BAC Information

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BAC

Clone NameB6Ng01-321E15
Chromosome3 (Build37)
Map Location 32,319,806 - 32,469,151
singlet/doubletdoublet
Overlap genePik3ca, Kcnmb3, Zfp639, Mfn1
Upstream geneLOC625125, Kcnmb2, LOC665514, Zmat3, 4930429B21Rik
Downstream geneGnb4, LOC100040977, Actl6a, Mrpl47, Ndufb5, Usp13, Pex2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321E15.bB6Ng01-321E15.g
ACCGA110438GA110439
length1,2001,009
definitionB6Ng01-321E15.b B6Ng01-321E15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,319,806 - 32,321,005)(32,468,147 - 32,469,151)
sequence
gaattccctctgtaggccatgctgaccaaactcagagatctacttacctc
tgcctcccacattctaggattaaaggtgtgtgccaccacagccacctggc
agcaccttttagaatgggttaaggattacttgttgaatgggggactggtc
acttctctgataactttctggctgagtagtgatttaaaaaaaggactgta
gctcagtagcagagtactcactgagcatatgagaagccttgggctcaatc
tctagcaccacaaaaacaaaaagcaatggaagtgctgacagctatgccgg
agactgaccgtgtgctgtcatggggcaattcagagaagttagtcctttgg
gtttctgttggaaagtgagggtggggctacagtagctttgctttcattta
ccccccagtgcctttaaccattttagtttatggaggtgtctttaagagga
agtgtagcatatgagcctagacattctgctgctgtttatcttggtgctgt
gcattgaacccaggactgcccgaagcttagccagagctaccttctcgcgc
tgaaccctagatagaggaacatctagcatcatggaaataagtgtttagtg
ttagactggtttgcatatgtattgtccggactttgtaatatgtgctcagg
tagggagaagagccagaattttgtcctggaaagatgacatcctgacaaga
gaaaagaacagcactgaaaatagccaggctgaggtcatcttcctgccatc
acacaccaatacagaggacagtgacagcaacaacaggcagaggacagctc
tgatggttttggagtgtgtgacagagaatagaaacattctgctcattttc
ctcaggagaggaattttttggctaaattgatgggatttaaatactaagat
tcatattctgatcaatgaaagagtgtttctctcatttttttttaactctg
ggctaatgactcatgctcttctcagaactggtgcttttgtggaaactaaa
gcacagttgtaaatcagccctgtcatttgggctgttgtgataagcattgt
tgtgggtagactagtgaatggtgcttgtagattccaaattgtaataaata
aagtaatcaatgtaatttggagggataatccatgaaaatagaaacctatc
aaggtttcaatcatttgagctctgtatcaggtattctttttaaaattttg

gaattcaagatctgctggagctacacagtaattactcaacaacttgaaaa
aaaaaaaaagagagaggagaaactgggtgaacctatacctgtaagaaagt
tctcttgaaatctaaagcctgttacacacttaaagtttgggctatgataa
taaaaatcacattctattcatcataaaaccatcaggaaaaagcggactca
ggaggctgaggcataaagactgtcatgagttagaggccagcctggctaca
attagacccaccttaatgaaacaaaaccatcaggtatctgtgcacactga
gcccccataagttctaaaaatccagtcttcatgatgaaggactcacaagg
accctaaaagggtcagaacttaggtctgtggaagaactatctgttaaagc
ccttgtgccttctaaagggctccaatacaccaaattccaaatgttcaaac
ttaatctgccagggaacaagaggacagatgagaagcaggggctcgttctg
tgtggtggcttcatcccgtgctgtgtcagctgacgccccacttactgctg
tacttggtggctgcagtttgcactggtgaagctcacaatcatctgcagct
tctcggttgcatagtttacaaactgctgcttaaacgctctctctttcgca
cgggtcgtccacgtcagcctctcataaaggtacagagctccgtacatact
taaggtgacagagattagtttccagcccactgttttccaaatctgaaaga
taagagtcccggctcaccatgaggaggaaacatactgtgagggtacaacc
gtgaaaggcactgtgactcctggctcatcttctagaaatgtattgtacct
tcctaacaaagcaatcttggtgggaaaaattgtaaacatcaggatgggct
ttcaccagcttgccacatggacaggctgaagcaagctcccctctgctctc
tataagattcttatttttatgtttccacgtgtctaagcgtttctgctgca
tcgtgcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_32319806_32321005
seq2: B6Ng01-321E15.b_49_1248

seq1  GAATTCCCTCTGTAGGCCATGCTGACCAAACTCAGAGATCTACTTACCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCTGTAGGCCATGCTGACCAAACTCAGAGATCTACTTACCTC  50

seq1  TGCCTCCCACATTCTAGGATTAAAGGTGTGTGCCACCACAGCCACCTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCCACATTCTAGGATTAAAGGTGTGTGCCACCACAGCCACCTGGC  100

seq1  AGCACCTTTTAGAATGGGTTAAGGATTACTTGTTGAATGGGGGACTGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCTTTTAGAATGGGTTAAGGATTACTTGTTGAATGGGGGACTGGTC  150

seq1  ACTTCTCTGATAACTTTCTGGCTGAGTAGTGATTTAAAAAAAGGACTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTCTGATAACTTTCTGGCTGAGTAGTGATTTAAAAAAAGGACTGTA  200

seq1  GCTCAGTAGCAGAGTACTCACTGAGCATATGAGAAGCCTTGGGCTCAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTAGCAGAGTACTCACTGAGCATATGAGAAGCCTTGGGCTCAATC  250

seq1  TCTAGCACCACAAAAACAAAAAGCAATGGAAGTGCTGACAGCTATGCCGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCACCACAAAAACAAAAAGCAATGGAAGTGCTGACAGCTATGCCGG  300

seq1  AGACTGACCGTGTGCTGTCATGGGGCAATTCAGAGAAGTTAGTCCTTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGACCGTGTGCTGTCATGGGGCAATTCAGAGAAGTTAGTCCTTTGG  350

seq1  GTTTCTGTTGGAAAGTGAGGGTGGGGCTACAGTAGCTTTGCTTTCATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGTTGGAAAGTGAGGGTGGGGCTACAGTAGCTTTGCTTTCATTTA  400

seq1  CCCCCCAGTGCCTTTAACCATTTTAGTTTATGGAGGTGTCTTTAAGAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCAGTGCCTTTAACCATTTTAGTTTATGGAGGTGTCTTTAAGAGGA  450

seq1  AGTGTAGCATATGAGCCTAGACATTCTGCTGCTGTTTATCTTGGTGCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAGCATATGAGCCTAGACATTCTGCTGCTGTTTATCTTGGTGCTGT  500

seq1  GCATTGAACCCAGGACTGCCCGAAGCTTAGCCAGAGCTACCTTCTCGCGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGAACCCAGGACTGCCCGAAGCTTAGCCAGAGCTACCTTCTCGCGC  550

seq1  TGAACCCTAGATAGAGGAACATCTAGCATCATGGAAATAAGTGTTTAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCCTAGATAGAGGAACATCTAGCATCATGGAAATAAGTGTTTAGTG  600

seq1  TTAGACTGGTTTGCATATGTATTGTCCGGACTTTGTAATATGTGCTCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACTGGTTTGCATATGTATTGTCCGGACTTTGTAATATGTGCTCAGG  650

seq1  TAGGGAGAAGAGCCAGAATTTTGTCCTGGAAAGATGACATCCTGACAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAGAAGAGCCAGAATTTTGTCCTGGAAAGATGACATCCTGACAAGA  700

seq1  GAAAAGAACAGCACTGAAAATAGCCAGGCTGAGGTCATCTTCCTGCCATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAACAGCACTGAAAATAGCCAGGCTGAGGTCATCTTCCTGCCATC  750

seq1  ACACACCAATACAGAGGACAGTGACAGCAACAACAGGCAGAGGACAGCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCAATACAGAGGACAGTGACAGCAACAACAGGCAGAGGACAGCTC  800

seq1  TGATGGTTTTGGAGTGTGTGACAGAGAATAGAAACATTCTGCTCATTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGTTTTGGAGTGTGTGACAGAGAATAGAAACATTCTGCTCATTTTC  850

seq1  CTCAGGAGAGGAATTTTTTGGCTAAATTGATGGGATTTAAATACTAAGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGAGAGGAATTTTTTGGCTAAATTGATGGGATTTAAATACTAAGAT  900

seq1  TCATATTCTGATCAATGAAAAGAGTGTTTCTCTCA-TTTTTTTTAACTCT  949
      ||||||||||||||||| ||||||||||||||||| ||||||||||||||
seq2  TCATATTCTGATCAATG-AAAGAGTGTTTCTCTCATTTTTTTTTAACTCT  949

seq1  GGGCTAATGACTCATGCTCTTCTCAGAACT-GTGCTTTTGTGGAAACTAA  998
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GGGCTAATGACTCATGCTCTTCTCAGAACTGGTGCTTTTGTGGAAACTAA  999

seq1  AGCACAGTTGTAAATCAGCCCTGTCATTTGGGCTGTTGTGAT-AGCATTG  1047
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGCACAGTTGTAAATCAGCCCTGTCATTTGGGCTGTTGTGATAAGCATTG  1049

seq1  TTGTGGGTAGACTAGTGATGGGTGC-TGTAGAT--CCAATTGTAATAAAA  1094
      ||||||||||||||||||  ||||| |||||||  | ||||||||| |||
seq2  TTGTGGGTAGACTAGTGAATGGTGCTTGTAGATTCCAAATTGTAAT-AAA  1098

seq1  TAAAGTAATTATTGTAATTTGGAGGATTATACAATGAAAATAGAAA-CTA  1143
      ||||||||| | |||||||||||||  ||  | ||||||||||||| |||
seq2  TAAAGTAATCAATGTAATTTGGAGGGATAATCCATGAAAATAGAAACCTA  1148

seq1  TCAAGTTTTTTCATCATTTTAGAGCTCTGTATCAAAGGTATTCTTTTTAA  1193
      |||||  |||  |||||||  ||||||||||||  |||||||||||||||
seq2  TCAAG-GTTTCAATCATTT--GAGCTCTGTATC--AGGTATTCTTTTTAA  1193

seq1  ATTTTTG  1200
      | |||||
seq2  AATTTTG  1200

seq1: chr3_32468147_32469151
seq2: B6Ng01-321E15.g_68_1076 (reverse)

seq1  CATGCACGGATGCAGGCAG-AACGCTTAGACACGT-GAAACATAAAAATA  48
      ||||||| |||||| |||| ||||||||||||||| ||||||||||||||
seq2  CATGCAC-GATGCA-GCAGAAACGCTTAGACACGTGGAAACATAAAAATA  48

seq1  AGATCTTTATAGAGAGCAAGAGGGAGCTTGCTTCAGCCTGTCCATGTGGC  98
      |||   ||||||||||||   |||||||||||||||||||||||||||||
seq2  AGAATCTTATAGAGAGCAGAGGGGAGCTTGCTTCAGCCTGTCCATGTGGC  98

seq1  AAGCT-GTGAAAGCCCATCCTGATGTTTACAATTTTTCCCA-CAAGATTG  146
      ||||| ||||||||||||||||||||||||||||||||||| ||||||||
seq2  AAGCTGGTGAAAGCCCATCCTGATGTTTACAATTTTTCCCACCAAGATTG  148

seq1  CTTTGTTAGGAAGGTAC-ATACATTTCTAGAAGATGAGCCAGGAGTCACA  195
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTTTGTTAGGAAGGTACAATACATTTCTAGAAGATGAGCCAGGAGTCACA  198

seq1  GTGCC-TTCACGGTTGTACCCTCACAGTATGTTTCCTCCTCATGGTGAGC  244
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTTTCACGGTTGTACCCTCACAGTATGTTTCCTCCTCATGGTGAGC  248

seq1  CGGGACTCTTATCTTTCAGATTTGGAAAACAGTGGGCTGGAAACTAATCT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGACTCTTATCTTTCAGATTTGGAAAACAGTGGGCTGGAAACTAATCT  298

seq1  CTGTCACCTTAAGTATGTACGGAGCTCTGTACCTTTATGAGAGGCTGACG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACCTTAAGTATGTACGGAGCTCTGTACCTTTATGAGAGGCTGACG  348

seq1  TGGACGACCCGTGCGAAAGAGAGAGCGTTTAAGCAGCAGTTTGTAAACTA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACGACCCGTGCGAAAGAGAGAGCGTTTAAGCAGCAGTTTGTAAACTA  398

seq1  TGCAACCGAGAAGCTGCAGATGATTGTGAGCTTCACCAGTGCAAACTGCA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACCGAGAAGCTGCAGATGATTGTGAGCTTCACCAGTGCAAACTGCA  448

seq1  GCCACCAAGTACAGCAGTAAGTGGGGCGTCAGCTGACACAGCACGGGATG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCAAGTACAGCAGTAAGTGGGGCGTCAGCTGACACAGCACGGGATG  498

seq1  AAGCCACCACACAGAACGAGCCCCTGCTTCTCATCTGTCCTCTTGTTCCC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCACCACACAGAACGAGCCCCTGCTTCTCATCTGTCCTCTTGTTCCC  548

seq1  TGGCAGATTAAGTTTGAACATTTGGAATTTGGTGTATTGGAGCCCTTTAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGATTAAGTTTGAACATTTGGAATTTGGTGTATTGGAGCCCTTTAG  598

seq1  AAGGCACAAGGGCTTTAACAGATAGTTCTTCCACAGACCTAAGTTCTGAC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCACAAGGGCTTTAACAGATAGTTCTTCCACAGACCTAAGTTCTGAC  648

seq1  CCTTTTAGGGTCCTTGTGAGTCCTTCATCATGAAGACTGGATTTTTAGAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTAGGGTCCTTGTGAGTCCTTCATCATGAAGACTGGATTTTTAGAA  698

seq1  CTTATGGGGGCTCAGTGTGCACAGATACCTGATGGTTTTGTTTCATTAAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGGGGGCTCAGTGTGCACAGATACCTGATGGTTTTGTTTCATTAAG  748

seq1  GTGGGTCTAATTGTAGCCAGGCTGGCCTCTAACTCATGACAGTCTTTATG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTCTAATTGTAGCCAGGCTGGCCTCTAACTCATGACAGTCTTTATG  798

seq1  CCTCAGCCTCCTGAGTCCGCTTTTTCCTGATGGTTTTATGATGAATAGAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGCCTCCTGAGTCCGCTTTTTCCTGATGGTTTTATGATGAATAGAA  848

seq1  TGTGATTTTTATTATCATAGCCCAAACTTTAAGTGTGTAACAGGCTTTAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTTTTATTATCATAGCCCAAACTTTAAGTGTGTAACAGGCTTTAG  898

seq1  ATTTCAAGAGAACTTTCTTACAGGTATAGGTTCACCCAGTTTCTCCTCTC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAGAGAACTTTCTTACAGGTATAGGTTCACCCAGTTTCTCCTCTC  948

seq1  TCTTTTTTTTTTTTTCAAGTTGTTGAGTAATTACTGTGTAGCTCCAGCAG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTTTTTTTTCAAGTTGTTGAGTAATTACTGTGTAGCTCCAGCAG  998

seq1  ATCTTGAATTC  1005
      |||||||||||
seq2  ATCTTGAATTC  1009