BAC Information

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BAC

Clone NameB6Ng01-321I10
Chromosome3 (Build37)
Map Location 112,710,466 - 112,711,581
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC625585, EG229746, LOC668717
Downstream geneUtp14B-ps, EG433643, OTTMUSG00000022462, LOC668723, Amy2-2, Amy2-1, LOC100043684, LOC100043686, LOC100043688, LOC100043207, Amy1, Rnpc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321I10.bB6Ng01-321I10.g
ACCGA110606GA110607
length1,0241,115
definitionB6Ng01-321I10.b B6Ng01-321I10.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctcttggaagactgtacctttgatgaatatgaagtgcccctcct
tttcttttttgatgactttgggttggaagttgattttattcgatattaga
atagctactccagcttgtttcttcagaccatttccttggaaaattttttt
ccaccctttcattctgaggtagtgtctgtccctgagatggatttcctgta
agcagcaaaatgttgggtcctgtttgtgtagtcagtctgtcagtctatgt
cttttttttgggtagttgagtccattgatactaagagatattaaggaaaa
ataattgttgcttcctattatttttgttgttaacgttggaattctgttct
tatggctgtattcttttaggttagttgaaggattactttcttgttttttc
taggacatggtttcagtccttgtattttttttctttctgttgttatcctt
tgaagggctgtattggtgaaagtataatgtgtgaatttggttcagtagtg
gaatacattggtttctccatctacagtcattgaaagtttggctaggtaaa
gtagcctgggctggcatttgtgttctcttagtgtctgtataacatctgtc
caggatcttctggctttcatagtctctggtgaaacatctggtgtaattct
gataggcttgcctttatatgttacttgacctttttgcctcactgctttta
atattcgatctttatttagtgcatttgttgttctgattattatgtatccg
gaggcatttcctttctggtccagtctatttggagatctgtaggcttcttg
tatgttcatggggcatctcttttcttttaggttttggggaagttttcttc
tataattttgttgaagatatttgctgggtcctttgagttgaaaaatcttc
attctcatctactcctattatccatagggtttggtcttctcattgtgtcc
tgaatttcctggatgtttgagttaggattctttttaaattttgtattttt
ctttgatggttatgctggatgttc
gaattcagtgttatttttaaccagaacatcactaaaaagtgaactgacac
cgggcagtggtggtgcatgcctttaatcccagcacttgggaggcagagac
aggcagatttctgagttcgagggcagcctggtctacagagtgagttccag
gacagccagggctatacagaaaaaccctgtctaaaaaaaaaaacaaaaac
aaaaacaaaacaaacaaagtgaactgacatgttatgctgagaaaaatgtt
gacaaggtttatcactttcattaaactacttctattgcaatactaaatgg
tttttaatataaactttattctgtgttttataacaaaattttaaatcccc
tattctctttttaatcttatgtaaggaattagactttattagactaattt
cattcctttgaaatgatctatatctataatgctgttatatttaaacaaat
acaatgaagtaattagaacaattttatttaaaataatattacgtagaatg
attaatcatgttttttcttagataaagtatctgtttcccatgtttactgt
gtgatttccaattgaataagcagggactgtatcttctttctacaactttg
attttctcctatgtaacttctatatattttttatttttttaaattaggta
tttatttcatttacatttccaatgctttcacaaaagtctcgcgcacactc
ccccacccactcccccaccaactcccccacccacccactcccacttcttg
gccctggcgttcccctgtactggggcatataaagtttgcatgaccaatgg
tcctctctttccactgatggctgactaggccatcttctgatacatacgca
gctagagacacaagctccaggggtactggttagttcatattgttgttcca
cctataggggtgcagatccccccagctccttggggtactttccctagctt
ctcatggggggccctatgatccatccaatagctgactgggagcatccatt
tatgtgtttgctaggcccggaattgtctcacaagaaacaggctctatcgg
gattgtcaagcaaattcttgctaggtgtatgcattgatgcagcgtttgga
agctgatcatgggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_112710466_112711581
seq2: B6Ng01-321I10.g_68_1182

seq1  GAATTCAGTGTTATTTTTAACCAGAACATCACTAAAAAGTGAACTGACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGTTATTTTTAACCAGAACATCACTAAAAAGTGAACTGACAC  50

seq1  CGGGCAGTGGTGGTGCATGCCTTTAATCCCAGCACTTGGGAGGCAGAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCAGTGGTGGTGCATGCCTTTAATCCCAGCACTTGGGAGGCAGAGAC  100

seq1  AGGCAGATTTCTGAGTTCGAGGGCAGCCTGGTCTACAGAGTGAGTTCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGATTTCTGAGTTCGAGGGCAGCCTGGTCTACAGAGTGAGTTCCAG  150

seq1  GACAGCCAGGGCTATACAGAAAAACCCTGTCTAAAAAAAAAAACAAAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCCAGGGCTATACAGAAAAACCCTGTCTAAAAAAAAAAACAAAAAC  200

seq1  AAAAACAAAACAAACAAAGTGAACTGACATGTTATGCTGAGAAAAATGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAAACAAACAAAGTGAACTGACATGTTATGCTGAGAAAAATGTT  250

seq1  GACAAGGTTTATCACTTTCATTAAACTACTTCTATTGCAATACTAAATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGGTTTATCACTTTCATTAAACTACTTCTATTGCAATACTAAATGG  300

seq1  TTTTTAATATAAACTTTATTCTGTGTTTTATAACAAAATTTTAAATCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATATAAACTTTATTCTGTGTTTTATAACAAAATTTTAAATCCCC  350

seq1  TATTCTCTTTTTAATCTTATGTAAGGAATTAGACTTTATTAGACTAATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTCTTTTTAATCTTATGTAAGGAATTAGACTTTATTAGACTAATTT  400

seq1  CATTCCTTTGAAATGATCTATATCTATAATGCTGTTATATTTAAACAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTTTGAAATGATCTATATCTATAATGCTGTTATATTTAAACAAAT  450

seq1  ACAATGAAGTAATTAGAACAATTTTATTTAAAATAATATTACGTAGAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGAAGTAATTAGAACAATTTTATTTAAAATAATATTACGTAGAATG  500

seq1  ATTAATCATGTTTTTTCTTAGATAAAGTATCTGTTTCCCATGTTTACTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATCATGTTTTTTCTTAGATAAAGTATCTGTTTCCCATGTTTACTGT  550

seq1  GTGATTTCCAATTGAATAAGCAGGGACTGTATCTTCTTTCTACAACTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTTCCAATTGAATAAGCAGGGACTGTATCTTCTTTCTACAACTTTG  600

seq1  ATTTTCTCCTATGTAACTTCTATATATTTTTTATTTTTTTAAATTAGGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTCCTATGTAACTTCTATATATTTTTTATTTTTTTAAATTAGGTA  650

seq1  TTTATTTCATTTACATTTCCAATGCTTTCACAAAAGTCTCGCGCACACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTCATTTACATTTCCAATGCTTTCACAAAAGTCTCGCGCACACTC  700

seq1  CCCCACCCACTCCCCCACCAACTCCCCCACCCACCCACTCCCACTTCTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCCACTCCCCCACCAACTCCCCCACCCACCCACTCCCACTTCTTG  750

seq1  GCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCATGACCAATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCATGACCAATGG  800

seq1  TCCTCTCTTTCCACTGATGGCTGACTAGGCCATCTTCTGATACATACGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCTTTCCACTGATGGCTGACTAGGCCATCTTCTGATACATACGCA  850

seq1  GCTAGAGACACAAGCTCCAGGGGTACTGGTTAGTTCATATTGTTGTTCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAGACACAAGCTCCAGGGGTACTGGTTAGTTCATATTGTTGTTCCA  900

seq1  CCTATAGGGTTGCAGATCCCCCCAGCTCCTT-GGGTACTTTCTCTAGCTC  949
      ||||||||| ||||||||||||||||||||| |||||||||| |||||| 
seq2  CCTATAGGGGTGCAGATCCCCCCAGCTCCTTGGGGTACTTTCCCTAGCTT  950

seq1  CTCCATTGGGGGCCCTATGATCCATCCAATAGCTGACTGTGAGCATCCAT  999
      || ||| |||||||||||||||||||||||||||||||| ||||||||||
seq2  CT-CATGGGGGGCCCTATGATCCATCCAATAGCTGACTGGGAGCATCCAT  999

seq1  TTATGTGTTTGCTAGGCCCCGGCATTGTCTCACAAGAGACA-GCTCTATC  1048
      |||||||||||||||| ||||| |||||||||||||| ||| ||||||||
seq2  TTATGTGTTTGCTAGG-CCCGGAATTGTCTCACAAGAAACAGGCTCTATC  1048

seq1  TGGGTCCTTTC-AGCAAAATCTTGCTA-GTGTATGCAATGATGTCAGCGT  1096
       || |  | || |||||| |||||||| ||||||||| ||||| ||||||
seq2  GGGAT--TGTCAAGCAAATTCTTGCTAGGTGTATGCATTGATG-CAGCGT  1095

seq1  TTGGAAGCTGATCATGGGAT  1116
      ||||||||||||||||||||
seq2  TTGGAAGCTGATCATGGGAT  1115