTAGAGAAGTAATATGGACCAGACATGCTCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGTGAATTTAGATTTTAGAGAAGTAATATGGACCAGACATGCTCG  800

seq1  CTCCAATTGTGTTTCTAGCAAAAGTAAAAGATGCAACTAATTAGCTGAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAATTGTGTTTCTAGCAAAAGTAAAAGATGCAACTAATTAGCTGAAG  850

seq1  AGTTGATGAGATAGCAGAGGTGGCATAATGTAGTTGAATTCTTTTCAGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGATGAGATAGCAGAGGTGGCATAATGTAGTTGAATTCTTTTCAGAC  900

seq1  AACACAAATCAATAAGACTGAAATTATAGCTTATTT-CCAAACATAGGAA  949
       |||| |||||||||||||||||||||||||||||| |||||||||||||
seq2  -ACAC-AATCAATAAGACTGAAATTATAGCTTATTTCCCAAACATAGGAA  948

seq1  GCAAGCCTTTCATGGTCAGATCTCACAAGCCTGGGTTTTACTTGTTCCTG  999
      |||||||||||||||||||||||||| |||||||| |||||||| |||||
seq2  GCAAGCCTTTCATGGTCAGATCTCAC-AGCCTGGG-TTTACTTG-TCCTG  995

seq1  ATCCTGGTTAATGTTTGTGGGTTTCTTTTTCCTCTTTTTCTCTT  1043
      |||    |  ||| ||||||| |||||||  ||| |||||||||
seq2  ATC----TATATG-TTGTGGG-TTCTTTT--CTC-TTTTCTCTT  1030


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